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Protein

Uncharacterized protein C20orf96

Gene

C20orf96

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein C20orf96
Gene namesi
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 20

Organism-specific databases

HGNCiHGNC:16227. C20orf96.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA25803.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 363363Uncharacterized protein C20orf96PRO_0000079450Add
BLAST

Proteomic databases

PaxDbiQ9NUD7.
PRIDEiQ9NUD7.

PTM databases

PhosphoSiteiQ9NUD7.

Expressioni

Gene expression databases

BgeeiQ9NUD7.
CleanExiHS_C20orf96.
ExpressionAtlasiQ9NUD7. baseline and differential.
GenevestigatoriQ9NUD7.

Organism-specific databases

HPAiHPA048649.

Interactioni

Protein-protein interaction databases

BioGridi126645. 3 interactions.

Structurei

3D structure databases

ProteinModelPortaliQ9NUD7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili109 – 329221Sequence AnalysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi264 – 2685Poly-Lys

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiNOG25990.
GeneTreeiENSGT00390000003339.
HOGENOMiHOG000112025.
HOVERGENiHBG051181.
InParanoidiQ9NUD7.
OMAiVPWQQSK.
PhylomeDBiQ9NUD7.
TreeFamiTF330721.

Family and domain databases

InterProiIPR029236. DUF4618.
[Graphical view]
PfamiPF15397. DUF4618. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9NUD7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAHVLQKPKH SGTHSIVQEF QVPDYVPWQQ SKQETKPSTL PPVQQANSLH
60 70 80 90 100
TSKMKTLTRV QPVFHFKPTT VVTSCQPKNP RELHRRRKLD PGKMHAKIWL
110 120 130 140 150
MKTSLRSGRA ALRELRSREN FLSKLNRELI ETIQEMENST TLHVRALLQQ
160 170 180 190 200
QDTLATIIDI LEYSNKKRLQ QLKSELQEWE EKKKCKMSYL EQQAEQLNAK
210 220 230 240 250
IEKTQEEVNF LSTYMDHEYS IKSVQISTLM RQLQQVKDSQ QDELDDLGEM
260 270 280 290 300
RRKVLESLSD KIQKKKKKIL SSVVAETQRP YEEALLQKMW ESQDFLKCMQ
310 320 330 340 350
RFREIIDQFE ENMPVLRAEV EELQAQTREP REVIFEDVLL RRPKCTPDMD
360
VILNIPVEEP LPF
Length:363
Mass (Da):42,859
Last modified:June 1, 2001 - v2
Checksum:i0B1A597E972A7EAD
GO

Sequence cautioni

The sequence BAC03772.1 differs from that shown. Reason: Frameshift at position 304. Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti305 – 3051I → F.3 Publications
Corresponds to variant rs3827147 [ dbSNP | Ensembl ].
VAR_056847

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK097394 mRNA. Translation: BAC05033.1.
AK091924 mRNA. Translation: BAC03772.1. Frameshift.
AL034548 Genomic DNA. Translation: CAB81629.2.
CH471133 Genomic DNA. Translation: EAX10681.1.
BC134417 mRNA. Translation: AAI34418.1.
BC137450 mRNA. Translation: AAI37451.1.
CCDSiCCDS12994.1.
RefSeqiNP_542138.1. NM_080571.1.
NP_695001.2. NM_153269.2.
UniGeneiHs.348112.

Genome annotation databases

EnsembliENST00000360321; ENSP00000353470; ENSG00000196476.
GeneIDi140680.
KEGGihsa:140680.
UCSCiuc002wde.2. human.

Polymorphism databases

DMDMi26392576.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK097394 mRNA. Translation: BAC05033.1.
AK091924 mRNA. Translation: BAC03772.1. Frameshift.
AL034548 Genomic DNA. Translation: CAB81629.2.
CH471133 Genomic DNA. Translation: EAX10681.1.
BC134417 mRNA. Translation: AAI34418.1.
BC137450 mRNA. Translation: AAI37451.1.
CCDSiCCDS12994.1.
RefSeqiNP_542138.1. NM_080571.1.
NP_695001.2. NM_153269.2.
UniGeneiHs.348112.

3D structure databases

ProteinModelPortaliQ9NUD7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi126645. 3 interactions.

PTM databases

PhosphoSiteiQ9NUD7.

Polymorphism databases

DMDMi26392576.

Proteomic databases

PaxDbiQ9NUD7.
PRIDEiQ9NUD7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000360321; ENSP00000353470; ENSG00000196476.
GeneIDi140680.
KEGGihsa:140680.
UCSCiuc002wde.2. human.

Organism-specific databases

CTDi140680.
GeneCardsiGC20M000246.
HGNCiHGNC:16227. C20orf96.
HPAiHPA048649.
neXtProtiNX_Q9NUD7.
PharmGKBiPA25803.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG25990.
GeneTreeiENSGT00390000003339.
HOGENOMiHOG000112025.
HOVERGENiHBG051181.
InParanoidiQ9NUD7.
OMAiVPWQQSK.
PhylomeDBiQ9NUD7.
TreeFamiTF330721.

Miscellaneous databases

ChiTaRSiC20orf96. human.
GenomeRNAii140680.
NextBioi84213.

Gene expression databases

BgeeiQ9NUD7.
CleanExiHS_C20orf96.
ExpressionAtlasiQ9NUD7. baseline and differential.
GenevestigatoriQ9NUD7.

Family and domain databases

InterProiIPR029236. DUF4618.
[Graphical view]
PfamiPF15397. DUF4618. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT PHE-305.
    Tissue: Kidney and Testis.
  2. "The DNA sequence and comparative analysis of human chromosome 20."
    Deloukas P., Matthews L.H., Ashurst J.L., Burton J., Gilbert J.G.R., Jones M., Stavrides G., Almeida J.P., Babbage A.K., Bagguley C.L., Bailey J., Barlow K.F., Bates K.N., Beard L.M., Beare D.M., Beasley O.P., Bird C.P., Blakey S.E.
    , Bridgeman A.M., Brown A.J., Buck D., Burrill W.D., Butler A.P., Carder C., Carter N.P., Chapman J.C., Clamp M., Clark G., Clark L.N., Clark S.Y., Clee C.M., Clegg S., Cobley V.E., Collier R.E., Connor R.E., Corby N.R., Coulson A., Coville G.J., Deadman R., Dhami P.D., Dunn M., Ellington A.G., Frankland J.A., Fraser A., French L., Garner P., Grafham D.V., Griffiths C., Griffiths M.N.D., Gwilliam R., Hall R.E., Hammond S., Harley J.L., Heath P.D., Ho S., Holden J.L., Howden P.J., Huckle E., Hunt A.R., Hunt S.E., Jekosch K., Johnson C.M., Johnson D., Kay M.P., Kimberley A.M., King A., Knights A., Laird G.K., Lawlor S., Lehvaeslaiho M.H., Leversha M.A., Lloyd C., Lloyd D.M., Lovell J.D., Marsh V.L., Martin S.L., McConnachie L.J., McLay K., McMurray A.A., Milne S.A., Mistry D., Moore M.J.F., Mullikin J.C., Nickerson T., Oliver K., Parker A., Patel R., Pearce T.A.V., Peck A.I., Phillimore B.J.C.T., Prathalingam S.R., Plumb R.W., Ramsay H., Rice C.M., Ross M.T., Scott C.E., Sehra H.K., Shownkeen R., Sims S., Skuce C.D., Smith M.L., Soderlund C., Steward C.A., Sulston J.E., Swann R.M., Sycamore N., Taylor R., Tee L., Thomas D.W., Thorpe A., Tracey A., Tromans A.C., Vaudin M., Wall M., Wallis J.M., Whitehead S.L., Whittaker P., Willey D.L., Williams L., Williams S.A., Wilming L., Wray P.W., Hubbard T., Durbin R.M., Bentley D.R., Beck S., Rogers J.
    Nature 414:865-871(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT PHE-305.
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT PHE-305.
    Tissue: Brain.

Entry informationi

Entry nameiCT096_HUMAN
AccessioniPrimary (citable) accession number: Q9NUD7
Secondary accession number(s): A3KPE0
, B2RPH9, Q8N840, Q8NAX5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 6, 2002
Last sequence update: June 1, 2001
Last modified: January 7, 2015
This is version 85 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 20
    Human chromosome 20: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.