Reviewed,
UniProtKB/Swiss-Prot Q9NS23 (RASF1_HUMAN)
Last modified
July 7, 2009.
Version 72.
History...
Clusters with 100%,
90%,
50% identity |
Documents (5) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Ras association domain-containing protein 1 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Complete proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 344 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Potential tumor suppressor. Required for death receptor-dependent apoptosis. Mediates activation of STK4 during Fas-induced apoptosis. When associated with MOAP1, promotes BAX conformational change and translocation to mitochondrial membranes in response to TNF and TNFSF10 stimulation. Isoform A interacts with CDC20, an activator of the anaphase-promoting complex, APC, resulting in the inhibition of APC activity and mitotic progression. Inhibits proliferation by negatively regulating cell cycle progression at the level of G1/S-phase transition by regulating accumulation of cyclin D1 protein. Isoform C has been shown not to perform these roles, no function has been identified for this isoform. Ref.1 Ref.2 Ref.4 Ref.9 Ref.10 Ref.12 Ref.13 |
| Subunit structure | Interacts with MAP1S and XPA. Binds to the N-terminal of CDC20 during prometaphase. Binds to STK3 and STK4. Isoform A interacts with MOAP1 and E4F1. Recruited to the TNFRSF1A and TNFRSF10A complexes in response to their respective cognate ligand, after internalization. Can self-associate. Isoform A interacts with RSSF5 and probably associates with HRAS1 via a RSSF1 isoform A-RSSF5 heterodimer. Ref.1 Ref.9 Ref.10 Ref.12 Ref.13 Ref.5 Ref.7 Ref.8 Ref.11 |
| Subcellular location | Isoform A: Cytoplasm › cytoskeleton. Centrosome. Spindle. Note: Localizes to cytoplasmic microtubules during interphase, to bipolar centrosomes associated with microtubules during prophase, to spindle fibers and spindle poles at metaphase and anaphase, to the midzone during early telophase, and to the midbody in late telophase in cells. Ref.9 |
| Tissue specificity | Isoform A and isoform C are ubiquitously expressed in all tissues tested, however isoform A is absent in many corresponding cancer cell lines. Isoform B is mainly expressed in hematopoetic cells. Ref.1 Ref.2 |
| Sequence similarities | Contains 1 phorbol-ester/DAG-type zinc finger. Contains 1 Ras-associating domain. Contains 1 SARAH domain. |
| Sequence caution | The sequence AAB67312.1 differs from that shown. Reason: Erroneous gene model prediction. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| itself | 1 | EBI-438698,EBI-438698 | ||
| CDC20 | Q12834 | 2 | EBI-438698,EBI-367462 | |
| E4F1 | Q66K89 | 5 | EBI-438698,EBI-1227043 | |
| EWSR1 | Q01844 | 1 | EBI-438698,EBI-739737 | |
| EXOSC8 | Q96B26 | 1 | EBI-367363,EBI-371922 | |
| HRAS | P01112 | 2 | EBI-438698,EBI-350145 | |
| RASSF1 | Q9NS23-2 | 1 | EBI-438710,EBI-438698 | |
| RASSF1 | Q9NS23-4 | 1 | EBI-438698,EBI-438710 | |
| Rassf5 | Q5EBH1-2 | 1 | EBI-438698,EBI-960547 | From a different organism. |
| STK4 | Q13043 | 1 | EBI-438698,EBI-367376 |
Alternative products
| This entry describes 8 isoforms produced by alternative promoter usage and alternative splicing. [Align] [Select] | ||||||
| Isoform D Ref.2 (identifier: Q9NS23-1) Also known as: RASSF1D; Cardiac-specific; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Note: Produced by alternative promoter usage. | ||||||
| Isoform A Ref.1 Ref.2 (identifier: Q9NS23-2) Also known as: RASSF1A; The sequence of this isoform differs from the canonical sequence as follows: 84-88: RLSAD → H | ||||||
| Note: Localizes to cytoplasmic microtubules during interphase, to bipolar centrosomes associated with microtubules during prophase, to spindle fibers and spindle poles at metaphase and anaphase, to the midzone during early telophase, and to the midbody in late telophase in cells. Ref.9 Produced by alternative splicing of isoform D. | ||||||
| Isoform B Ref.1 (identifier: Q9NS23-3) Also known as: RASSF1B; The sequence of this isoform differs from the canonical sequence as follows: 1-155: Missing. | ||||||
| Note: Produced by alternative splicing of isoform D. | ||||||
| Isoform C Ref.1 Ref.2 (identifier: Q9NS23-4) Also known as: RASSF1C; The sequence of this isoform differs from the canonical sequence as follows: 1-74: Missing. 75-123: VVRKGLQCAR...EPAVERDTNV → MGEAEAPSFE...SLARRPRRDQ | ||||||
| Note: Predominantly nuclear. Ref.9 Produced by alternative promoter usage. | ||||||
| Isoform E Ref.2 (identifier: Q9NS23-5) Also known as: RASSF1E; Pancreas-specific; The sequence of this isoform differs from the canonical sequence as follows: 84-88: RLSAD → H 123-123: V → VPILQ | ||||||
| Note: Produced by alternative splicing of isoform D. | ||||||
| Isoform F Ref.2 (identifier: Q9NS23-6) Also known as: RASSF1F; The sequence of this isoform differs from the canonical sequence as follows: 85-91: LSADCKF → RACGVGD 93-344: Missing. | ||||||
| Note: Produced by alternative splicing of isoform D. | ||||||
| Isoform G Ref.2 (identifier: Q9NS23-7) Also known as: RASSF1G; The sequence of this isoform differs from the canonical sequence as follows: 84-149: RLSADCKFTC...EQKIKEYNAQ → QQGRFLHRLH...PACAVTHKGT 150-344: Missing. | ||||||
| Note: Produced by alternative splicing of isoform D. | ||||||
| Isoform H (identifier: Q9NS23-9) The sequence of this isoform differs from the canonical sequence as follows: 1-74: Missing. 75-123: VVRKGLQCAR...EPAVERDTNV → MGEAEAPSFE...SLARRPRRDQ 150-344: Missing. | ||||||
| Note: Produced by alternative splicing of isoform C. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 344 | 344 | Ras association domain-containing protein 1 | PRO_0000068891 | |||||
Regions | |||||||||
| Domain | 198 – 292 | 95 | Ras-associating | ||||||
| Domain | 294 – 341 | 48 | SARAH | ||||||
| Zinc finger | 51 – 105 | 55 | Phorbol-ester/DAG-type | ||||||
| Region | 1 – 119 | 119 | Mediates interaction with E4F1 | ||||||
| Region | 315 – 318 | 4 | MOAP1-binding | ||||||
Amino acid modifications | |||||||||
| Modified residue | 206 | 1 | Phosphothreonine Ref.14 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 155 | 155 | Missing in isoform B. Ref.1 | VSP_050770 | |||||
| Alternative sequence | 1 – 74 | 74 | Missing in isoform C and isoform H. Ref.1 Ref.2 | VSP_050773 | |||||
| Alternative sequence | 75 – 123 | 49 | VVRKG…RDTNV → MGEAEAPSFEMTWSSTTSSG YCSQEDSDSELEQYFTARTS LARRPRRDQ in isoform C and isoform H. Ref.1 Ref.2 | VSP_050774 | |||||
| Alternative sequence | 84 – 149 | 66 | RLSAD…EYNAQ → QQGRFLHRLHQGSAEAGAPC LCALQQEATLLAGCPAGPRT GHKCQAPHFLLPAQGCCQAP ACAVTHKGT in isoform G. Ref.2 | VSP_050775 | |||||
| Alternative sequence | 84 – 88 | 5 | RLSAD → H in isoform A and isoform E. Ref.1 Ref.2 | VSP_050771 | |||||
| Alternative sequence | 85 – 91 | 7 | LSADCKF → RACGVGD in isoform F. Ref.2 | VSP_050776 | |||||
| Alternative sequence | 93 – 344 | 252 | Missing in isoform F. Ref.2 | VSP_050777 | |||||
| Alternative sequence | 123 | 1 | V → VPILQ in isoform E. Ref.2 | VSP_050772 | |||||
| Alternative sequence | 150 – 344 | 195 | Missing in isoform G and isoform H. Ref.2 | VSP_050778 | |||||
| Natural variant | 21 | 1 | K → Q: dbSNP rs4688725. Ref.1 Ref.2 | VAR_019542 | |||||
| Natural variant | 53 | 1 | R → C Ref.2 | VAR_019543 | |||||
| Natural variant | 133 | 1 | D → E Ref.2 | VAR_019544 | |||||
| Natural variant | 135 | 1 | S → F Prevents G1 cell cycle arrest; reduced protein phosphorylation. Ref.4 | VAR_019545 | |||||
| Natural variant | 137 | 1 | A → S Prevents G1 cell cycle arrest; reduced protein phosphorylation. dbSNP rs2073498. Ref.2 Ref.4 | VAR_019546 | |||||
| Natural variant | 329 | 1 | Y → C Ref.2 | VAR_019547 | |||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Epigenetic inactivation of a RAS association domain family protein from the lung tumour suppressor locus 3p21.3." Dammann R., Li C., Yoon J.-H., Chin P.L., Bates S., Pfeifer G.P. Nat. Genet. 25:315-319(2000) [PubMed: 10888881] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS A; B AND C), FUNCTION, TISSUE SPECIFICITY, VARIANT GLN-21, INTERACTION WITH XPA. |
| [2] | "Epigenetic inactivation of RASSF1A in lung and breast cancers and malignant phenotype suppression." Burbee D.G., Forgacs E., Zochbauer-Muller S., Shivakumar L., Fong K., Gao B., Randle D., Kondo M., Virmani A., Bader S., Sekido Y., Latif F., Milchgrub S., Toyooka S., Gazdar A.F., Lerman M.I., Zabarovsky E., White M., Minna J.D. J. Natl. Cancer Inst. 93:691-699(2001) [PubMed: 11333291] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS A; C; D; E; F AND G), FUNCTION, TISSUE SPECIFICITY, VARIANTS GLN-21; CYS-53; GLU-133; SER-137 AND CYS-329. Tissue: Heart, Lung and Pancreas. |
| [3] | "The DNA sequence, annotation and analysis of human chromosome 3." Muzny D.M., Scherer S.E., Kaul R., Wang J., Yu J., Sudbrak R., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J. Gibbs R.A.Nature 440:1194-1198(2006) [PubMed: 16641997] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The RASSF1A tumor suppressor blocks cell cycle progression and inhibits cyclin D1 accumulation." Shivakumar L., Minna J., Sakamaki T., Pestell R., White M.A. Mol. Cell. Biol. 22:4309-4318(2002) [PubMed: 12024041] [Abstract] Cited for: FUNCTION, VARIANT PHE-135, CHARACTERIZATION OF VARIANTS PHE-135 AND SER-137. |
| [5] | "The putative tumor suppressor RASSF1A homodimerizes and heterodimerizes with the Ras-GTP binding protein Nore1." Ortiz-Vega S., Khokhlatchev A., Nedwidek M., Zhang X.F., Dammann R., Pfeifer G.P., Avruch J. Oncogene 21:1381-1390(2002) [PubMed: 11857081] [Abstract] Cited for: SELF-ASSOCIATION, INTERACTION WITH RSSF5 AND HRAS1. |
| [6] | Erratum Ortiz-Vega S., Khokhlatchev A., Nedwidek M., Zhang X.F., Dammann R., Pfeifer G.P., Avruch J. Oncogene 21:1943-1943(2002) |
| [7] | "Identification of the E1A-regulated transcription factor p120 E4F as an interacting partner of the RASSF1A candidate tumor suppressor gene." Fenton S.L., Dallol A., Agathanggelou A., Hesson L., Ahmed-Choudhury J., Baksh S., Sardet C., Dammann R., Minna J.D., Downward J., Maher E.R., Latif F. Cancer Res. 64:102-107(2004) [PubMed: 14729613] [Abstract] Cited for: INTERACTION WITH E4F1. |
| [8] | "RASSF1A interacts with microtubule-associated proteins and modulates microtubule dynamics." Dallol A., Agathanggelou A., Fenton S.L., Ahmed-Choudhury J., Hesson L., Vos M.D., Clark G.J., Downward J., Maher E.R., Latif F. Cancer Res. 64:4112-4116(2004) [PubMed: 15205320] [Abstract] Cited for: INTERACTION WITH MAP1S. |
| [9] | "The tumour suppressor RASSF1A regulates mitosis by inhibiting the APC-Cdc20 complex." Song M.S., Song S.J., Ayad N.G., Chang J.S., Lee J.H., Hong H.K., Lee H., Choi N., Kim J., Kim H., Kim J.W., Choi E.-J., Kirschner M.W., Lim D.-S. Nat. Cell Biol. 6:129-137(2004) [PubMed: 14743218] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION, INTERACTION WITH CDC20. |
| [10] | "Regulation of the MST1 kinase by autophosphorylation, by the growth inhibitory proteins, RASSF1 and NORE1, and by Ras." Praskova M., Khoklatchev A., Ortiz-Vega S., Avruch J. Biochem. J. 381:453-462(2004) [PubMed: 15109305] [Abstract] Cited for: FUNCTION, INTERACTION WITH STK3 AND STK4. |
| [11] | "Specificity of the methylation-suppressed A isoform of candidate tumor suppressor RASSF1 for microtubule hyperstabilization is determined by cell death inducer C19ORF5." Liu L., Vo A., McKeehan W.L. Cancer Res. 65:1830-1838(2005) [PubMed: 15753381] [Abstract] Cited for: INTERACTION WITH MAP1S. |
| [12] | "The tumor suppressor RASSF1A and MAP-1 link death receptor signaling to Bax conformational change and cell death." Baksh S., Tommasi S., Fenton S., Yu V.C., Martins L.M., Pfeifer G.P., Latif F., Downward J., Neel B.G. Mol. Cell 18:637-650(2005) [PubMed: 15949439] [Abstract] Cited for: INTERACTION WITH MOAP1, FUNCTION. |
| [13] | "Role of the tumor suppressor RASSF1A in Mst1-mediated apoptosis." Oh H.J., Lee K.-K., Song S.J., Jin M.S., Song M.S., Lee J.H., Im C.R., Lee J.-O., Yonehara S., Lim D.-S. Cancer Res. 66:2562-2569(2006) [PubMed: 16510573] [Abstract] Cited for: FUNCTION, INTERACTION WITH STK3 AND STK4. |
| [14] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-206, MASS SPECTROMETRY. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| AF061836 mRNA. Translation: AAC16001.1. AF132675 mRNA. Translation: AAD44174.1. AF132676 mRNA. Translation: AAD44175.1. AF132677 mRNA. Translation: AAD44176.1. AF040703 mRNA. Translation: AAC70910.2. AF102770 mRNA. Translation: AAF35127.2. AF102771 mRNA. Translation: AAF35128.2. AF102772 mRNA. Translation: AAF35129.2. AF286217 mRNA. Translation: AAG10038.1. AF291719 mRNA. Translation: AAG10064.1. AC002455 Genomic DNA. No translation available. AC002481 Genomic DNA. Translation: AAB67312.1. Sequence problems. | |
| IPI | IPI00172514. IPI00172661. IPI00221057. IPI00395780. IPI00426162. IPI00426164. IPI00426165. IPI00455193. |
| RefSeq | NP_009113.3. NP_733831.1. NP_733832.1. |
| UniGene | Hs.476270 |
3D structure databases | |
| HSSP | HSSP built from PDB template 1PTQ based on UniProtKB P28867. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9NS23. 13 interactions. |
PTM databases | |
| PhosphoSite | Q9NS23. |
Genome annotation databases | |
| Ensembl | ENSG00000068028. Homo sapiens. [Contig view] |
| GeneID | 11186. |
| KEGG | hsa:11186. |
| UCSC | uc003daa.1. human. uc003dad.1. human. |
Organism-specific databases | |
| GeneCards | GC03M050342. |
| H-InvDB | HIX0030705. |
| HGNC | HGNC:9882. RASSF1. |
| MIM | 605082. gene. |
| PharmGKB | PA34245. |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOVERGEN | Q9NS23. |
| OMA | Q9NS23. RDQDEAV. |
Gene expression databases | |
| ArrayExpress | Q9NS23. |
| Bgee | Q9NS23. |
| GermOnline | ENSG00000068028. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR002219. DAG_PE_bd. IPR000159. Ras-assoc. IPR011524. SARAH. [Graphical view] |
| Pfam | PF00130. C1_1. 1 hit. PF00788. RA. 1 hit. [Graphical view] |
| SMART | SM00109. C1. 1 hit. SM00314. RA. 1 hit. [Graphical view] |
| PROSITE | PS50200. RA. 1 hit. PS50951. SARAH. 1 hit. PS00479. ZF_DAG_PE_1. False negative. PS50081. ZF_DAG_PE_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 42571. |
| SOURCE | Search... |
Entry information
| Entry name | RASF1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9NS23 Secondary accession number(s): O14571 Q9UND5 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| Human chromosome 3 Human chromosome 3: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with


