Q9NQW1 (SC31B_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 92.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Protein transport protein Sec31B Alternative name(s): SEC31-like protein 2 SEC31-related protein B SEC31B-1 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1179 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | As a component of the coat protein complex II (COPII), may function in vesicle budding and cargo export from the endoplasmic reticulum. Ref.1 |
| Subunit structure | COPII is composed of at least 5 proteins: the SEC23/24 complex, the SEC13/31 complex and SAR1. SEC13 and SEC31 make a 2:2 tetramer that forms the edge element of the COPII outer coat. The tetramer self-assembles in multiple copies to form the complete polyhedral cage. Interacts (via WD 8) with SEC13 By similarity. Interacts with SEC31A. Ref.1 |
| Subcellular location | Cytoplasm. Cytoplasmic vesicle › COPII-coated vesicle membrane; Peripheral membrane protein; Cytoplasmic side. Endoplasmic reticulum membrane; Peripheral membrane protein Ref.1. |
| Tissue specificity | Ubiquitously expressed at low levels with specific expression in thymus and testis. Expressed in testis by Sertoli cells, Leydig cells and spermatogonia and in cerebellum more prominently by Purkinje and granular cells (at protein level). Ref.1 Ref.5 |
| Post-translational modification | Monoubiquitinated by the BCR(KLHL12) E3 ubiquitin ligase complex, leading to regulate the size of COPII coats. |
| Sequence similarities | Belongs to the WD repeat SEC31 family. Contains 8 WD repeats. |
Ontologies
| Keywords | |
|---|---|
| Biological process | ER-Golgi transport Protein transport Transport |
| Cellular component | Cytoplasm Cytoplasmic vesicle Endoplasmic reticulum Membrane |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Repeat WD repeat |
| PTM | Phosphoprotein Ubl conjugation |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | protein transport Inferred from electronic annotation. Source: UniProtKB-KW vesicle-mediated transportInferred from electronic annotation. Source: UniProtKB-KW |
| Cellular_component | ER to Golgi transport vesicle membrane Inferred from electronic annotation. Source: UniProtKB-SubCell endoplasmic reticulum membraneInferred from electronic annotation. Source: UniProtKB-SubCell endoplasmic reticulum partInferred from direct assay PubMed 22792322. Source: MGI |
| Complete GO annotation... | |
Alternative products
| This entry describes 5 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9NQW1-1) Also known as: SEC31B-F; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9NQW1-2) The sequence of this isoform differs from the canonical sequence as follows: 165-165: Missing. 349-349: I → V 350-1179: Missing. | ||||||
| Note: May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay. | ||||||
| Isoform 3 (identifier: Q9NQW1-3) The sequence of this isoform differs from the canonical sequence as follows: 69-85: FHKLVWGSFGSGLLESS → ATSWLQGPAILKSSLGI 86-1179: Missing. | ||||||
| Isoform 4 (identifier: Q9NQW1-4) Also known as: SEC31B-t; The sequence of this isoform differs from the canonical sequence as follows: 470-482: KVTLEQDSRMKFL → KPARDSSGARR 483-1179: Missing. | ||||||
| Isoform 5 (identifier: Q9NQW1-5) The sequence of this isoform differs from the canonical sequence as follows: 165-165: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1179 | 1179 | Protein transport protein Sec31B | PRO_0000295153 | |||||
Regions | |||||||||
| Repeat | 17 – 56 | 40 | WD 1 | ||||||
| Repeat | 67 – 110 | 44 | WD 2 | ||||||
| Repeat | 119 – 159 | 41 | WD 3 | ||||||
| Repeat | 166 – 206 | 41 | WD 4 | ||||||
| Repeat | 209 – 254 | 46 | WD 5 | ||||||
| Repeat | 258 – 298 | 41 | WD 6 | ||||||
| Repeat | 301 – 341 | 41 | WD 7 | ||||||
| Repeat | 391 – 422 | 32 | WD 8; interaction with SEC13 By similarity | ||||||
| Compositional bias | 821 – 1073 | 253 | Pro-rich | ||||||
Amino acid modifications | |||||||||
| Modified residue | 679 | 1 | Phosphothreonine By similarity | ||||||
| Modified residue | 680 | 1 | Phosphoserine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 69 – 85 | 17 | FHKLV…LLESS → ATSWLQGPAILKSSLGI in isoform 3. | VSP_026757 | |||||
| Alternative sequence | 86 – 1179 | 1094 | Missing in isoform 3. | VSP_026758 | |||||
| Alternative sequence | 165 | 1 | Missing in isoform 2 and isoform 5. | VSP_026759 | |||||
| Alternative sequence | 349 | 1 | I → V in isoform 2. | VSP_026760 | |||||
| Alternative sequence | 350 – 1179 | 830 | Missing in isoform 2. | VSP_026761 | |||||
| Alternative sequence | 470 – 482 | 13 | KVTLE…RMKFL → KPARDSSGARR in isoform 4. | VSP_026762 | |||||
| Alternative sequence | 483 – 1179 | 697 | Missing in isoform 4. | VSP_026763 | |||||
| Natural variant | 89 | 1 | V → A. Ref.4 Corresponds to variant rs3763695 [ dbSNP | Ensembl ]. | VAR_033228 | |||||
| Natural variant | 100 | 1 | Y → C. Corresponds to variant rs7074707 [ dbSNP | Ensembl ]. | VAR_033229 | |||||
| Natural variant | 129 | 1 | L → F. Ref.4 Corresponds to variant rs3793706 [ dbSNP | Ensembl ]. | VAR_033230 | |||||
| Natural variant | 332 | 1 | S → A. Ref.4 Corresponds to variant rs2295774 [ dbSNP | Ensembl ]. | VAR_033231 | |||||
| Natural variant | 372 | 1 | P → S. Corresponds to variant rs2295772 [ dbSNP | Ensembl ]. | VAR_033232 | |||||
| Natural variant | 433 | 1 | R → Q. Corresponds to variant rs2295771 [ dbSNP | Ensembl ]. | VAR_053415 | |||||
| Natural variant | 478 | 1 | R → T. Corresponds to variant rs11819496 [ dbSNP | Ensembl ]. | VAR_053416 | |||||
| Natural variant | 527 | 1 | S → R. Corresponds to variant rs17113157 [ dbSNP | Ensembl ]. | VAR_033233 | |||||
| Natural variant | 1169 | 1 | A → S. Corresponds to variant rs2298075 [ dbSNP | Ensembl ]. | VAR_033234 | |||||
Experimental info | |||||||||
| Sequence conflict | 805 | 1 | A → V in CAB45735. Ref.2 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Human Sec31B: a family of new mammalian orthologues of yeast Sec31p that associate with the COPII coat." Stankewich M.C., Stabach P.R., Morrow J.S. J. Cell Sci. 119:958-969(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), ALTERNATIVE SPLICING (ISOFORM 4), FUNCTION, TISSUE SPECIFICITY, SUBCELLULAR LOCATION, INTERACTION WITH SEC13 AND SEC31A. Tissue: Testis. |
| [2] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 265-1179 (ISOFORM 1). Tissue: Testis. |
| [3] | "The DNA sequence and comparative analysis of human chromosome 10." Deloukas P., Earthrowl M.E., Grafham D.V., Rubenfield M., French L., Steward C.A., Sims S.K., Jones M.C., Searle S., Scott C., Howe K., Hunt S.E., Andrews T.D., Gilbert J.G.R., Swarbreck D., Ashurst J.L., Taylor A., Battles J. Rogers J.Nature 429:375-381(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 5), VARIANTS ALA-89; PHE-129 AND ALA-332. Tissue: Testis. |
| [5] | "Mammalian homologues of yeast sec31p. An ubiquitously expressed form is localized to endoplasmic reticulum (ER) exit sites and is essential for ER-Golgi transport." Tang B.L., Zhang T., Low D.Y.H., Wong E.T., Horstmann H., Hong W. J. Biol. Chem. 275:13597-13604(2000) [PubMed] [Europe PMC] [Abstract] Cited for: TISSUE SPECIFICITY. |
| [6] | "Ubiquitin-dependent regulation of COPII coat size and function." Jin L., Pahuja K.B., Wickliffe K.E., Gorur A., Baumgartel C., Schekman R., Rape M. Nature 482:495-500(2012) [PubMed] [Europe PMC] [Abstract] Cited for: UBIQUITINATION. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF274863 mRNA. Translation: AAF78243.1. AL080141 mRNA. Translation: CAB45735.1. BX640914 mRNA. Translation: CAE45955.1. AL133352 Genomic DNA. Translation: CAH73561.1. BC034946 mRNA. Translation: AAH34946.1. BC044569 mRNA. No translation available. BC144313 mRNA. Translation: AAI44314.1. |
| IPI | IPI00023442. IPI00426029. IPI00853086. IPI00923389. IPI00954279. |
| PIR | T12526. |
| RefSeq | NP_056305.1. NM_015490.3. |
| UniGene | Hs.18889. |
3D structure databases | |
| ProteinModelPortal | Q9NQW1. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9NQW1. 1 interaction. |
| STRING | 9606.ENSP00000359370. |
PTM databases | |
| PhosphoSite | Q9NQW1. |
Polymorphism databases | |
| DMDM | 74762753. |
Proteomic databases | |
| PaxDb | Q9NQW1. |
| PRIDE | Q9NQW1. |
Protocols and materials databases | |
| DNASU | 25956. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000370345; ENSP00000359370; ENSG00000075826. ENST00000451524; ENSP00000391178; ENSG00000075826. |
| GeneID | 25956. |
| KEGG | hsa:25956. |
| UCSC | uc001krc.1. human. uc010qpo.1. human. |
Organism-specific databases | |
| CTD | 25956. |
| GeneCards | GC10M102237. |
| HGNC | HGNC:23197. SEC31B. |
| HPA | HPA035882. HPA040819. |
| MIM | 610258. gene. |
| neXtProt | NX_Q9NQW1. |
| PharmGKB | PA162402792. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG248389. |
| HOGENOM | HOG000230582. |
| HOVERGEN | HBG055626. |
| InParanoid | Q9NQW1. |
| KO | K14005. |
| OMA | RLECLYE. |
| OrthoDB | EOG470TGM. |
| PhylomeDB | Q9NQW1. |
Enzyme and pathway databases | |
| SignaLink | Q9NQW1. |
Gene expression databases | |
| ArrayExpress | Q9NQW1. |
| Bgee | Q9NQW1. |
| CleanEx | HS_SEC31B. |
| Genevestigator | Q9NQW1. |
Family and domain databases | |
| Gene3D | 2.130.10.10. 1 hit. |
| InterPro | IPR015943. WD40/YVTN_repeat-like_dom. IPR001680. WD40_repeat. IPR019775. WD40_repeat_CS. IPR017986. WD40_repeat_dom. [Graphical view] |
| Pfam | PF00400. WD40. 2 hits. [Graphical view] |
| SMART | SM00320. WD40. 5 hits. [Graphical view] |
| SUPFAM | SSF50978. WD40_like. 1 hit. |
| PROSITE | PS00678. WD_REPEATS_1. 1 hit. PS50082. WD_REPEATS_2. 1 hit. PS50294. WD_REPEATS_REGION. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | SEC31B. human. |
| GenomeRNAi | 25956. |
| NextBio | 47564. |
| SOURCE | Search... |
Entry information
| Entry name | SC31B_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9NQW1 Secondary accession number(s): B7ZM75 Q9Y4Q8 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 10 Human chromosome 10: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
