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Protein
Submitted name:

cDNA FLJ10392 fis, clone NT2RM4000169, weakly similar to INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO1

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
cDNA FLJ10392 fis, clone NT2RM4000169, weakly similar to INTRACELLULAR PROTEIN TRANSPORT PROTEIN USO1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

PTM / Processingi

Proteomic databases

PaxDbiQ9NW05.
PRIDEiQ9NW05.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000338728.

Structurei

3D structure databases

ProteinModelPortaliQ9NW05.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili4 – 4542Sequence analysisAdd
BLAST
Coiled coili67 – 11145Sequence analysisAdd
BLAST
Coiled coili147 – 21670Sequence analysisAdd
BLAST
Coiled coili235 – 26228Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG4643. Eukaryota.
ENOG410YFRJ. LUCA.
HOVERGENiHBG055938.

Family and domain databases

InterProiIPR027717. Girdin.
IPR008636. Hook-related_fam.
[Graphical view]
PANTHERiPTHR18947. PTHR18947. 3 hits.
PTHR18947:SF30. PTHR18947:SF30. 3 hits.

Sequencei

Sequence statusi: Complete.

Q9NW05-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNQNAQLLIQ QSSLENENES VIKEREDLKS LYDSLIKDHE KLELLHERQA
60 70 80 90 100
SEYESLISKH GTLKSAHKNL EVEHRDLEDR YNQLLKQKGQ LEDLEKMLKV
110 120 130 140 150
EQEKMLLENK NHETVAAEYK KLCGENDRLN HTYSQLLKET EVLQTDHKNL
160 170 180 190 200
KSLLNNSKLE QTRLEAEFSK LKEQYQQLDI TSTKLNNQCE LLSQLKGNLE
210 220 230 240 250
EENRHLLDQI QTLMLQNRTL LEQNMESKDL FHVEQRQYID KLNELRRQKE
260 270 280 290 300
KLEEKIMDQY KFYDPSPPRR RGNWITLKMR KLIKSKKDIN RERQKSLTLT
310 320 330 340 350
PTRSDSSEGF LQLPHQDSQD SSSVGSNSLE DGQTLGTKKS STMNDLVQSM
360 370 380 390 400
VLAGQWTGST ENLEVPDVIS TGKRRKELGA MAFSTTAINF STVNSSAGFR
410 420 430 440 450
SKQLVNNKDT TSFEDISPQG VSDDSSTGSR VHASRPASLD SGRTSTSNSN
460 470 480 490 500
NNASLHEVKA GAVNNQSRPQ SHSSGEFSLL HDHEAWSSSG SSPIQYLKRQ
510 520 530 540 550
TRSSPVLQHK ISETLESRHH KIKTGSPGSE VVTLQQFLEE SNKLTSVQIK
560 570 580 590 600
SSSQENLLDE VMKSLSVSSD FLGKDKPVSC GLARSVSGKT PGDFYDRRTT
610 620 630
KPEFLRPGPR KTEDTYFISS AGKPTPGTQG KIKSED
Length:636
Mass (Da):72,108
Last modified:October 1, 2000 - v1
Checksum:iC001F7D22B34DCE2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK001254 mRNA. Translation: BAA91584.1.
UniGeneiHs.292925.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK001254 mRNA. Translation: BAA91584.1.
UniGeneiHs.292925.

3D structure databases

ProteinModelPortaliQ9NW05.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000338728.

Proteomic databases

PaxDbiQ9NW05.
PRIDEiQ9NW05.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiKOG4643. Eukaryota.
ENOG410YFRJ. LUCA.
HOVERGENiHBG055938.

Family and domain databases

InterProiIPR027717. Girdin.
IPR008636. Hook-related_fam.
[Graphical view]
PANTHERiPTHR18947. PTHR18947. 3 hits.
PTHR18947:SF30. PTHR18947:SF30. 3 hits.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ9NW05_HUMAN
AccessioniPrimary (citable) accession number: Q9NW05
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: March 16, 2016
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.