Q9NR09 (BIRC6_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 116.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Baculoviral IAP repeat-containing protein 6 EC=6.3.2.- Alternative name(s): BIR repeat-containing ubiquitin-conjugating enzyme Short name=BRUCE Ubiquitin-conjugating BIR domain enzyme apollon Short name=APOLLON | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 4857 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Anti-apoptotic protein which can regulate cell death by controlling caspases and by acting as an E3 ubiquitin-protein ligase. Has an unusual ubiquitin conjugation system in that it could combine in a single polypeptide, ubiquitin conjugating (E2) with ubiquitin ligase (E3) activity, forming a chimeric E2/E3 ubiquitin ligase. Its tragets include CASP9 and DIABLO/SMAC. Acts as an inhibitor of CASP3, CASP7 and CASP9. Important regulator for the final stages of cytokinesis. Crucial for normal vesicle targeting to the site of abscission, but also for the integrity of the midbody and the midbody ring, and its striking ubiquitin modification. Ref.5 Ref.6 Ref.9 |
| Enzyme regulation | Inhibited by DIABLO/SMAC, HTRA2, CASP3, CASP6, CASP7 and CASP9. Ref.6 |
| Subunit structure | Homodimer. Binds the activated, processed forms of CASP3, CASP6, CASP7 and CASP9. Interacts with RNF41, DIABLO/SMAC, HTRA2, KIF23/MKLP1, USP8/UBPY, BIRC5/survivin, MAP2K1/MEK1, RAB8A/RAB8, RAB11A/RAB11, PLK1, EXOC3/SEC6 and EXOC4/SEC8. Ref.5 Ref.6 Ref.9 |
| Subcellular location | Golgi apparatus › trans-Golgi network membrane. Midbody. Endosome. Cytoplasm › cytoskeleton › spindle pole. Cytoplasm › cytoskeleton › centrosome. Note: Concentrates in a pericentriolar compartment in interphase, moves partially to spindle poles in metaphase, and finally localizes to the spindle midzone and the midbody in telophase and during cytokinesis. Ref.9 |
| Tissue specificity | Expressed in brain cancer cells. |
| Domain | The BIR domain is essential for its antiapoptotic function and is important for binding to DIABLO/SMAC and CASP9. Ref.6 |
| Post-translational modification | Ubiquitinated. Ubiquitination is mediated by the RNF41 E3 ligase and leads to proteasomal degradation, impairing inhibition of apoptosis. Deubiquitinated by USP8/UBPY. Ref.5 Ref.9 |
| Sequence similarities | In the C-terminal section; belongs to the ubiquitin-conjugating enzyme family. Contains 1 BIR repeat. |
| Sequence caution | The sequence BAA86603.2 differs from that shown. Reason: Frameshift at position 2047. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| EXOC4 | Q96A65 | 3 | EBI-1765160,EBI-355383 | |
| KIF23 | Q02241 | 4 | EBI-1765160,EBI-306852 | |
| MAP2K1 | Q02750 | 2 | EBI-1765160,EBI-492564 | |
| PLK1 | P53350 | 3 | EBI-1765160,EBI-476768 |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||||||||||||||||||||||||||||||||||||
Molecule processing | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 4857 | 4857 | Baculoviral IAP repeat-containing protein 6 | PRO_0000122361 | ||||||||||||||||||||||||||||||||||||||||||||||||||
Regions | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Repeat | 284 – 358 | 75 | BIR | |||||||||||||||||||||||||||||||||||||||||||||||||||
| Region | 4576 – 4704 | 129 | Ubiquitin-conjugating | |||||||||||||||||||||||||||||||||||||||||||||||||||
| Compositional bias | 30 – 36 | 7 | Poly-Ala | |||||||||||||||||||||||||||||||||||||||||||||||||||
| Compositional bias | 1660 – 1668 | 9 | Poly-Ala | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sites | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Active site | 4625 | 1 | Glycyl thioester intermediate By similarity | |||||||||||||||||||||||||||||||||||||||||||||||||||
Amino acid modifications | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 473 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 480 | 1 | Phosphoserine Ref.11 Ref.13 Ref.15 | |||||||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 486 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 2953 | 1 | Phosphoserine By similarity | |||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental info | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 1332 | 1 | V → L in AAF75772. Ref.2 | |||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2319 | 1 | L → F in BAA86603. Ref.3 | |||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence conflict | 2674 | 1 | T → S in AAF75772. Ref.2 | |||||||||||||||||||||||||||||||||||||||||||||||||||
Secondary structure | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 4524 – 4533 | 10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 4536 – 4540 | 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 4543 – 4545 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 4551 – 4555 | 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 4560 – 4564 | 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 4572 – 4588 | 17 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 4597 – 4604 | 8 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 4608 – 4615 | 8 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 4625 – 4631 | 7 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 4634 – 4638 | 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 4642 – 4645 | 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 4649 – 4652 | 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 4668 – 4670 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 4677 – 4679 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 4683 – 4685 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 4688 – 4698 | 11 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 4704 – 4707 | 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 4711 – 4714 | 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 4718 – 4738 | 21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 4741 – 4745 | 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 4749 – 4751 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 4752 – 4777 | 26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 4788 – 4810 | 23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Generation and annotation of the DNA sequences of human chromosomes 2 and 4." Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., Du H. Wilson R.K.Nature 434:724-731(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [2] | "A human IAP-family gene, apollon, expressed in human brain cancer cells." Chen Z., Naito M., Hori S., Mashima T., Yamori T., Tsuruo T. Biochem. Biophys. Res. Commun. 264:847-854(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 29-4857. Tissue: Brain. |
| [3] | "Prediction of the coding sequences of unidentified human genes. XV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro." Nagase T., Ishikawa K., Kikuno R., Hirosawa M., Nomura N., Ohara O. DNA Res. 6:337-345(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2063-4857. Tissue: Brain. |
| [4] | "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones." Nakajima D., Okazaki N., Yamakawa H., Kikuno R., Ohara O., Nagase T. DNA Res. 9:99-106(2002) [PubMed] [Europe PMC] [Abstract] Cited for: SEQUENCE REVISION. |
| [5] | "Nrdp1-mediated degradation of the gigantic IAP, BRUCE, is a novel pathway for triggering apoptosis." Qiu X.B., Markant S.L., Yuan J., Goldberg A.L. EMBO J. 23:800-810(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH RNF41, UBIQUITINATION, FUNCTION. |
| [6] | "Dual role of BRUCE as an antiapoptotic IAP and a chimeric E2/E3 ubiquitin ligase." Bartke T., Pohl C., Pyrowolakis G., Jentsch S. Mol. Cell 14:801-811(2004) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBUNIT, ENZYME REGULATION, DOMAIN BIR, INTERACTION WITH HTRA2; CASP3; CASP6; CASP7; CASP9 AND DIABLO/SMAC. |
| [7] | "An Apollon vista of death and destruction." Martin S.J. Nat. Cell Biol. 6:804-806(2004) [PubMed] [Europe PMC] [Abstract] Cited for: REVIEW ON FUNCTION. |
| [8] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [9] | "Final stages of cytokinesis and midbody ring formation are controlled by BRUCE." Pohl C., Jentsch S. Cell 132:832-845(2008) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION, PHOSPHORYLATION, UBIQUITINATION, DEUBIQUITINATION, INTERACTION WITH KIF23/MKLP1; USP8/UBPY; BIRC5/SURVIVIN; MAP2K1/MEK1; RAB8A/RAB8; RAB11A/RAB11; PLK1; EXOC3/SEC6 AND EXOC4/SEC8. |
| [10] | "IAPs: more than just inhibitors of apoptosis proteins." Dubrez-Daloz L., Dupoux A., Cartier J. Cell Cycle 7:1036-1046(2008) [PubMed] [Europe PMC] [Abstract] Cited for: REVIEW ON FUNCTION. |
| [11] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-480, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "Large-scale proteomics analysis of the human kinome." Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H. Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [13] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-480, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [14] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [15] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-480, MASS SPECTROMETRY. |
| [16] | "Ubc domain of the ubiquitin-protein ligase baculoviral IAP repeat-containing protein 6." Structural genomics consortium (SGC) Submitted (APR-2008) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.01 ANGSTROMS) OF 4498-4820. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AC079837 Genomic DNA. No translation available. AL133243 Genomic DNA. No translation available. AL133245 Genomic DNA. No translation available. AL133246 Genomic DNA. No translation available. AF265555 mRNA. Translation: AAF75772.1. AB033115 mRNA. Translation: BAA86603.2. Frameshift. | ||||||||||||
| IPI | IPI00939720. | ||||||||||||
| RefSeq | NP_057336.3. NM_016252.3. | ||||||||||||
| UniGene | Hs.150107. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | Q9NR09. | ||||||||||||
| SMR | Q9NR09. Positions 4521-4818. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | Q9NR09. 13 interactions. | ||||||||||||
| STRING | 9606.ENSP00000393596. | ||||||||||||
Protein family/group databases | |||||||||||||
| MEROPS | I32.006. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q9NR09. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 12585192. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | Q9NR09. | ||||||||||||
| PRIDE | Q9NR09. | ||||||||||||
Protocols and materials databases | |||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000421745; ENSP00000393596; ENSG00000115760. | ||||||||||||
| GeneID | 57448. | ||||||||||||
| KEGG | hsa:57448. | ||||||||||||
| UCSC | uc010ezu.3. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 57448. | ||||||||||||
| GeneCards | GC02P032582. | ||||||||||||
| H-InvDB | HIX0001957. HIX0030282. | ||||||||||||
| HGNC | HGNC:13516. BIRC6. | ||||||||||||
| MIM | 605638. gene. | ||||||||||||
| neXtProt | NX_Q9NR09. | ||||||||||||
| PharmGKB | PA25363. | ||||||||||||
| HUGE | Search... | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | COG5078. | ||||||||||||
| HOGENOM | HOG000168828. | ||||||||||||
| HOVERGEN | HBG050691. | ||||||||||||
| InParanoid | Q9NR09. | ||||||||||||
| KO | K10586. | ||||||||||||
| OMA | FLIHVKA. | ||||||||||||
| OrthoDB | EOG4DJJVH. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | Q9NR09. | ||||||||||||
| Bgee | Q9NR09. | ||||||||||||
| CleanEx | HS_BIRC6. | ||||||||||||
| Genevestigator | Q9NR09. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 1.10.1170.10. 1 hit. 2.130.10.10. 4 hits. 3.10.110.10. 1 hit. | ||||||||||||
| InterPro | IPR001370. BIR. IPR022103. DUF3643. IPR000608. UBQ-conjugat_E2. IPR016135. UBQ-conjugating_enzyme/RWD. IPR015943. WD40/YVTN_repeat-like_dom. [Graphical view] | ||||||||||||
| Pfam | PF00653. BIR. 1 hit. PF12356. DUF3643. 1 hit. PF00179. UQ_con. 1 hit. [Graphical view] | ||||||||||||
| SMART | SM00238. BIR. 1 hit. [Graphical view] | ||||||||||||
| SUPFAM | SSF54495. UBQ-conjugat/RWD-like. 1 hit. | ||||||||||||
| PROSITE | PS01282. BIR_REPEAT_1. False negative. PS50143. BIR_REPEAT_2. 1 hit. PS00183. UBIQUITIN_CONJUGAT_1. False negative. PS50127. UBIQUITIN_CONJUGAT_2. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| ChiTaRS | BIRC6. human. | ||||||||||||
| EvolutionaryTrace | Q9NR09. | ||||||||||||
| GenomeRNAi | 57448. | ||||||||||||
| NextBio | 63594. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | BIRC6_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9NR09 Secondary accession number(s): Q9ULD1 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 2 Human chromosome 2: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
