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Q9NUD7

- CT096_HUMAN

UniProt

Q9NUD7 - CT096_HUMAN

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Protein
Uncharacterized protein C20orf96
Gene
C20orf96
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein C20orf96
Gene namesi
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 20

Organism-specific databases

HGNCiHGNC:16227. C20orf96.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA25803.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 363363Uncharacterized protein C20orf96
PRO_0000079450Add
BLAST

Proteomic databases

PaxDbiQ9NUD7.
PRIDEiQ9NUD7.

PTM databases

PhosphoSiteiQ9NUD7.

Expressioni

Gene expression databases

ArrayExpressiQ9NUD7.
BgeeiQ9NUD7.
CleanExiHS_C20orf96.
GenevestigatoriQ9NUD7.

Organism-specific databases

HPAiHPA048649.

Interactioni

Protein-protein interaction databases

BioGridi126645. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliQ9NUD7.

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili109 – 329221 Reviewed prediction
Add
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi264 – 2685Poly-Lys

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiNOG25990.
HOGENOMiHOG000112025.
HOVERGENiHBG051181.
InParanoidiQ9NUD7.
OMAiVPWQQSK.
PhylomeDBiQ9NUD7.
TreeFamiTF330721.

Family and domain databases

InterProiIPR029236. DUF4618.
[Graphical view]
PfamiPF15397. DUF4618. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9NUD7-1 [UniParc]FASTAAdd to Basket

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MAHVLQKPKH SGTHSIVQEF QVPDYVPWQQ SKQETKPSTL PPVQQANSLH    50
TSKMKTLTRV QPVFHFKPTT VVTSCQPKNP RELHRRRKLD PGKMHAKIWL 100
MKTSLRSGRA ALRELRSREN FLSKLNRELI ETIQEMENST TLHVRALLQQ 150
QDTLATIIDI LEYSNKKRLQ QLKSELQEWE EKKKCKMSYL EQQAEQLNAK 200
IEKTQEEVNF LSTYMDHEYS IKSVQISTLM RQLQQVKDSQ QDELDDLGEM 250
RRKVLESLSD KIQKKKKKIL SSVVAETQRP YEEALLQKMW ESQDFLKCMQ 300
RFREIIDQFE ENMPVLRAEV EELQAQTREP REVIFEDVLL RRPKCTPDMD 350
VILNIPVEEP LPF 363
Length:363
Mass (Da):42,859
Last modified:June 1, 2001 - v2
Checksum:i0B1A597E972A7EAD
GO

Sequence cautioni

The sequence BAC03772.1 differs from that shown. Reason: Frameshift at position 304.

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti305 – 3051I → F.3 Publications
Corresponds to variant rs3827147 [ dbSNP | Ensembl ].
VAR_056847

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK097394 mRNA. Translation: BAC05033.1.
AK091924 mRNA. Translation: BAC03772.1. Frameshift.
AL034548 Genomic DNA. Translation: CAB81629.2.
CH471133 Genomic DNA. Translation: EAX10681.1.
BC134417 mRNA. Translation: AAI34418.1.
BC137450 mRNA. Translation: AAI37451.1.
CCDSiCCDS12994.1.
RefSeqiNP_542138.1. NM_080571.1.
NP_695001.2. NM_153269.2.
UniGeneiHs.348112.

Genome annotation databases

EnsembliENST00000360321; ENSP00000353470; ENSG00000196476.
GeneIDi140680.
KEGGihsa:140680.
UCSCiuc002wde.2. human.

Polymorphism databases

DMDMi26392576.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK097394 mRNA. Translation: BAC05033.1 .
AK091924 mRNA. Translation: BAC03772.1 . Frameshift.
AL034548 Genomic DNA. Translation: CAB81629.2 .
CH471133 Genomic DNA. Translation: EAX10681.1 .
BC134417 mRNA. Translation: AAI34418.1 .
BC137450 mRNA. Translation: AAI37451.1 .
CCDSi CCDS12994.1.
RefSeqi NP_542138.1. NM_080571.1.
NP_695001.2. NM_153269.2.
UniGenei Hs.348112.

3D structure databases

ProteinModelPortali Q9NUD7.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 126645. 1 interaction.

PTM databases

PhosphoSitei Q9NUD7.

Polymorphism databases

DMDMi 26392576.

Proteomic databases

PaxDbi Q9NUD7.
PRIDEi Q9NUD7.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000360321 ; ENSP00000353470 ; ENSG00000196476 .
GeneIDi 140680.
KEGGi hsa:140680.
UCSCi uc002wde.2. human.

Organism-specific databases

CTDi 140680.
GeneCardsi GC20M000246.
HGNCi HGNC:16227. C20orf96.
HPAi HPA048649.
neXtProti NX_Q9NUD7.
PharmGKBi PA25803.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG25990.
HOGENOMi HOG000112025.
HOVERGENi HBG051181.
InParanoidi Q9NUD7.
OMAi VPWQQSK.
PhylomeDBi Q9NUD7.
TreeFami TF330721.

Miscellaneous databases

ChiTaRSi C20orf96. human.
GenomeRNAii 140680.
NextBioi 84213.

Gene expression databases

ArrayExpressi Q9NUD7.
Bgeei Q9NUD7.
CleanExi HS_C20orf96.
Genevestigatori Q9NUD7.

Family and domain databases

InterProi IPR029236. DUF4618.
[Graphical view ]
Pfami PF15397. DUF4618. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT PHE-305.
    Tissue: Kidney and Testis.
  2. "The DNA sequence and comparative analysis of human chromosome 20."
    Deloukas P., Matthews L.H., Ashurst J.L., Burton J., Gilbert J.G.R., Jones M., Stavrides G., Almeida J.P., Babbage A.K., Bagguley C.L., Bailey J., Barlow K.F., Bates K.N., Beard L.M., Beare D.M., Beasley O.P., Bird C.P., Blakey S.E.
    , Bridgeman A.M., Brown A.J., Buck D., Burrill W.D., Butler A.P., Carder C., Carter N.P., Chapman J.C., Clamp M., Clark G., Clark L.N., Clark S.Y., Clee C.M., Clegg S., Cobley V.E., Collier R.E., Connor R.E., Corby N.R., Coulson A., Coville G.J., Deadman R., Dhami P.D., Dunn M., Ellington A.G., Frankland J.A., Fraser A., French L., Garner P., Grafham D.V., Griffiths C., Griffiths M.N.D., Gwilliam R., Hall R.E., Hammond S., Harley J.L., Heath P.D., Ho S., Holden J.L., Howden P.J., Huckle E., Hunt A.R., Hunt S.E., Jekosch K., Johnson C.M., Johnson D., Kay M.P., Kimberley A.M., King A., Knights A., Laird G.K., Lawlor S., Lehvaeslaiho M.H., Leversha M.A., Lloyd C., Lloyd D.M., Lovell J.D., Marsh V.L., Martin S.L., McConnachie L.J., McLay K., McMurray A.A., Milne S.A., Mistry D., Moore M.J.F., Mullikin J.C., Nickerson T., Oliver K., Parker A., Patel R., Pearce T.A.V., Peck A.I., Phillimore B.J.C.T., Prathalingam S.R., Plumb R.W., Ramsay H., Rice C.M., Ross M.T., Scott C.E., Sehra H.K., Shownkeen R., Sims S., Skuce C.D., Smith M.L., Soderlund C., Steward C.A., Sulston J.E., Swann R.M., Sycamore N., Taylor R., Tee L., Thomas D.W., Thorpe A., Tracey A., Tromans A.C., Vaudin M., Wall M., Wallis J.M., Whitehead S.L., Whittaker P., Willey D.L., Williams L., Williams S.A., Wilming L., Wray P.W., Hubbard T., Durbin R.M., Bentley D.R., Beck S., Rogers J.
    Nature 414:865-871(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT PHE-305.
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT PHE-305.
    Tissue: Brain.

Entry informationi

Entry nameiCT096_HUMAN
AccessioniPrimary (citable) accession number: Q9NUD7
Secondary accession number(s): A3KPE0
, B2RPH9, Q8N840, Q8NAX5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2002
Last sequence update: June 1, 2001
Last modified: July 9, 2014
This is version 82 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 20
    Human chromosome 20: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations

External Data

Dasty 3

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