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Q9NUD7

- CT096_HUMAN

UniProt

Q9NUD7 - CT096_HUMAN

Protein

Uncharacterized protein C20orf96

Gene

C20orf96

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 83 (01 Oct 2014)
      Sequence version 2 (01 Jun 2001)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized protein C20orf96
    Gene namesi
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 20

    Organism-specific databases

    HGNCiHGNC:16227. C20orf96.

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA25803.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 363363Uncharacterized protein C20orf96PRO_0000079450Add
    BLAST

    Proteomic databases

    PaxDbiQ9NUD7.
    PRIDEiQ9NUD7.

    PTM databases

    PhosphoSiteiQ9NUD7.

    Expressioni

    Gene expression databases

    ArrayExpressiQ9NUD7.
    BgeeiQ9NUD7.
    CleanExiHS_C20orf96.
    GenevestigatoriQ9NUD7.

    Organism-specific databases

    HPAiHPA048649.

    Interactioni

    Protein-protein interaction databases

    BioGridi126645. 1 interaction.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9NUD7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Coiled coil

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Coiled coili109 – 329221Sequence AnalysisAdd
    BLAST

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi264 – 2685Poly-Lys

    Keywords - Domaini

    Coiled coil

    Phylogenomic databases

    eggNOGiNOG25990.
    HOGENOMiHOG000112025.
    HOVERGENiHBG051181.
    InParanoidiQ9NUD7.
    OMAiVPWQQSK.
    PhylomeDBiQ9NUD7.
    TreeFamiTF330721.

    Family and domain databases

    InterProiIPR029236. DUF4618.
    [Graphical view]
    PfamiPF15397. DUF4618. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9NUD7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAHVLQKPKH SGTHSIVQEF QVPDYVPWQQ SKQETKPSTL PPVQQANSLH    50
    TSKMKTLTRV QPVFHFKPTT VVTSCQPKNP RELHRRRKLD PGKMHAKIWL 100
    MKTSLRSGRA ALRELRSREN FLSKLNRELI ETIQEMENST TLHVRALLQQ 150
    QDTLATIIDI LEYSNKKRLQ QLKSELQEWE EKKKCKMSYL EQQAEQLNAK 200
    IEKTQEEVNF LSTYMDHEYS IKSVQISTLM RQLQQVKDSQ QDELDDLGEM 250
    RRKVLESLSD KIQKKKKKIL SSVVAETQRP YEEALLQKMW ESQDFLKCMQ 300
    RFREIIDQFE ENMPVLRAEV EELQAQTREP REVIFEDVLL RRPKCTPDMD 350
    VILNIPVEEP LPF 363
    Length:363
    Mass (Da):42,859
    Last modified:June 1, 2001 - v2
    Checksum:i0B1A597E972A7EAD
    GO

    Sequence cautioni

    The sequence BAC03772.1 differs from that shown. Reason: Frameshift at position 304.

    Natural variant

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Natural varianti305 – 3051I → F.3 Publications
    Corresponds to variant rs3827147 [ dbSNP | Ensembl ].
    VAR_056847

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK097394 mRNA. Translation: BAC05033.1.
    AK091924 mRNA. Translation: BAC03772.1. Frameshift.
    AL034548 Genomic DNA. Translation: CAB81629.2.
    CH471133 Genomic DNA. Translation: EAX10681.1.
    BC134417 mRNA. Translation: AAI34418.1.
    BC137450 mRNA. Translation: AAI37451.1.
    CCDSiCCDS12994.1.
    RefSeqiNP_542138.1. NM_080571.1.
    NP_695001.2. NM_153269.2.
    UniGeneiHs.348112.

    Genome annotation databases

    EnsembliENST00000360321; ENSP00000353470; ENSG00000196476.
    GeneIDi140680.
    KEGGihsa:140680.
    UCSCiuc002wde.2. human.

    Polymorphism databases

    DMDMi26392576.

    Keywords - Coding sequence diversityi

    Polymorphism

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK097394 mRNA. Translation: BAC05033.1 .
    AK091924 mRNA. Translation: BAC03772.1 . Frameshift.
    AL034548 Genomic DNA. Translation: CAB81629.2 .
    CH471133 Genomic DNA. Translation: EAX10681.1 .
    BC134417 mRNA. Translation: AAI34418.1 .
    BC137450 mRNA. Translation: AAI37451.1 .
    CCDSi CCDS12994.1.
    RefSeqi NP_542138.1. NM_080571.1.
    NP_695001.2. NM_153269.2.
    UniGenei Hs.348112.

    3D structure databases

    ProteinModelPortali Q9NUD7.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 126645. 1 interaction.

    PTM databases

    PhosphoSitei Q9NUD7.

    Polymorphism databases

    DMDMi 26392576.

    Proteomic databases

    PaxDbi Q9NUD7.
    PRIDEi Q9NUD7.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000360321 ; ENSP00000353470 ; ENSG00000196476 .
    GeneIDi 140680.
    KEGGi hsa:140680.
    UCSCi uc002wde.2. human.

    Organism-specific databases

    CTDi 140680.
    GeneCardsi GC20M000246.
    HGNCi HGNC:16227. C20orf96.
    HPAi HPA048649.
    neXtProti NX_Q9NUD7.
    PharmGKBi PA25803.
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi NOG25990.
    HOGENOMi HOG000112025.
    HOVERGENi HBG051181.
    InParanoidi Q9NUD7.
    OMAi VPWQQSK.
    PhylomeDBi Q9NUD7.
    TreeFami TF330721.

    Miscellaneous databases

    ChiTaRSi C20orf96. human.
    GenomeRNAii 140680.
    NextBioi 84213.

    Gene expression databases

    ArrayExpressi Q9NUD7.
    Bgeei Q9NUD7.
    CleanExi HS_C20orf96.
    Genevestigatori Q9NUD7.

    Family and domain databases

    InterProi IPR029236. DUF4618.
    [Graphical view ]
    Pfami PF15397. DUF4618. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
      Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
      , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
      Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT PHE-305.
      Tissue: Kidney and Testis.
    2. "The DNA sequence and comparative analysis of human chromosome 20."
      Deloukas P., Matthews L.H., Ashurst J.L., Burton J., Gilbert J.G.R., Jones M., Stavrides G., Almeida J.P., Babbage A.K., Bagguley C.L., Bailey J., Barlow K.F., Bates K.N., Beard L.M., Beare D.M., Beasley O.P., Bird C.P., Blakey S.E.
      , Bridgeman A.M., Brown A.J., Buck D., Burrill W.D., Butler A.P., Carder C., Carter N.P., Chapman J.C., Clamp M., Clark G., Clark L.N., Clark S.Y., Clee C.M., Clegg S., Cobley V.E., Collier R.E., Connor R.E., Corby N.R., Coulson A., Coville G.J., Deadman R., Dhami P.D., Dunn M., Ellington A.G., Frankland J.A., Fraser A., French L., Garner P., Grafham D.V., Griffiths C., Griffiths M.N.D., Gwilliam R., Hall R.E., Hammond S., Harley J.L., Heath P.D., Ho S., Holden J.L., Howden P.J., Huckle E., Hunt A.R., Hunt S.E., Jekosch K., Johnson C.M., Johnson D., Kay M.P., Kimberley A.M., King A., Knights A., Laird G.K., Lawlor S., Lehvaeslaiho M.H., Leversha M.A., Lloyd C., Lloyd D.M., Lovell J.D., Marsh V.L., Martin S.L., McConnachie L.J., McLay K., McMurray A.A., Milne S.A., Mistry D., Moore M.J.F., Mullikin J.C., Nickerson T., Oliver K., Parker A., Patel R., Pearce T.A.V., Peck A.I., Phillimore B.J.C.T., Prathalingam S.R., Plumb R.W., Ramsay H., Rice C.M., Ross M.T., Scott C.E., Sehra H.K., Shownkeen R., Sims S., Skuce C.D., Smith M.L., Soderlund C., Steward C.A., Sulston J.E., Swann R.M., Sycamore N., Taylor R., Tee L., Thomas D.W., Thorpe A., Tracey A., Tromans A.C., Vaudin M., Wall M., Wallis J.M., Whitehead S.L., Whittaker P., Willey D.L., Williams L., Williams S.A., Wilming L., Wray P.W., Hubbard T., Durbin R.M., Bentley D.R., Beck S., Rogers J.
      Nature 414:865-871(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT PHE-305.
    4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT PHE-305.
      Tissue: Brain.

    Entry informationi

    Entry nameiCT096_HUMAN
    AccessioniPrimary (citable) accession number: Q9NUD7
    Secondary accession number(s): A3KPE0
    , B2RPH9, Q8N840, Q8NAX5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 6, 2002
    Last sequence update: June 1, 2001
    Last modified: October 1, 2014
    This is version 83 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 20
      Human chromosome 20: entries, gene names and cross-references to MIM
    2. Human entries with polymorphisms or disease mutations
      List of human entries with polymorphisms or disease mutations
    3. Human polymorphisms and disease mutations
      Index of human polymorphisms and disease mutations

    External Data

    Dasty 3