Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Repressor of yield of DENV protein

Gene

RYDEN

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Exhibits antiviral activity against dengue virus (DENV) and can inhibit the replication of all DENV serotypes. May block the protein translation of DENV RNA via its association with cellular mRNA-binding proteins and viral RNA. Can also limit the replication of hepatitis C virus (HCV), West Nile virus (WNV), Chikungunya virus (CHIKV), herpes simplex virus type 1 (HHV-1) and human adenovirus (PubMed:26735137).1 Publication

GO - Molecular functioni

  • RNA binding Source: UniProtKB

GO - Biological processi

  • defense response to virus Source: UniProtKB
  • negative regulation of viral genome replication Source: UniProtKB
  • response to interferon-gamma Source: UniProtKB
  • response to type III interferon Source: UniProtKB
  • response to type I interferon Source: UniProtKB
Complete GO annotation...

Keywords - Biological processi

Antiviral defense

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Repressor of yield of DENV protein1 Publication
Short name:
RyDEN1 Publication
Gene namesi
Name:RYDEN1 Publication
Synonyms:C19orf66
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 19

Organism-specific databases

HGNCiHGNC:25649. C19orf66.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: UniProtKB
  • nucleus Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Mutagenesisi121 – 13717RRVPQ…RKCRK → AAVPQAAEVSACAACAA: Decreased efficiency in the interaction with PABPC1 and reduced inhibitory activity against DENV replication. 1 PublicationAdd
BLAST

Organism-specific databases

PharmGKBiPA162378809.

Polymorphism and mutation databases

BioMutaiC19orf66.
DMDMi172044675.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedCombined sources
Chaini2 – 291290Repressor of yield of DENV proteinPRO_0000318701Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei2 – 21N-acetylserineCombined sources

Keywords - PTMi

Acetylation

Proteomic databases

EPDiQ9NUL5.
MaxQBiQ9NUL5.
PaxDbiQ9NUL5.
PeptideAtlasiQ9NUL5.
PRIDEiQ9NUL5.

PTM databases

iPTMnetiQ9NUL5.
PhosphoSiteiQ9NUL5.

Expressioni

Inductioni

Up-regulated by interferon (IFN) treatment.1 Publication

Gene expression databases

BgeeiQ9NUL5.
CleanExiHS_C19orf66.
ExpressionAtlasiQ9NUL5. baseline and differential.
GenevisibleiQ9NUL5. HS.

Organism-specific databases

HPAiHPA042001.

Interactioni

Subunit structurei

Interacts with PABPC1 (PubMed:26735137). Found in a complex with PABPC1 and LARP1 (PubMed:26735137).1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
ADAMTSL4Q6UY14-33EBI-10313866,EBI-10173507
CADPSA2RRN73EBI-10313866,EBI-10179719
CCDC136Q96JN2-23EBI-10313866,EBI-10171416
DRICH1Q6PGQ13EBI-10313866,EBI-10253641
DTNBP1Q96EV83EBI-10313866,EBI-465804
IKZF1Q134223EBI-10313866,EBI-745305
KRT40Q6A1623EBI-10313866,EBI-10171697
KRTAP10-5P603703EBI-10313866,EBI-10172150
KRTAP10-7P604093EBI-10313866,EBI-10172290
KRTAP10-8P604103EBI-10313866,EBI-10171774
KRTAP10-9P604113EBI-10313866,EBI-10172052
KRTAP2-3P0C7H83EBI-10313866,EBI-10196781
KRTAP4-12Q9BQ663EBI-10313866,EBI-739863
KRTAP4-2Q9BYR53EBI-10313866,EBI-10172511
KRTAP5-9P263713EBI-10313866,EBI-3958099
KRTAP9-2Q9BYQ43EBI-10313866,EBI-1044640
LZTS2Q9BRK43EBI-10313866,EBI-741037
MAGEA1P433553EBI-10313866,EBI-740978
MDFIQ997503EBI-10313866,EBI-724076
MEOX2A4D1273EBI-10313866,EBI-10172134
MID2Q9UJV3-23EBI-10313866,EBI-10172526
MTUS2Q5JR593EBI-10313866,EBI-742948
NOTCH2NLQ7Z3S93EBI-10313866,EBI-945833
PDE4DIPQ5VU433EBI-10313866,EBI-1105124
SPRY2O435973EBI-10313866,EBI-742487
SSX2IPQ9Y2D83EBI-10313866,EBI-2212028
TCF4P158843EBI-10313866,EBI-533224
TERF1P542742EBI-10313866,EBI-710997
TNS2Q63HR24EBI-10313866,EBI-949753
TRAF1Q130773EBI-10313866,EBI-359224

Protein-protein interaction databases

BioGridi120618. 33 interactions.
IntActiQ9NUL5. 30 interactions.
MINTiMINT-7032143.
STRINGi9606.ENSP00000253110.

Structurei

3D structure databases

ProteinModelPortaliQ9NUL5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni102 – 15049Interaction with PABPC11 PublicationAdd
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi121 – 13717Nuclear localization signal1 PublicationAdd
BLAST
Motifi261 – 2699Nuclear export signal1 Publication

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi262 – 29130Asp/Glu-rich (acidic)Add
BLAST

Sequence similaritiesi

Belongs to the RyDEN family.Curated

Phylogenomic databases

eggNOGiENOG410IPDV. Eukaryota.
ENOG4110MZD. LUCA.
GeneTreeiENSGT00390000005065.
HOGENOMiHOG000111999.
HOVERGENiHBG061512.
InParanoidiQ9NUL5.
OMAiMWGVAEF.
OrthoDBiEOG7ZPNKM.
PhylomeDBiQ9NUL5.
TreeFamiTF337433.

Family and domain databases

InterProiIPR026795. RyDEN.
[Graphical view]
PANTHERiPTHR16135. PTHR16135. 1 hit.
PfamiPF15135. UPF0515. 1 hit.
[Graphical view]

Sequences (4)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 4 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9NUL5-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSQEGVELEK SVRRLREKFH GKVSSKKAGA LMRKFGSDHT GVGRSIVYGV
60 70 80 90 100
KQKDGQELSN DLDAQDPPED MKQDRDIQAV ATSLLPLTEA NLRMFQRAQD
110 120 130 140 150
DLIPAVDRQF ACSSCDHVWW RRVPQRKEVS RCRKCRKRYE PVPADKMWGL
160 170 180 190 200
AEFHCPKCRH NFRGWAQMGS PSPCYGCGFP VYPTRILPPR WDRDPDRRST
210 220 230 240 250
HTHSCSAADC YNRREPHVPG TSCAHPKSRK QNHLPKVLHP SNPHISSGST
260 270 280 290
VATCLSQGGL LEDLDNLILE DLKEEEEEEE EVEDEEGGPR E
Length:291
Mass (Da):33,110
Last modified:February 26, 2008 - v2
Checksum:iD6513814B96BDAF6
GO
Isoform 2 (identifier: Q9NUL5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-65: MSQEGVELEK...QELSNDLDAQ → MSQHQQACGICRQE

Note: No experimental confirmation available.
Show »
Length:240
Mass (Da):27,524
Checksum:iAF8580711EA1F41B
GO
Isoform 3 (identifier: Q9NUL5-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     164-291: Missing.

Show »
Length:163
Mass (Da):18,871
Checksum:iBBB6A14F1DA8ECD7
GO
Isoform 4 (identifier: Q9NUL5-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     164-199: Missing.

Show »
Length:255
Mass (Da):29,006
Checksum:i466D43FA57D26D25
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti191 – 1911W → R in BAA92109 (PubMed:14702039).Curated
Sequence conflicti249 – 2491S → P in BAA92109 (PubMed:14702039).Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 6565MSQEG…DLDAQ → MSQHQQACGICRQE in isoform 2. 1 PublicationVSP_031272Add
BLAST
Alternative sequencei164 – 291128Missing in isoform 3. 1 PublicationVSP_031273Add
BLAST
Alternative sequencei164 – 19936Missing in isoform 4. 1 PublicationVSP_031274Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK002148 mRNA. Translation: BAA92109.1.
AK096142 mRNA. Translation: BAC04710.1.
AC020931 Genomic DNA. No translation available.
CH471106 Genomic DNA. Translation: EAW84066.1.
CH471106 Genomic DNA. Translation: EAW84068.1.
CH471106 Genomic DNA. Translation: EAW84069.1.
BC010847 mRNA. Translation: AAH10847.1.
BC026180 mRNA. Translation: AAH26180.1.
BC035817 mRNA. Translation: AAH35817.1.
CCDSiCCDS45957.1. [Q9NUL5-1]
CCDS77231.1. [Q9NUL5-4]
RefSeqiNP_001295206.1. NM_001308277.1. [Q9NUL5-4]
NP_060851.2. NM_018381.3. [Q9NUL5-1]
UniGeneiHs.655613.

Genome annotation databases

EnsembliENST00000253110; ENSP00000253110; ENSG00000130813. [Q9NUL5-1]
ENST00000397881; ENSP00000380978; ENSG00000130813. [Q9NUL5-2]
ENST00000591813; ENSP00000467182; ENSG00000130813. [Q9NUL5-4]
GeneIDi55337.
KEGGihsa:55337.
UCSCiuc002mmu.5. human. [Q9NUL5-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK002148 mRNA. Translation: BAA92109.1.
AK096142 mRNA. Translation: BAC04710.1.
AC020931 Genomic DNA. No translation available.
CH471106 Genomic DNA. Translation: EAW84066.1.
CH471106 Genomic DNA. Translation: EAW84068.1.
CH471106 Genomic DNA. Translation: EAW84069.1.
BC010847 mRNA. Translation: AAH10847.1.
BC026180 mRNA. Translation: AAH26180.1.
BC035817 mRNA. Translation: AAH35817.1.
CCDSiCCDS45957.1. [Q9NUL5-1]
CCDS77231.1. [Q9NUL5-4]
RefSeqiNP_001295206.1. NM_001308277.1. [Q9NUL5-4]
NP_060851.2. NM_018381.3. [Q9NUL5-1]
UniGeneiHs.655613.

3D structure databases

ProteinModelPortaliQ9NUL5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi120618. 33 interactions.
IntActiQ9NUL5. 30 interactions.
MINTiMINT-7032143.
STRINGi9606.ENSP00000253110.

PTM databases

iPTMnetiQ9NUL5.
PhosphoSiteiQ9NUL5.

Polymorphism and mutation databases

BioMutaiC19orf66.
DMDMi172044675.

Proteomic databases

EPDiQ9NUL5.
MaxQBiQ9NUL5.
PaxDbiQ9NUL5.
PeptideAtlasiQ9NUL5.
PRIDEiQ9NUL5.

Protocols and materials databases

DNASUi55337.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000253110; ENSP00000253110; ENSG00000130813. [Q9NUL5-1]
ENST00000397881; ENSP00000380978; ENSG00000130813. [Q9NUL5-2]
ENST00000591813; ENSP00000467182; ENSG00000130813. [Q9NUL5-4]
GeneIDi55337.
KEGGihsa:55337.
UCSCiuc002mmu.5. human. [Q9NUL5-1]

Organism-specific databases

CTDi55337.
GeneCardsiC19orf66.
HGNCiHGNC:25649. C19orf66.
HPAiHPA042001.
neXtProtiNX_Q9NUL5.
PharmGKBiPA162378809.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IPDV. Eukaryota.
ENOG4110MZD. LUCA.
GeneTreeiENSGT00390000005065.
HOGENOMiHOG000111999.
HOVERGENiHBG061512.
InParanoidiQ9NUL5.
OMAiMWGVAEF.
OrthoDBiEOG7ZPNKM.
PhylomeDBiQ9NUL5.
TreeFamiTF337433.

Miscellaneous databases

ChiTaRSiC19orf66. human.
GenomeRNAii55337.
PROiQ9NUL5.

Gene expression databases

BgeeiQ9NUL5.
CleanExiHS_C19orf66.
ExpressionAtlasiQ9NUL5. baseline and differential.
GenevisibleiQ9NUL5. HS.

Family and domain databases

InterProiIPR026795. RyDEN.
[Graphical view]
PANTHERiPTHR16135. PTHR16135. 1 hit.
PfamiPF15135. UPF0515. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Tissue: Liver and Placenta.
  2. "The DNA sequence and biology of human chromosome 19."
    Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J., Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M., Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E., Caenepeel S., Carrano A.V.
    , Caoile C., Chan Y.M., Christensen M., Cleland C.A., Copeland A., Dalin E., Dehal P., Denys M., Detter J.C., Escobar J., Flowers D., Fotopulos D., Garcia C., Georgescu A.M., Glavina T., Gomez M., Gonzales E., Groza M., Hammon N., Hawkins T., Haydu L., Ho I., Huang W., Israni S., Jett J., Kadner K., Kimball H., Kobayashi A., Larionov V., Leem S.-H., Lopez F., Lou Y., Lowry S., Malfatti S., Martinez D., McCready P.M., Medina C., Morgan J., Nelson K., Nolan M., Ovcharenko I., Pitluck S., Pollard M., Popkie A.P., Predki P., Quan G., Ramirez L., Rash S., Retterer J., Rodriguez A., Rogers S., Salamov A., Salazar A., She X., Smith D., Slezak T., Solovyev V., Thayer N., Tice H., Tsai M., Ustaszewska A., Vo N., Wagner M., Wheeler J., Wu K., Xie G., Yang J., Dubchak I., Furey T.S., DeJong P., Dickson M., Gordon D., Eichler E.E., Pennacchio L.A., Richardson P., Stubbs L., Rokhsar D.S., Myers R.M., Rubin E.M., Lucas S.M.
    Nature 428:529-535(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 3 AND 4).
    Tissue: Lymph, Pancreas and Testis.
  5. Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT SER-2, CLEAVAGE OF INITIATOR METHIONINE [LARGE SCALE ANALYSIS], IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  6. "An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome."
    Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D., Wang L., Ye M., Zou H.
    J. Proteomics 96:253-262(2014) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Liver.
  7. Cited for: IDENTIFICATION BY MASS SPECTROMETRY, FUNCTION, SUBCELLULAR LOCATION, INDUCTION, INTERACTION WITH PABPC1, IDENTIFICATION IN A COMPLEX WITH PABPC1 AND LARP1, MUTAGENESIS OF 121-ARG--ARG-137, NUCLEAR LOCALIZATION SIGNAL, NUCLEAR EXPORT SIGNAL.

Entry informationi

Entry nameiRYDEN_HUMAN
AccessioniPrimary (citable) accession number: Q9NUL5
Secondary accession number(s): A8MQT9
, Q4G188, Q8IYH6, Q8N8V1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: February 26, 2008
Last modified: July 6, 2016
This is version 99 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 19
    Human chromosome 19: entries, gene names and cross-references to MIM
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.