Q9NVH2 (INT7_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 93.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Integrator complex subunit 7 Short name=Int7 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 962 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Component of the Integrator complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing. The Integrator complex is associated with the C-terminal domain (CTD) of RNA polymerase II largest subunit (POLR2A) and is recruited to the U1 and U2 snRNAs genes. Plays a role in DNA damage response (DDR) signaling during the S phase. Ref.11 |
| Subunit structure | Belongs to the multiprotein complex Integrator, at least composed of INTS1, INTS2, INTS3, INTS4, INTS5, INTS6, INTS7, INTS8, INTS9/RC74, INTS10, CPSF3L/INTS11 and INTS12. Interacts with NABP2. Ref.7 Ref.11 |
| Subcellular location | Nucleus. Chromosome. Note: Localizes to sites of DNA damage in a H2AX-independent manner. Ref.11 |
| Sequence similarities | Belongs to the Integrator subunit 7 family. |
| Sequence caution | The sequence BAA91650.1 differs from that shown. Reason: Erroneous termination at position 618. Translated as Cys. The sequence BAB14116.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. |
Ontologies
| Keywords | |
|---|---|
| Biological process | DNA damage |
| Cellular component | Chromosome Nucleus |
| Coding sequence diversity | Alternative splicing Polymorphism |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | DNA damage checkpoint Inferred from mutant phenotype Ref.11. Source: UniProtKB cellular response to ionizing radiationInferred from direct assay Ref.11. Source: UniProtKB snRNA processingInferred from direct assay Ref.7. Source: HGNC |
| Cellular_component | chromosome Inferred from direct assay Ref.11. Source: UniProtKB integrator complexInferred from direct assay Ref.7. Source: HGNC |
| Complete GO annotation... | |
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9NVH2-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9NVH2-2) The sequence of this isoform differs from the canonical sequence as follows: 759-772: Missing. | ||||||
| Isoform 3 (identifier: Q9NVH2-3) The sequence of this isoform differs from the canonical sequence as follows: 773-792: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 4 (identifier: Q9NVH2-4) The sequence of this isoform differs from the canonical sequence as follows: 76-124: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 962 | 962 | Integrator complex subunit 7 | PRO_0000259549 | |||||
Regions | |||||||||
| Compositional bias | 937 – 955 | 19 | Gln-rich | ||||||
Amino acid modifications | |||||||||
| Modified residue | 525 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 527 | 1 | Phosphotyrosine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 76 – 124 | 49 | Missing in isoform 4. | VSP_043201 | |||||
| Alternative sequence | 759 – 772 | 14 | Missing in isoform 2. | VSP_021463 | |||||
| Alternative sequence | 773 – 792 | 20 | Missing in isoform 3. | VSP_021464 | |||||
| Natural variant | 425 | 1 | H → R. Ref.2 Ref.5 Corresponds to variant rs17851788 [ dbSNP | Ensembl ]. | VAR_028963 | |||||
Experimental info | |||||||||
| Sequence conflict | 805 | 1 | K → T in BAB14116. Ref.1 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1; 3 AND 4). Tissue: Brain. |
| [2] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2), VARIANT ARG-425. Tissue: Testis. |
| [3] | "The DNA sequence and biological annotation of human chromosome 1." Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. Bentley D.R.Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2), VARIANT ARG-425. Tissue: Skin and Uterus. |
| [6] | "Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs." Wiemann S., Weil B., Wellenreuther R., Gassenhuber J., Glassl S., Ansorge W., Boecher M., Bloecker H., Bauersachs S., Blum H., Lauber J., Duesterhoeft A., Beyer A., Koehrer K., Strack N., Mewes H.-W., Ottenwaelder B., Obermaier B. Poustka A.Genome Res. 11:422-435(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 204-962 (ISOFORM 1). Tissue: Testis. |
| [7] | "Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II." Baillat D., Hakimi M.-A., Naeaer A.M., Shilatifard A., Cooch N., Shiekhattar R. Cell 123:265-276(2005) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY, IDENTIFICATION IN THE INTEGRATOR COMPLEX. |
| [8] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [9] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [10] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [11] | "A DNA damage response screen identifies RHINO, a 9-1-1 and TopBP1 interacting protein required for ATR signaling." Cotta-Ramusino C., McDonald E.R. III, Hurov K., Sowa M.E., Harper J.W., Elledge S.J. Science 332:1313-1317(2011) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH NABP2, SUBCELLULAR LOCATION. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AK001363 mRNA. Translation: BAA91650.1. Sequence problems. AK001598 mRNA. Translation: BAA91779.1. AK022509 mRNA. Translation: BAB14067.1. AK022589 mRNA. Translation: BAB14116.1. Different initiation. AK297225 mRNA. Translation: BAG59708.1. AL117576 mRNA. Translation: CAB56000.1. AM392654 mRNA. Translation: CAL37532.1. AC092814 Genomic DNA. No translation available. CH471100 Genomic DNA. Translation: EAW93406.1. BC020523 mRNA. Translation: AAH20523.1. BC030716 mRNA. Translation: AAH30716.1. BC033918 mRNA. Translation: AAH33918.1. AL133049 mRNA. Translation: CAB61376.1. BK005725 mRNA. Translation: DAA05725.1. |
| IPI | IPI00645022. IPI00645488. IPI00743871. IPI00909591. |
| PIR | T17310. T42652. |
| RefSeq | NP_001186738.1. NM_001199809.1. NP_001186740.1. NM_001199811.1. NP_001186741.1. NM_001199812.1. NP_056249.1. NM_015434.3. |
| UniGene | Hs.369285. |
3D structure databases | |
| ProteinModelPortal | Q9NVH2. |
| SMR | Q9NVH2. Positions 103-136, 251-286. |
| ModBase | Search... |
PTM databases | |
| PhosphoSite | Q9NVH2. |
Polymorphism databases | |
| DMDM | 74752993. |
Proteomic databases | |
| PaxDb | Q9NVH2. |
| PRIDE | Q9NVH2. |
Protocols and materials databases | |
| DNASU | 25896. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000366992; ENSP00000355959; ENSG00000143493. ENST00000366993; ENSP00000355960; ENSG00000143493. ENST00000366994; ENSP00000355961; ENSG00000143493. ENST00000440600; ENSP00000388908; ENSG00000143493. |
| GeneID | 25896. |
| KEGG | hsa:25896. |
| UCSC | uc001hiw.2. human. uc001hiy.2. human. uc009xdb.2. human. |
Organism-specific databases | |
| CTD | 25896. |
| GeneCards | GC01M212113. |
| HGNC | HGNC:24484. INTS7. |
| MIM | 611350. gene. |
| neXtProt | NX_Q9NVH2. |
| PharmGKB | PA142672522. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG286030. |
| HOGENOM | HOG000063719. |
| HOVERGEN | HBG079489. |
| InParanoid | Q9NVH2. |
| KO | K13144. |
| OMA | HMHHDAS. |
| OrthoDB | EOG46DM23. |
| PhylomeDB | Q9NVH2. |
Gene expression databases | |
| Bgee | Q9NVH2. |
| CleanEx | HS_INTS7. |
| Genevestigator | Q9NVH2. |
| GermOnline | ENSG00000143493. Homo sapiens. |
Family and domain databases | |
| Gene3D | 1.25.10.10. 2 hits. |
| InterPro | IPR011989. ARM-like. IPR016024. ARM-type_fold. [Graphical view] |
| SUPFAM | SSF48371. ARM-type_fold. 1 hit. |
| ProtoNet | Search... |
Other | |
| ChiTaRS | INTS7. human. |
| GenomeRNAi | 25896. |
| NextBio | 47341. |
| SOURCE | Search... |
Entry information
| Entry name | INT7_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9NVH2 Secondary accession number(s): B4DLZ6 Q9UFM3 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 1 Human chromosome 1: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
