Reviewed,
UniProtKB/Swiss-Prot Q9NRL2 (BAZ1A_HUMAN)
Last modified
December 15, 2009.
Version 98.
History...
Clusters with 100%,
90%,
50% identity |
Documents (5) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Bromodomain adjacent to zinc finger domain protein 1A Alternative name(s): ATP-utilizing chromatin assembly and remodeling factor 1 Short name=hACF1 ATP-dependent chromatin-remodeling protein Williams syndrome transcription factor-related chromatin-remodeling factor 180 Short name=WCRF180 Short name=hWALp1 CHRAC subunit ACF1 | ||||||
| Gene names |
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| Organism | Homo sapiens (Human) [Complete proteome] | ||||||
| Taxonomic identifier | 9606 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1556 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | May play a role in transcriptional regulation. May be involved in the formation or maintenance of heterochromatin playing a critical role in developmental control. |
| Subunit structure | Together with CHRAC1, POLE3 and SMARCA5 proteins, it forms the ISWI chromatin-remodeling complex, CHRAC. |
| Subcellular location | Nucleus. Note: May target the CHRAC complex to heterochromatin. |
| Tissue specificity | Highly expressed in testis and at low or undetectable levels in other tissues analyzed. |
| Miscellaneous | Stimulated by double-stranded DNA and nucleosomal DNA. |
| Sequence similarities | Belongs to the WAL family. Contains 1 bromo domain. Contains 1 DDT domain. Contains 1 PHD-type zinc finger. Contains 1 WAC domain. |
| Sequence caution | The sequence AAF28995.1 differs from that shown. Reason: Frameshift at several positions. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Transcription Transcription regulation |
| Cellular component | Nucleus |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Bromodomain Coiled coil Zinc-finger |
| Ligand | Metal-binding Zinc |
| PTM | Phosphoprotein |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | regulation of transcription Inferred from electronic annotation. Source: UniProtKB-KW transcriptionInferred from electronic annotation. Source: UniProtKB-KW |
| Molecular function | protein binding Inferred from electronic annotation. Source: InterPro zinc ion bindingInferred from electronic annotation. Source: UniProtKB-KW |
| Complete GO annotation... | |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9NRL2-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9NRL2-2) The sequence of this isoform differs from the canonical sequence as follows: 504-535: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1556 | 1556 | Bromodomain adjacent to zinc finger domain protein 1A | PRO_0000211167 | |||||
Regions | |||||||||
| Domain | 22 – 128 | 107 | WAC | ||||||
| Domain | 422 – 487 | 66 | DDT | ||||||
| Domain | 1446 – 1516 | 71 | Bromo | ||||||
| Zinc finger | 1148 – 1198 | 51 | PHD-type | ||||||
| Coiled coil | 306 – 397 | 92 | Potential | ||||||
| Coiled coil | 634 – 709 | 76 | Potential | ||||||
Amino acid modifications | |||||||||
| Modified residue | 270 | 1 | Phosphoserine | ||||||
| Modified residue | 606 | 1 | Phosphotyrosine Ref.7 | ||||||
| Modified residue | 702 | 1 | Phosphoserine | ||||||
| Modified residue | 731 | 1 | Phosphothreonine | ||||||
| Modified residue | 1279 | 1 | Phosphoserine Ref.8 | ||||||
| Modified residue | 1281 | 1 | Phosphoserine Ref.8 | ||||||
| Modified residue | 1339 | 1 | Phosphoserine Ref.10 | ||||||
| Modified residue | 1353 | 1 | Phosphoserine Ref.10 | ||||||
| Modified residue | 1363 | 1 | Phosphoserine Ref.10 | ||||||
| Modified residue | 1367 | 1 | Phosphothreonine Ref.10 | ||||||
| Modified residue | 1371 | 1 | Phosphoserine Ref.10 | ||||||
| Modified residue | 1402 | 1 | Phosphoserine Ref.10 | ||||||
| Modified residue | 1413 | 1 | Phosphoserine Ref.10 Ref.6 Ref.9 | ||||||
| Modified residue | 1417 | 1 | Phosphoserine Ref.10 Ref.6 | ||||||
| Modified residue | 1547 | 1 | Phosphothreonine Ref.10 | ||||||
Natural variations | |||||||||
| Alternative sequence | 504 – 535 | 32 | Missing in isoform 2. | VSP_000551 | |||||
| Natural variant | 344 | 1 | D → E: dbSNP rs1133285. | VAR_028049 | |||||
| Natural variant | 1366 | 1 | N → K: dbSNP rs1044140. Ref.1 Ref.5 | VAR_048423 | |||||
Experimental info | |||||||||
| Sequence conflict | 135 | 1 | R → T in BAA89209. Ref.3 | ||||||
| Sequence conflict | 236 | 1 | D → E in BAA89209. Ref.3 | ||||||
| Sequence conflict | 494 | 1 | K → Q in AAF28995. Ref.4 | ||||||
| Sequence conflict | 503 – 508 | 6 | KDLTEA → QDFTEP in AAF28995. Ref.4 | ||||||
| Sequence conflict | 525 | 1 | S → P in AAF28995. Ref.4 | ||||||
| Sequence conflict | 536 – 540 | 5 | GCSLK → AALKF in AAF28995. Ref.4 | ||||||
| Sequence conflict | 551 | 1 | E → D in AAF70601. Ref.1 | ||||||
| Sequence conflict | 730 | 1 | V → F in BAA89209. Ref.3 | ||||||
| Sequence conflict | 769 | 1 | P → L in BAA89209. Ref.3 | ||||||
| Sequence conflict | 1201 | 1 | S → C in BAA89209. Ref.3 | ||||||
| Sequence conflict | 1206 | 1 | S → F in BAA89209. Ref.3 | ||||||
| Sequence conflict | 1409 | 1 | R → K in AAF70601. Ref.1 | ||||||
| Sequence conflict | 1409 | 1 | R → K in CAB43261. Ref.5 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "HuCHRAC, a human ISWI chromatin remodelling complex contains hACF1 and two novel histone-fold proteins." Poot R.A., Dellaire G., Huelsmann B.B., Grimaldi M.A., Corona D.F.V., Becker P.B., Bickmore W.A., Varga-Weisz P.D. EMBO J. 19:3377-3387(2000) [PubMed: 10880450] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), MASS SPECTROMETRY, VARIANT LYS-1366. Tissue: Cervix carcinoma. |
| [2] | "A family of chromatin remodeling factors related to Williams syndrome transcription factor." Bochar D.A., Savard J., Wang W., Lafleur D.W., Moore P., Cote J., Shiekhattar R. Proc. Natl. Acad. Sci. U.S.A. 97:1038-1043(2000) [PubMed: 10655480] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2). |
| [3] | "A novel family of bromodomain genes." Jones M.H., Hamana N., Nezu J., Shimane M. Genomics 63:40-45(2000) [PubMed: 10662543] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). Tissue: Testis. |
| [4] | "Human partial CDS from CD34+ stem cells." Ye M., Zhang Q.-H., Zhou J., Shen Y., Wu X.-Y., Guan Z.Q., Wang L., Fan H.-Y., Mao Y.-F., Dai M., Huang Q.-H., Chen S.-J., Chen Z. Submitted (MAY-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-540 (ISOFORM 1). Tissue: Umbilical cord blood. |
| [5] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 746-1556 (ISOFORM 1), VARIANT LYS-1366. Tissue: Uterus. |
| [6] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed: 17081983] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1413 AND SER-1417, MASS SPECTROMETRY. Tissue: Epithelium. |
| [7] | "Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer." Rikova K., Guo A., Zeng Q., Possemato A., Yu J., Haack H., Nardone J., Lee K., Reeves C., Li Y., Hu Y., Tan Z., Stokes M., Sullivan L., Mitchell J., Wetzel R., Macneill J., Ren J.M. Comb M.J.Cell 131:1190-1203(2007) [PubMed: 18083107] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-606, MASS SPECTROMETRY. |
| [8] | "Evaluation of the low-specificity protease elastase for large-scale phosphoproteome analysis." Wang B., Malik R., Nigg E.A., Korner R. Anal. Chem. 80:9526-9533(2008) [PubMed: 19007248] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1279 AND SER-1281, MASS SPECTROMETRY. |
| [9] | "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis." Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III J. Proteome Res. 7:1346-1351(2008) [PubMed: 18220336] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1413, MASS SPECTROMETRY. |
| [10] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1339; SER-1353; SER-1363; THR-1367; SER-1371; SER-1402; SER-1413; SER-1417 AND THR-1547, MASS SPECTROMETRY. |
| [11] | Colinge J., Superti-Furga G., Bennett K.L. Submitted (OCT-2008) to UniProtKB Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
| [12] | "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach." Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S. Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1402, MASS SPECTROMETRY. |
| [13] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-270; SER-702 AND THR-731, MASS SPECTROMETRY. Tissue: T-cell. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| AF213467 mRNA. Translation: AAF70601.1. AF221130 mRNA. Translation: AAF32366.1. AB032252 mRNA. Translation: BAA89209.1. AF161435 mRNA. Translation: AAF28995.1. Frameshift. AL050089 mRNA. Translation: CAB43261.1. | |
| IPI | IPI00383565. IPI00412415. |
| PIR | T08738. |
| RefSeq | NP_038476.2. NP_872589.1. |
| UniGene | Hs.509140 |
3D structure databases | |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9NRL2. 2 interactions. |
| STRING | Q9NRL2. |
PTM databases | |
| PhosphoSite | Q9NRL2. |
Genome annotation databases | |
| Ensembl | ENST00000360310; ENSP00000353458; ENSG00000198604; Homo sapiens. [Genome view] ENST00000382422; ENSP00000371859; ENSG00000198604; Homo sapiens. [Genome view] |
| GeneID | 11177. |
| KEGG | hsa:11177. |
| UCSC | uc001wsk.1. human. uc001wsl.1. human. |
Organism-specific databases | |
| CTD | 11177. |
| GeneCards | GC14M034291. |
| H-InvDB | HIX0011594. |
| HGNC | HGNC:960. BAZ1A. |
| HPA | HPA002730. |
| MIM | 605680. gene. |
| PharmGKB | PA25270. |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOGENOM | HBG717122. |
| HOVERGEN | Q9NRL2. |
| InParanoid | Q9NRL2. |
| OMA | NGARLQC. |
| OrthoDB | EOG9N8TQT. |
Gene expression databases | |
| ArrayExpress | Q9NRL2. |
| Bgee | Q9NRL2. |
| CleanEx | HS_BAZ1A. |
| Genevestigator | Q9NRL2. |
| GermOnline | ENSG00000198604. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR001487. Bromodomain. IPR018359. Bromodomain_CS. IPR004022. DDT_dom. IPR018500. DDT_dom_subgr. IPR018501. DDT_dom_superfamily. IPR013136. WSTF_Acf1_Cbp146. IPR019786. Zinc_finger_PHD-type_CS. IPR011011. Znf_FYVE_PHD. IPR001965. Znf_PHD. IPR019787. Znf_PHD-finger. IPR001841. Znf_RING. [Graphical view] |
| Gene3D | G3DSA:1.20.920.10. Bromodomain. 1 hit. |
| Pfam | PF00439. Bromodomain. 1 hit. PF02791. DDT. 1 hit. PF00628. PHD. 1 hit. PF10537. WAC_Acf1_DNA_bd. 1 hit. [Graphical view] |
| PRINTS | PR00503. BROMODOMAIN. |
| SMART | SM00297. BROMO. 1 hit. SM00571. DDT. 1 hit. SM00249. PHD. 1 hit. SM00184. RING. 1 hit. [Graphical view] |
| PROSITE | PS00633. BROMODOMAIN_1. 1 hit. PS50014. BROMODOMAIN_2. 1 hit. PS50827. DDT. 1 hit. PS51136. WAC. 1 hit. PS01359. ZF_PHD_1. 1 hit. PS50016. ZF_PHD_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 42529. |
| SOURCE | Search... |
Entry information
| Entry name | BAZ1A_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9NRL2 Secondary accession number(s): Q9NZ15 Q9Y3V3 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 14 Human chromosome 14: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with


