ID AT132_HUMAN Reviewed; 1180 AA. AC Q9NQ11; O75700; Q5JXY1; Q5JXY2; Q6S9Z9; DT 01-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-JUN-2001, sequence version 2. DT 27-MAR-2024, entry version 202. DE RecName: Full=Polyamine-transporting ATPase 13A2 {ECO:0000305|PubMed:31996848}; DE EC=7.6.2.- {ECO:0000269|PubMed:31996848}; GN Name=ATP13A2 {ECO:0000312|HGNC:HGNC:30213}; GN Synonyms=PARK9 {ECO:0000303|PubMed:21542062}; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM A). RA Rhodes S., Huckle E.; RL Submitted (APR-2000) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3). RA Liu J.-P., Li H.; RT "Homo sapiens putative ATPase (N-ATPase) mRNA."; RL Submitted (NOV-2003) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). RC TISSUE=Thalamus; RX PubMed=14702039; DOI=10.1038/ng1285; RA Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., RA Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., RA Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S., RA Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., RA Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., RA Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., RA Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., RA Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., RA Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., RA Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., RA Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., RA Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., RA Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., RA Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., RA Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., RA Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., RA Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., RA Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., RA Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., RA Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., RA Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., RA Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., RA Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., RA Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., RA Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., RA Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., RA Isogai T., Sugano S.; RT "Complete sequencing and characterization of 21,243 full-length human RT cDNAs."; RL Nat. Genet. 36:40-45(2004). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=16710414; DOI=10.1038/nature04727; RA Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., RA Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., RA Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K., RA Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., RA Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., RA Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., RA Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., RA Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., RA Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., RA Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., RA Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., RA Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., RA Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., RA Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., RA Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., RA Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., RA Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., RA Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., RA Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., RA McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., RA Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., RA Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., RA Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., RA Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., RA Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., RA White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., RA Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., RA Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., RA Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.; RT "The DNA sequence and biological annotation of human chromosome 1."; RL Nature 441:315-321(2006). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RA Mural R.J., Istrail S., Sutton G., Florea L., Halpern A.L., Mobarry C.M., RA Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., RA Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., RA Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., RA Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., RA Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., RA Hunkapiller M.W., Myers E.W., Venter J.C.; RL Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases. RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM B). RC TISSUE=Brain, and Fetus; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [7] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 705-1180 (ISOFORM A). RC TISSUE=Amygdala; RX PubMed=17974005; DOI=10.1186/1471-2164-8-399; RA Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., RA Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., RA Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., RA Wiemann S., Schupp I.; RT "The full-ORF clone resource of the German cDNA consortium."; RL BMC Genomics 8:399-399(2007). RN [8] RP NUCLEOTIDE SEQUENCE [MRNA] OF 855-1180 (ISOFORM B). RA Casciano I., Volpi E.V., De Ambrosis A., Marchi J.M., Romani M.; RT "YAC analysis and genes identification at a site of viral integration in RT the 1p36.1-36.2 chromosomal site."; RL Submitted (JUL-1998) to the EMBL/GenBank/DDBJ databases. RN [9] RP FUNCTION, TISSUE SPECIFICITY, AND SUBCELLULAR LOCATION. RX PubMed=22186024; DOI=10.1093/hmg/ddr606; RA Ramonet D., Podhajska A., Stafa K., Sonnay S., Trancikova A., Tsika E., RA Pletnikova O., Troncoso J.C., Glauser L., Moore D.J.; RT "PARK9-associated ATP13A2 localizes to intracellular acidic vesicles and RT regulates cation homeostasis and neuronal integrity."; RL Hum. Mol. Genet. 21:1725-1743(2012). RN [10] RP INVOLVEMENT IN KRS. RX PubMed=16964263; DOI=10.1038/ng1884; RA Ramirez A., Heimbach A., Gruendemann J., Stiller B., Hampshire D., RA Cid L.P., Goebel I., Mubaidin A.F., Wriekat A.-L., Roeper J., Al-Din A., RA Hillmer A.M., Karsak M., Liss B., Woods C.G., Behrens M.I., Kubisch C.; RT "Hereditary parkinsonism with dementia is caused by mutations in ATP13A2, RT encoding a lysosomal type 5 P-type ATPase."; RL Nat. Genet. 38:1184-1191(2006). RN [11] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-151, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Erythroleukemia; RX PubMed=23186163; DOI=10.1021/pr300630k; RA Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., RA Mohammed S.; RT "Toward a comprehensive characterization of a human cancer cell RT phosphoproteome."; RL J. Proteome Res. 12:260-271(2013). RN [12] RP FUNCTION, AND SUBCELLULAR LOCATION. RX PubMed=24603074; DOI=10.1093/hmg/ddu099; RA Kong S.M., Chan B.K., Park J.S., Hill K.J., Aitken J.B., Cottle L., RA Farghaian H., Cole A.R., Lay P.A., Sue C.M., Cooper A.A.; RT "Parkinson's disease-linked human PARK9/ATP13A2 maintains zinc homeostasis RT and promotes alpha-Synuclein externalization via exosomes."; RL Hum. Mol. Genet. 23:2816-2833(2014). RN [13] RP FUNCTION, AND SUBCELLULAR LOCATION. RX PubMed=25392495; DOI=10.1523/jneurosci.1629-14.2014; RA Tsunemi T., Hamada K., Krainc D.; RT "ATP13A2/PARK9 regulates secretion of exosomes and alpha-synuclein."; RL J. Neurosci. 34:15281-15287(2014). RN [14] RP FUNCTION, ACTIVITY REGULATION, SUBCELLULAR LOCATION, DOMAIN, TOPOLOGY, RP AUTOPHOSPHORYLATION, ACTIVE SITE, GLYCOSYLATION AT ASN-1033, AND RP MUTAGENESIS OF GLY-59; 66-ARG--LYS-68; 74-ARG--ARG-78; 160-LYS--ARG-164 AND RP ASN-1033. RX PubMed=26134396; DOI=10.1073/pnas.1508220112; RA Holemans T., Soerensen D.M., van Veen S., Martin S., Hermans D., RA Kemmer G.C., Van den Haute C., Baekelandt V., Guenther Pomorski T., RA Agostinis P., Wuytack F., Palmgren M., Eggermont J., Vangheluwe P.; RT "A lipid switch unlocks Parkinson's disease-associated ATP13A2."; RL Proc. Natl. Acad. Sci. U.S.A. 112:9040-9045(2015). RN [15] RP FUNCTION. RX PubMed=31132336; DOI=10.1016/j.bbamem.2019.05.015; RA Marcos A.L., Corradi G.R., Mazzitelli L.R., Casali C.I., RA Fernandez Tome M.D.C., Adamo H.P., de Tezanos Pinto F.; RT "The Parkinson-associated human P5B-ATPase ATP13A2 modifies lipid RT homeostasis."; RL Biochim. Biophys. Acta 1861:182993-182993(2019). RN [16] RP FUNCTION, INTERACTION WITH HDAC6, AND CHARACTERIZATION OF VARIANTS KRS RP LEU-182 AND ARG-504. RX PubMed=30538141; DOI=10.1083/jcb.201804165; RA Wang R., Tan J., Chen T., Han H., Tian R., Tan Y., Wu Y., Cui J., Chen F., RA Li J., Lv L., Guan X., Shang S., Lu J., Zhang Z.; RT "ATP13A2 facilitates HDAC6 recruitment to lysosome to promote RT autophagosome-lysosome fusion."; RL J. Cell Biol. 218:267-284(2019). RN [17] RP FUNCTION, CATALYTIC ACTIVITY, ACTIVITY REGULATION, BIOPHYSICOCHEMICAL RP PROPERTIES, CHARACTERIZATION OF VARIANTS KRS MET-12; ARG-533; THR-746 AND RP ARG-877, CHARACTERIZATION OF VARIANT SPG8 ILE-517, AND MUTAGENESIS OF RP GLU-348; ALA-472; ASP-513; ASP-967 AND LYS-1067. RX PubMed=31996848; DOI=10.1038/s41586-020-1968-7; RA van Veen S., Martin S., Van den Haute C., Benoy V., Lyons J., Vanhoutte R., RA Kahler J.P., Decuypere J.P., Gelders G., Lambie E., Zielich J., RA Swinnen J.V., Annaert W., Agostinis P., Ghesquiere B., Verhelst S., RA Baekelandt V., Eggermont J., Vangheluwe P.; RT "ATP13A2 deficiency disrupts lysosomal polyamine export."; RL Nature 578:419-424(2020). RN [18] RP VARIANT KRS ARG-504, AND VARIANTS MET-12 AND ARG-533. RX PubMed=17485642; DOI=10.1212/01.wnl.0000260963.08711.08; RA Di Fonzo A., Chien H.F., Socal M., Giraudo S., Tassorelli C., Iliceto G., RA Fabbrini G., Marconi R., Fincati E., Abbruzzese G., Marini P., RA Squitieri F., Horstink M.W., Montagna P., Libera A.D., Stocchi F., RA Goldwurm S., Ferreira J.J., Meco G., Martignoni E., Lopiano L., RA Jardim L.B., Oostra B.A., Barbosa E.R., Bonifati V.; RT "ATP13A2 missense mutations in juvenile parkinsonism and young onset RT Parkinson disease."; RL Neurology 68:1557-1562(2007). RN [19] RP VARIANT KRS LEU-182. RX PubMed=18413573; DOI=10.1212/01.wnl.0000310427.72236.68; RA Ning Y.P., Kanai K., Tomiyama H., Li Y., Funayama M., Yoshino H., Sato S., RA Asahina M., Kuwabara S., Takeda A., Hattori T., Mizuno Y., Hattori N.; RT "PARK9-linked parkinsonism in eastern Asia: mutation detection in ATP13A2 RT and clinical phenotype."; RL Neurology 70:1491-1493(2008). RN [20] RP VARIANT THR-746. RX PubMed=19015489; DOI=10.1212/01.wnl.0000335167.72412.68; RA Lin C.H., Tan E.K., Chen M.L., Tan L.C., Lim H.Q., Chen G.S., Wu R.M.; RT "Novel ATP13A2 variant associated with Parkinson disease in Taiwan and RT Singapore."; RL Neurology 71:1727-1732(2008). RN [21] RP VARIANTS SER-49; GLN-294; LEU-389; GLY-578; TRP-762; ILE-776 AND PHE-946. RX PubMed=19085912; DOI=10.1002/humu.20877; RA Vilarino-Guell C., Soto A.I., Lincoln S.J., Ben Yahmed S., Kefi M., RA Heckman M.G., Hulihan M.M., Chai H., Diehl N.N., Amouri R., Rajput A., RA Mash D.C., Dickson D.W., Middleton L.T., Gibson R.A., Hentati F., RA Farrer M.J.; RT "ATP13A2 variability in Parkinson disease."; RL Hum. Mutat. 30:406-410(2009). RN [22] RP INVOLVEMENT IN KRS. RX PubMed=20683840; DOI=10.1002/mds.22996; RA Behrens M.I., Bruggemann N., Chana P., Venegas P., Kagi M., Parrao T., RA Orellana P., Garrido C., Rojas C.V., Hauke J., Hahnen E., Gonzalez R., RA Seleme N., Fernandez V., Schmidt A., Binkofski F., Kompf D., Kubisch C., RA Hagenah J., Klein C., Ramirez A.; RT "Clinical spectrum of Kufor-Rakeb syndrome in the Chilean kindred with RT ATP13A2 mutations."; RL Mov. Disord. 25:1929-1937(2010). RN [23] RP VARIANT KRS ARG-1059, SUBCELLULAR LOCATION, AND CHARACTERIZATION OF VARIANT RP KRS ARG-1059. RX PubMed=21542062; DOI=10.1002/humu.21527; RA Park J.S., Mehta P., Cooper A.A., Veivers D., Heimbach A., Stiller B., RA Kubisch C., Fung V.S., Krainc D., Mackay-Sim A., Sue C.M.; RT "Pathogenic effects of novel mutations in the P-type ATPase ATP13A2 (PARK9) RT causing Kufor-Rakeb syndrome, a form of early-onset parkinsonism."; RL Hum. Mutat. 32:956-964(2011). RN [24] RP VARIANT KRS ARG-877. RX PubMed=20853184; DOI=10.1007/s10048-010-0259-0; RA Santoro L., Breedveld G.J., Manganelli F., Iodice R., Pisciotta C., RA Nolano M., Punzo F., Quarantelli M., Pappata S., Di Fonzo A., Oostra B.A., RA Bonifati V.; RT "Novel ATP13A2 (PARK9) homozygous mutation in a family with marked RT phenotype variability."; RL Neurogenetics 12:33-39(2011). RN [25] RP VARIANT KRS ARG-854. RX PubMed=22388936; DOI=10.1093/hmg/dds089; RA Bras J., Verloes A., Schneider S.A., Mole S.E., Guerreiro R.J.; RT "Mutation of the parkinsonism gene ATP13A2 causes neuronal ceroid- RT lipofuscinosis."; RL Hum. Mol. Genet. 21:2646-2650(2012). RN [26] RP VARIANT KRS VAL-522, AND FUNCTION. RX PubMed=22296644; DOI=10.1016/j.neurobiolaging.2011.12.035; RA Gruenewald A., Arns B., Seibler P., Rakovic A., Muenchau A., Ramirez A., RA Sue C.M., Klein C.; RT "ATP13A2 mutations impair mitochondrial function in fibroblasts from RT patients with Kufor-Rakeb syndrome."; RL Neurobiol. Aging 33:1843.E1-1843.E7(2012). RN [27] RP FUNCTION, CHARACTERIZATION OF VARIANTS KRS MET-12; LEU-182; ARG-504; RP ARG-533; THR-746 AND ARG-877, AND SUBCELLULAR LOCATION. RX PubMed=22768177; DOI=10.1371/journal.pone.0039942; RA Podhajska A., Musso A., Trancikova A., Stafa K., Moser R., Sonnay S., RA Glauser L., Moore D.J.; RT "Common pathogenic effects of missense mutations in the P-type ATPase RT ATP13A2 (PARK9) associated with early-onset parkinsonism."; RL PLoS ONE 7:E39942-E39942(2012). RN [28] RP FUNCTION, AND INTERACTION WITH MYCBP2. RX PubMed=27278822; DOI=10.1038/ncomms11803; RA Bento C.F., Ashkenazi A., Jimenez-Sanchez M., Rubinsztein D.C.; RT "The Parkinson's disease-associated genes ATP13A2 and SYT11 regulate RT autophagy via a common pathway."; RL Nat. Commun. 7:11803-11803(2016). RN [29] RP INVOLVEMENT IN SPG78. RX PubMed=27217339; DOI=10.1093/brain/aww111; RA Kara E., Tucci A., Manzoni C., Lynch D.S., Elpidorou M., Bettencourt C., RA Chelban V., Manole A., Hamed S.A., Haridy N.A., Federoff M., Preza E., RA Hughes D., Pittman A., Jaunmuktane Z., Brandner S., Xiromerisiou G., RA Wiethoff S., Schottlaender L., Proukakis C., Morris H., Warner T., RA Bhatia K.P., Korlipara L.V., Singleton A.B., Hardy J., Wood N.W., RA Lewis P.A., Houlden H.; RT "Genetic and phenotypic characterization of complex hereditary spastic RT paraplegia."; RL Brain 139:1904-1918(2016). RN [30] RP INVOLVEMENT IN SPG78, VARIANT SPG78 ILE-517, CHARACTERIZATION OF VARIANT RP KRS LEU-182, CHARACTERIZATION OF VARIANT SPG78 ILE-517, CHARACTERIZATION OF RP VARIANT ARG-533, SUBCELLULAR LOCATION, AUTOPHOSPHORYLATION, AND MUTAGENESIS RP OF ASP-513. RX PubMed=28137957; DOI=10.1093/brain/aww307; RA Estrada-Cuzcano A., Martin S., Chamova T., Synofzik M., Timmann D., RA Holemans T., Andreeva A., Reichbauer J., De Rycke R., Chang D.I., RA van Veen S., Samuel J., Schoels L., Poeppel T., Mollerup Soerensen D., RA Asselbergh B., Klein C., Zuchner S., Jordanova A., Vangheluwe P., RA Tournev I., Schuele R.; RT "Loss-of-function mutations in the ATP13A2/PARK9 gene cause complicated RT hereditary spastic paraplegia (SPG78)."; RL Brain 140:287-305(2017). RN [31] RP VARIANTS KRS PHE-441 AND THR-1069. RX PubMed=29903538; DOI=10.1016/j.braindev.2018.05.017; RA Suleiman J., Hamwi N., El-Hattab A.W.; RT "ATP13A2 novel mutations causing a rare form of juvenile-onset Parkinson RT disease."; RL Brain Dev. 40:824-826(2018). CC -!- FUNCTION: ATPase which acts as a lysosomal polyamine exporter with high CC affinity for spermine (PubMed:31996848). Also stimulates cellular CC uptake of polyamines and protects against polyamine toxicity CC (PubMed:31996848). Plays a role in intracellular cation homeostasis and CC the maintenance of neuronal integrity (PubMed:22186024). Contributes to CC cellular zinc homeostasis (PubMed:24603074). Confers cellular CC protection against Mn(2+) and Zn(2+) toxicity and mitochondrial stress CC (PubMed:26134396). Required for proper lysosomal and mitochondrial CC maintenance (PubMed:22296644, PubMed:28137957). Regulates the CC autophagy-lysosome pathway through the control of SYT11 expression at CC both transcriptional and post-translational levels (PubMed:27278822). CC Facilitates recruitment of deacetylase HDAC6 to lysosomes to CC deacetylate CTTN, leading to actin polymerization, promotion of CC autophagosome-lysosome fusion and completion of autophagy CC (PubMed:30538141). Promotes secretion of exosomes as well as secretion CC of SCNA via exosomes (PubMed:25392495, PubMed:24603074). Plays a role CC in lipid homeostasis (PubMed:31132336). {ECO:0000269|PubMed:22186024, CC ECO:0000269|PubMed:22296644, ECO:0000269|PubMed:24603074, CC ECO:0000269|PubMed:25392495, ECO:0000269|PubMed:26134396, CC ECO:0000269|PubMed:27278822, ECO:0000269|PubMed:28137957, CC ECO:0000269|PubMed:30538141, ECO:0000269|PubMed:31132336, CC ECO:0000269|PubMed:31996848}. CC -!- CATALYTIC ACTIVITY: CC Reaction=ATP + H2O + spermidine(out) = ADP + H(+) + phosphate + CC spermidine(in); Xref=Rhea:RHEA:29999, ChEBI:CHEBI:15377, CC ChEBI:CHEBI:15378, ChEBI:CHEBI:30616, ChEBI:CHEBI:43474, CC ChEBI:CHEBI:57834, ChEBI:CHEBI:456216; CC Evidence={ECO:0000269|PubMed:31996848}; CC -!- CATALYTIC ACTIVITY: CC Reaction=ATP + H2O + spermine(out) = ADP + H(+) + phosphate + CC spermine(in); Xref=Rhea:RHEA:63368, ChEBI:CHEBI:15377, CC ChEBI:CHEBI:15378, ChEBI:CHEBI:30616, ChEBI:CHEBI:43474, CC ChEBI:CHEBI:45725, ChEBI:CHEBI:456216; CC Evidence={ECO:0000269|PubMed:31996848}; CC -!- ACTIVITY REGULATION: Accumulates in an inactive autophosphorylated CC state (PubMed:26134396). The presence of spermine results in a dose- CC dependent reduction in autophosphorylation (PubMed:31996848). CC {ECO:0000269|PubMed:26134396, ECO:0000269|PubMed:31996848}. CC -!- BIOPHYSICOCHEMICAL PROPERTIES: CC Kinetic parameters: CC KM=76 uM for spermine {ECO:0000269|PubMed:31996848}; CC Vmax=159 nmol/min/mg enzyme {ECO:0000269|PubMed:31996848}; CC -!- SUBUNIT: Interacts with MYCBP2; the interaction inhibits the CC ubiquitination of TSC2 by MYCBP2 (PubMed:27278822). Interacts with CC HDAC6; the interaction results in recruitment of HDAC6 to lysosomes to CC promote CTTN deacetylation (PubMed:30538141). CC {ECO:0000269|PubMed:27278822, ECO:0000269|PubMed:30538141}. CC -!- INTERACTION: CC Q9NQ11; Q2M2I8: AAK1; NbExp=2; IntAct=EBI-6308763, EBI-1383433; CC Q9NQ11; O60238: BNIP3L; NbExp=2; IntAct=EBI-6308763, EBI-849893; CC Q9NQ11; O14976: GAK; NbExp=2; IntAct=EBI-6308763, EBI-714707; CC Q9NQ11; Q9UBN7: HDAC6; NbExp=2; IntAct=EBI-6308763, EBI-301697; CC Q9NQ11; P11142: HSPA8; NbExp=2; IntAct=EBI-6308763, EBI-351896; CC Q9NQ11; Q9BT88: SYT11; NbExp=2; IntAct=EBI-6308763, EBI-751770; CC Q9NQ11; O95070: YIF1A; NbExp=2; IntAct=EBI-6308763, EBI-2799703; CC -!- SUBCELLULAR LOCATION: Lysosome membrane {ECO:0000269|PubMed:21542062, CC ECO:0000269|PubMed:22186024, ECO:0000269|PubMed:22768177, CC ECO:0000269|PubMed:24603074, ECO:0000269|PubMed:26134396, CC ECO:0000269|PubMed:28137957}; Multi-pass membrane protein CC {ECO:0000255}. Late endosome membrane {ECO:0000269|PubMed:24603074, CC ECO:0000269|PubMed:25392495, ECO:0000269|PubMed:26134396}; Multi-pass CC membrane protein {ECO:0000255}. Endosome, multivesicular body membrane CC {ECO:0000269|PubMed:24603074, ECO:0000269|PubMed:25392495}; Multi-pass CC membrane protein {ECO:0000255}. Cytoplasmic vesicle, autophagosome CC membrane {ECO:0000269|PubMed:24603074}; Multi-pass membrane protein CC {ECO:0000255}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=3; CC Name=A; CC IsoId=Q9NQ11-1; Sequence=Displayed; CC Name=B; CC IsoId=Q9NQ11-2; Sequence=VSP_007310, VSP_007311, VSP_007312; CC Name=3; CC IsoId=Q9NQ11-3; Sequence=VSP_007310; CC -!- TISSUE SPECIFICITY: Expressed in brain; protein levels are markedly CC increased in brain from subjects with Parkinson disease and subjects CC with dementia with Lewy bodies. Detected in pyramidal neurons located CC throughout the cingulate cortex (at protein level). In the substantia CC nigra, it is found in neuromelanin-positive dopaminergic neurons (at CC protein level). {ECO:0000269|PubMed:22186024}. CC -!- DOMAIN: The N-terminal region is required for targeting to late CC endosomes/lysosomes. It does not traverse the membrane but contains a CC membrane-embedded intramembrane domain and interacts with the lipids CC phosphatidic acid (PA) and phosphatidylinositol 3,5-bisphosphate CC (PI(3,5)P2) (PubMed:26134396). PA and PI(3,5)P2 are required for the CC protective effect against mitochondrial stress (PubMed:26134396). CC {ECO:0000269|PubMed:26134396}. CC -!- PTM: Autophosphorylated (PubMed:26134396, PubMed:28137957). Accumulates CC in an inactive autophosphorylated state and autophosphorylation is CC stimulated by phosphatidic acid and phosphatidylinositol 3,5- CC bisphosphate but not by Mn(2+) or Zn(2+) (PubMed:26134396). The CC presence of spermine results in a dose-dependent reduction in CC autophosphorylation (PubMed:31996848). {ECO:0000269|PubMed:26134396, CC ECO:0000269|PubMed:31996848, ECO:0000305|PubMed:28137957}. CC -!- DISEASE: Kufor-Rakeb syndrome (KRS) [MIM:606693]: A rare form of CC autosomal recessive juvenile or early-onset, levodopa-responsive CC parkinsonism. In addition to typical parkinsonian signs, clinical CC manifestations of Kufor-Rakeb syndrome include behavioral problems, CC facial tremor, pyramidal tract dysfunction, supranuclear gaze palsy, CC and dementia. {ECO:0000269|PubMed:16964263, CC ECO:0000269|PubMed:17485642, ECO:0000269|PubMed:18413573, CC ECO:0000269|PubMed:20683840, ECO:0000269|PubMed:20853184, CC ECO:0000269|PubMed:21542062, ECO:0000269|PubMed:22296644, CC ECO:0000269|PubMed:22388936, ECO:0000269|PubMed:22768177, CC ECO:0000269|PubMed:28137957, ECO:0000269|PubMed:29903538, CC ECO:0000269|PubMed:30538141, ECO:0000269|PubMed:31996848}. Note=The CC disease is caused by variants affecting the gene represented in this CC entry. KRS has also been referred to as neuronal ceroid lipofuscinosis CC 12 (CLN12), due to neuronal and glial lipofuscin deposits detected in CC the cortex, basal nuclei and cerebellum of some patients. CC {ECO:0000269|PubMed:22388936}. CC -!- DISEASE: Spastic paraplegia 78, autosomal recessive (SPG78) CC [MIM:617225]: A form of spastic paraplegia, a neurodegenerative CC disorder characterized by a slow, gradual, progressive weakness and CC spasticity of the lower limbs. Rate of progression and the severity of CC symptoms are quite variable. Initial symptoms may include difficulty CC with balance, weakness and stiffness in the legs, muscle spasms, and CC dragging the toes when walking. In some forms of the disorder, bladder CC symptoms (such as incontinence) may appear, or the weakness and CC stiffness may spread to other parts of the body. CC {ECO:0000269|PubMed:27217339, ECO:0000269|PubMed:28137957}. Note=The CC disease is caused by variants affecting the gene represented in this CC entry. CC -!- SIMILARITY: Belongs to the cation transport ATPase (P-type) (TC 3.A.3) CC family. Type V subfamily. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=CAA08912.1; Type=Frameshift; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AL354615; CAB89728.1; -; mRNA. DR EMBL; AY461712; AAR23423.1; -; mRNA. DR EMBL; AK290210; BAF82899.1; -; mRNA. DR EMBL; AL049569; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CH471134; EAW94825.1; -; Genomic_DNA. DR EMBL; CH471134; EAW94827.1; -; Genomic_DNA. DR EMBL; BC030267; AAH30267.1; -; mRNA. DR EMBL; AL833966; CAD38813.2; -; mRNA. DR EMBL; AJ009947; CAA08912.1; ALT_FRAME; mRNA. DR CCDS; CCDS175.1; -. [Q9NQ11-1] DR CCDS; CCDS44072.1; -. [Q9NQ11-2] DR CCDS; CCDS44073.1; -. [Q9NQ11-3] DR RefSeq; NP_001135445.1; NM_001141973.2. [Q9NQ11-3] DR RefSeq; NP_001135446.1; NM_001141974.2. [Q9NQ11-2] DR RefSeq; NP_071372.1; NM_022089.3. [Q9NQ11-1] DR PDB; 7FJM; EM; 3.30 A; A=1-1180. DR PDB; 7FJP; EM; 3.00 A; B=1-1180. DR PDB; 7FJQ; EM; 3.60 A; A=1-1180. DR PDB; 7M5V; EM; 2.90 A; A=1-1180. DR PDB; 7M5X; EM; 2.70 A; A=1-1180. DR PDB; 7M5Y; EM; 3.00 A; A=1-1180. DR PDB; 7N70; EM; 2.80 A; A=1-1180. DR PDB; 7N72; EM; 2.50 A; A=1-1180. DR PDB; 7N73; EM; 2.90 A; A=1-1180. DR PDB; 7N74; EM; 2.80 A; A=1-1180. DR PDB; 7N75; EM; 2.90 A; A=1-1180. DR PDB; 7N76; EM; 2.90 A; A=1-1180. DR PDB; 7N77; EM; 3.20 A; A=1-1180. DR PDB; 7N78; EM; 3.00 A; A=1-1180. DR PDB; 7VPI; EM; 3.50 A; A=1-1180. DR PDB; 7VPJ; EM; 3.50 A; A=1-1180. DR PDB; 7VPK; EM; 3.50 A; A=1-1180. DR PDB; 7VPL; EM; 3.50 A; A=1-1180. DR PDBsum; 7FJM; -. DR PDBsum; 7FJP; -. DR PDBsum; 7FJQ; -. DR PDBsum; 7M5V; -. DR PDBsum; 7M5X; -. DR PDBsum; 7M5Y; -. DR PDBsum; 7N70; -. DR PDBsum; 7N72; -. DR PDBsum; 7N73; -. DR PDBsum; 7N74; -. DR PDBsum; 7N75; -. DR PDBsum; 7N76; -. DR PDBsum; 7N77; -. DR PDBsum; 7N78; -. DR PDBsum; 7VPI; -. DR PDBsum; 7VPJ; -. DR PDBsum; 7VPK; -. DR PDBsum; 7VPL; -. DR AlphaFoldDB; Q9NQ11; -. DR EMDB; EMD-23683; -. DR EMDB; EMD-23684; -. DR EMDB; EMD-23685; -. DR EMDB; EMD-24212; -. DR EMDB; EMD-24213; -. DR EMDB; EMD-24214; -. DR EMDB; EMD-24215; -. DR EMDB; EMD-24216; -. DR EMDB; EMD-24217; -. DR EMDB; EMD-24218; -. DR EMDB; EMD-24219; -. DR EMDB; EMD-24220; -. DR EMDB; EMD-24221; -. DR EMDB; EMD-24222; -. DR EMDB; EMD-24223; -. DR EMDB; EMD-31623; -. DR EMDB; EMD-31626; -. DR EMDB; EMD-31627; -. DR EMDB; EMD-32066; -. DR EMDB; EMD-32067; -. DR EMDB; EMD-32068; -. DR EMDB; EMD-32069; -. DR SMR; Q9NQ11; -. DR BioGRID; 116973; 105. DR IntAct; Q9NQ11; 65. DR MINT; Q9NQ11; -. DR STRING; 9606.ENSP00000327214; -. DR TCDB; 3.A.3.10.7; the p-type atpase (p-atpase) superfamily. DR GlyCosmos; Q9NQ11; 2 sites, No reported glycans. DR GlyGen; Q9NQ11; 3 sites, 1 O-linked glycan (1 site). DR iPTMnet; Q9NQ11; -. DR PhosphoSitePlus; Q9NQ11; -. DR SwissPalm; Q9NQ11; -. DR BioMuta; ATP13A2; -. DR DMDM; 14285364; -. DR EPD; Q9NQ11; -. DR jPOST; Q9NQ11; -. DR MassIVE; Q9NQ11; -. DR MaxQB; Q9NQ11; -. DR PaxDb; 9606-ENSP00000327214; -. DR PeptideAtlas; Q9NQ11; -. DR ProteomicsDB; 63479; -. DR ProteomicsDB; 82052; -. [Q9NQ11-1] DR ProteomicsDB; 82053; -. [Q9NQ11-2] DR ProteomicsDB; 82054; -. [Q9NQ11-3] DR Pumba; Q9NQ11; -. DR Antibodypedia; 29290; 225 antibodies from 24 providers. DR DNASU; 23400; -. DR Ensembl; ENST00000326735.13; ENSP00000327214.8; ENSG00000159363.19. [Q9NQ11-1] DR Ensembl; ENST00000341676.9; ENSP00000341115.5; ENSG00000159363.19. [Q9NQ11-2] DR Ensembl; ENST00000452699.5; ENSP00000413307.1; ENSG00000159363.19. [Q9NQ11-3] DR GeneID; 23400; -. DR KEGG; hsa:23400; -. DR MANE-Select; ENST00000326735.13; ENSP00000327214.8; NM_022089.4; NP_071372.1. DR UCSC; uc001baa.3; human. [Q9NQ11-1] DR AGR; HGNC:30213; -. DR DisGeNET; 23400; -. DR GeneCards; ATP13A2; -. DR HGNC; HGNC:30213; ATP13A2. DR HPA; ENSG00000159363; Tissue enhanced (brain). DR MalaCards; ATP13A2; -. DR MIM; 606693; phenotype. DR MIM; 610513; gene. DR MIM; 617225; phenotype. DR neXtProt; NX_Q9NQ11; -. DR OpenTargets; ENSG00000159363; -. DR Orphanet; 314632; ATP13A2-related juvenile neuronal ceroid lipofuscinosis. DR Orphanet; 513436; Autosomal recessive spastic paraplegia type 78. DR Orphanet; 306674; Kufor-Rakeb syndrome. DR PharmGKB; PA134897221; -. DR VEuPathDB; HostDB:ENSG00000159363; -. DR eggNOG; KOG0208; Eukaryota. DR GeneTree; ENSGT00940000159714; -. DR HOGENOM; CLU_001828_0_0_1; -. DR InParanoid; Q9NQ11; -. DR OMA; SGWKDPL; -. DR OrthoDB; 6047at2759; -. DR PhylomeDB; Q9NQ11; -. DR TreeFam; TF300331; -. DR PathwayCommons; Q9NQ11; -. DR Reactome; R-HSA-936837; Ion transport by P-type ATPases. DR SignaLink; Q9NQ11; -. DR BioGRID-ORCS; 23400; 14 hits in 1156 CRISPR screens. DR ChiTaRS; ATP13A2; human. DR GeneWiki; ATP13A2; -. DR GenomeRNAi; 23400; -. DR Pharos; Q9NQ11; Tbio. DR PRO; PR:Q9NQ11; -. DR Proteomes; UP000005640; Chromosome 1. DR RNAct; Q9NQ11; Protein. DR Bgee; ENSG00000159363; Expressed in right frontal lobe and 166 other cell types or tissues. DR ExpressionAtlas; Q9NQ11; baseline and differential. DR GO; GO:0005776; C:autophagosome; IDA:ParkinsonsUK-UCL. DR GO; GO:0000421; C:autophagosome membrane; IEA:UniProtKB-SubCell. DR GO; GO:0005770; C:late endosome; IDA:ParkinsonsUK-UCL. DR GO; GO:0031902; C:late endosome membrane; IDA:UniProtKB. DR GO; GO:0043202; C:lysosomal lumen; TAS:Reactome. DR GO; GO:0005765; C:lysosomal membrane; IDA:UniProtKB. DR GO; GO:0005764; C:lysosome; IDA:UniProtKB. DR GO; GO:0016020; C:membrane; IBA:GO_Central. DR GO; GO:0005771; C:multivesicular body; IDA:ParkinsonsUK-UCL. DR GO; GO:0032585; C:multivesicular body membrane; NAS:ParkinsonsUK-UCL. DR GO; GO:0043005; C:neuron projection; IDA:ParkinsonsUK-UCL. DR GO; GO:0043025; C:neuronal cell body; IDA:ParkinsonsUK-UCL. DR GO; GO:0030133; C:transport vesicle; IDA:ParkinsonsUK-UCL. DR GO; GO:0031982; C:vesicle; IDA:ParkinsonsUK-UCL. DR GO; GO:0015417; F:ABC-type polyamine transporter activity; IEA:RHEA. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATP hydrolysis activity; NAS:ParkinsonsUK-UCL. DR GO; GO:0019829; F:ATPase-coupled monoatomic cation transmembrane transporter activity; IBA:GO_Central. DR GO; GO:1903135; F:cupric ion binding; ISS:ParkinsonsUK-UCL. DR GO; GO:0030145; F:manganese ion binding; ISS:ParkinsonsUK-UCL. DR GO; GO:0015662; F:P-type ion transporter activity; IEA:InterPro. DR GO; GO:0070300; F:phosphatidic acid binding; IDA:ParkinsonsUK-UCL. DR GO; GO:0080025; F:phosphatidylinositol-3,5-bisphosphate binding; IDA:ParkinsonsUK-UCL. DR GO; GO:0015203; F:polyamine transmembrane transporter activity; IDA:UniProtKB. DR GO; GO:0008270; F:zinc ion binding; ISS:ParkinsonsUK-UCL. DR GO; GO:1905037; P:autophagosome organization; IDA:ParkinsonsUK-UCL. DR GO; GO:0061909; P:autophagosome-lysosome fusion; IMP:UniProtKB. DR GO; GO:0006914; P:autophagy; IMP:UniProtKB. DR GO; GO:0071287; P:cellular response to manganese ion; IMP:ParkinsonsUK-UCL. DR GO; GO:0034599; P:cellular response to oxidative stress; IMP:ParkinsonsUK-UCL. DR GO; GO:0071294; P:cellular response to zinc ion; TAS:ParkinsonsUK-UCL. DR GO; GO:0097734; P:extracellular exosome biogenesis; IMP:ParkinsonsUK-UCL. DR GO; GO:0006874; P:intracellular calcium ion homeostasis; IDA:ParkinsonsUK-UCL. DR GO; GO:0006879; P:intracellular iron ion homeostasis; IMP:ParkinsonsUK-UCL. DR GO; GO:0030003; P:intracellular monoatomic cation homeostasis; TAS:ParkinsonsUK-UCL. DR GO; GO:0006882; P:intracellular zinc ion homeostasis; IMP:ParkinsonsUK-UCL. DR GO; GO:0055088; P:lipid homeostasis; IMP:UniProtKB. DR GO; GO:0007041; P:lysosomal transport; IMP:UniProtKB. DR GO; GO:0034220; P:monoatomic ion transmembrane transport; TAS:Reactome. DR GO; GO:1905166; P:negative regulation of lysosomal protein catabolic process; TAS:ParkinsonsUK-UCL. DR GO; GO:1990938; P:peptidyl-aspartic acid autophosphorylation; IMP:ParkinsonsUK-UCL. DR GO; GO:1902047; P:polyamine transmembrane transport; IDA:ParkinsonsUK-UCL. DR GO; GO:1903543; P:positive regulation of exosomal secretion; IDA:ParkinsonsUK-UCL. DR GO; GO:0010628; P:positive regulation of gene expression; IMP:UniProtKB. DR GO; GO:0050714; P:positive regulation of protein secretion; IMP:ParkinsonsUK-UCL. DR GO; GO:0046777; P:protein autophosphorylation; TAS:ParkinsonsUK-UCL. DR GO; GO:0061462; P:protein localization to lysosome; IMP:UniProtKB. DR GO; GO:0016243; P:regulation of autophagosome size; IDA:ParkinsonsUK-UCL. DR GO; GO:1903146; P:regulation of autophagy of mitochondrion; TAS:ParkinsonsUK-UCL. DR GO; GO:1904714; P:regulation of chaperone-mediated autophagy; TAS:ParkinsonsUK-UCL. DR GO; GO:0052548; P:regulation of endopeptidase activity; IMP:ParkinsonsUK-UCL. DR GO; GO:0033157; P:regulation of intracellular protein transport; NAS:ParkinsonsUK-UCL. DR GO; GO:1905165; P:regulation of lysosomal protein catabolic process; IMP:ParkinsonsUK-UCL. DR GO; GO:0016241; P:regulation of macroautophagy; IMP:ParkinsonsUK-UCL. DR GO; GO:0010821; P:regulation of mitochondrion organization; IDA:ParkinsonsUK-UCL. DR GO; GO:0043523; P:regulation of neuron apoptotic process; ISS:ParkinsonsUK-UCL. DR GO; GO:1900180; P:regulation of protein localization to nucleus; IMP:UniProtKB. DR GO; GO:2000152; P:regulation of ubiquitin-specific protease activity; IMP:UniProtKB. DR GO; GO:1903710; P:spermine transmembrane transport; IMP:UniProtKB. DR GO; GO:0055085; P:transmembrane transport; IBA:GO_Central. DR CDD; cd07542; P-type_ATPase_cation; 1. DR Gene3D; 3.40.1110.10; Calcium-transporting ATPase, cytoplasmic domain N; 1. DR Gene3D; 2.70.150.10; Calcium-transporting ATPase, cytoplasmic transduction domain A; 1. DR Gene3D; 1.20.1110.10; Calcium-transporting ATPase, transmembrane domain; 1. DR Gene3D; 3.40.50.1000; HAD superfamily/HAD-like; 1. DR InterPro; IPR023299; ATPase_P-typ_cyto_dom_N. DR InterPro; IPR018303; ATPase_P-typ_P_site. DR InterPro; IPR023298; ATPase_P-typ_TM_dom_sf. DR InterPro; IPR008250; ATPase_P-typ_transduc_dom_A_sf. DR InterPro; IPR036412; HAD-like_sf. DR InterPro; IPR023214; HAD_sf. DR InterPro; IPR006544; P-type_TPase_V. DR InterPro; IPR047819; P5A-ATPase_N. DR InterPro; IPR047821; P5B-type_ATPase. DR InterPro; IPR001757; P_typ_ATPase. DR InterPro; IPR044492; P_typ_ATPase_HD_dom. DR NCBIfam; TIGR01494; ATPase_P-type; 2. DR NCBIfam; TIGR01657; P-ATPase-V; 1. DR PANTHER; PTHR45630; CATION-TRANSPORTING ATPASE-RELATED; 1. DR PANTHER; PTHR45630:SF2; POLYAMINE-TRANSPORTING ATPASE 13A2; 1. DR Pfam; PF00122; E1-E2_ATPase; 1. DR Pfam; PF12409; P5-ATPase; 1. DR PRINTS; PR00119; CATATPASE. DR SFLD; SFLDG00002; C1.7:_P-type_atpase_like; 1. DR SFLD; SFLDF00027; p-type_atpase; 1. DR SUPFAM; SSF81653; Calcium ATPase, transduction domain A; 1. DR SUPFAM; SSF81665; Calcium ATPase, transmembrane domain M; 1. DR SUPFAM; SSF56784; HAD-like; 1. DR SUPFAM; SSF81660; Metal cation-transporting ATPase, ATP-binding domain N; 1. DR PROSITE; PS00154; ATPASE_E1_E2; 1. DR Genevisible; Q9NQ11; HS. PE 1: Evidence at protein level; KW 3D-structure; Alternative splicing; ATP-binding; Cytoplasmic vesicle; KW Disease variant; Endosome; Glycoprotein; Hereditary spastic paraplegia; KW Lipid-binding; Lysosome; Magnesium; Membrane; Metal-binding; KW Neurodegeneration; Neuronal ceroid lipofuscinosis; Nucleotide-binding; KW Parkinsonism; Phosphoprotein; Reference proteome; Translocase; KW Transmembrane; Transmembrane helix; Transport. FT CHAIN 1..1180 FT /note="Polyamine-transporting ATPase 13A2" FT /id="PRO_0000046423" FT TOPO_DOM 1..44 FT /note="Cytoplasmic" FT /evidence="ECO:0000305|PubMed:26134396" FT INTRAMEM 45..65 FT /evidence="ECO:0000255" FT TOPO_DOM 66..235 FT /note="Cytoplasmic" FT /evidence="ECO:0000305|PubMed:26134396" FT TRANSMEM 236..253 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 254..256 FT /note="Lumenal" FT /evidence="ECO:0000305|PubMed:26134396" FT TRANSMEM 257..276 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 277..427 FT /note="Cytoplasmic" FT /evidence="ECO:0000305|PubMed:26134396" FT TRANSMEM 428..448 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 449..463 FT /note="Lumenal" FT /evidence="ECO:0000305|PubMed:26134396" FT TRANSMEM 464..484 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 485..930 FT /note="Cytoplasmic" FT /evidence="ECO:0000305|PubMed:26134396" FT TRANSMEM 931..951 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 952..957 FT /note="Lumenal" FT /evidence="ECO:0000305|PubMed:26134396" FT TRANSMEM 958..978 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 979..994 FT /note="Cytoplasmic" FT /evidence="ECO:0000305|PubMed:26134396" FT TRANSMEM 995..1015 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 1016..1048 FT /note="Lumenal" FT /evidence="ECO:0000305|PubMed:26134396" FT TRANSMEM 1049..1069 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 1070..1080 FT /note="Cytoplasmic" FT /evidence="ECO:0000305|PubMed:26134396" FT TRANSMEM 1081..1101 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 1102..1117 FT /note="Lumenal" FT /evidence="ECO:0000305|PubMed:26134396" FT TRANSMEM 1118..1138 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 1139..1180 FT /note="Cytoplasmic" FT /evidence="ECO:0000305|PubMed:26134396" FT ACT_SITE 513 FT /note="4-aspartylphosphate intermediate" FT /evidence="ECO:0000269|PubMed:26134396" FT BINDING 878 FT /ligand="Mg(2+)" FT /ligand_id="ChEBI:CHEBI:18420" FT /evidence="ECO:0000250" FT BINDING 882 FT /ligand="Mg(2+)" FT /ligand_id="ChEBI:CHEBI:18420" FT /evidence="ECO:0000250" FT MOD_RES 151 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:23186163" FT CARBOHYD 1033 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000269|PubMed:26134396" FT CARBOHYD 1110 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT VAR_SEQ 155..159 FT /note="Missing (in isoform B and isoform 3)" FT /evidence="ECO:0000303|PubMed:14702039, FT ECO:0000303|PubMed:15489334, ECO:0000303|Ref.2, FT ECO:0000303|Ref.8" FT /id="VSP_007310" FT VAR_SEQ 805..843 FT /note="Missing (in isoform B)" FT /evidence="ECO:0000303|PubMed:15489334, ECO:0000303|Ref.8" FT /id="VSP_007311" FT VAR_SEQ 1079..1180 FT /note="VPFLVALALLSSVLVGLVLVPGLLQGPLALRNITDTGFKLLLLGLVTLNFVG FT AFMLESVLDQCLPACLRRLRPKRASKKRFKQLERELAEQPWPPLPAGPLR -> ERARP FT VPPRLPAPPPAQAGLQEALQAAGTRAGRAALAAAARRPPEVVQAHGHPRHWNSLPLSHQ FT LDPSPATPPPPPPTSLRLATVYTPPPRPPPPWGSVDYCPLPWTIPRRGGSPQLPSVLLS FT V (in isoform B)" FT /evidence="ECO:0000303|PubMed:15489334, ECO:0000303|Ref.8" FT /id="VSP_007312" FT VARIANT 12 FT /note="T -> M (in KRS; no effect on stability; no effect on FT location; decreased ATPase activity; dbSNP:rs151117874)" FT /evidence="ECO:0000269|PubMed:17485642, FT ECO:0000269|PubMed:22768177, ECO:0000269|PubMed:31996848" FT /id="VAR_058451" FT VARIANT 49 FT /note="G -> S (in dbSNP:rs56379718)" FT /evidence="ECO:0000269|PubMed:19085912" FT /id="VAR_058452" FT VARIANT 182 FT /note="F -> L (in KRS; decreased protein stability; loss of FT autophosphorylation; increased degradation by proteasome; FT novel location to endoplasmic reticulum; loss of lysosomal FT membrane location; impaired autophagosome-lysosome fusion; FT impaired degradation of protein aggregates)" FT /evidence="ECO:0000269|PubMed:18413573, FT ECO:0000269|PubMed:22768177, ECO:0000269|PubMed:28137957, FT ECO:0000269|PubMed:30538141" FT /id="VAR_066019" FT VARIANT 294 FT /note="R -> Q (in dbSNP:rs56367069)" FT /evidence="ECO:0000269|PubMed:19085912" FT /id="VAR_058453" FT VARIANT 389 FT /note="P -> L (in dbSNP:rs56275621)" FT /evidence="ECO:0000269|PubMed:19085912" FT /id="VAR_058454" FT VARIANT 441 FT /note="I -> F (in KRS; uncertain significance; associated FT in cis with Thr-1069 in one individual; dbSNP:rs772446950)" FT /evidence="ECO:0000269|PubMed:29903538" FT /id="VAR_083537" FT VARIANT 504 FT /note="G -> R (in KRS; decreased protein stability; FT increased degradation by proteasome; novel location to FT endoplasmic reticulum; loss of lysosomal membrane location; FT impaired autophagosome-lysosome fusion; impaired FT degradation of protein aggregates; dbSNP:rs121918227)" FT /evidence="ECO:0000269|PubMed:17485642, FT ECO:0000269|PubMed:22768177, ECO:0000269|PubMed:30538141" FT /id="VAR_058455" FT VARIANT 517 FT /note="T -> I (in SPG78; no effect on protein stability; FT loss of autophosphorylation; loss of lysosomal location; FT loss of ATPase activity; dbSNP:rs1057519291)" FT /evidence="ECO:0000269|PubMed:28137957, FT ECO:0000269|PubMed:31996848" FT /id="VAR_078055" FT VARIANT 522 FT /note="G -> V (in KRS; uncertain significance)" FT /evidence="ECO:0000269|PubMed:22296644" FT /id="VAR_078056" FT VARIANT 533 FT /note="G -> R (in a patient with early onset Parkinson FT disease and KRS; decreased ATPase activity; no effect on FT autophosphorylation; no effect on stability; no effect on FT location)" FT /evidence="ECO:0000269|PubMed:17485642, FT ECO:0000269|PubMed:22768177, ECO:0000269|PubMed:28137957, FT ECO:0000269|PubMed:31996848" FT /id="VAR_058456" FT VARIANT 578 FT /note="V -> G (in dbSNP:rs56186751)" FT /evidence="ECO:0000269|PubMed:19085912" FT /id="VAR_058457" FT VARIANT 746 FT /note="A -> T (in KRS; decreased ATPase activity; no effect FT on stability; no effect on location; dbSNP:rs147277743)" FT /evidence="ECO:0000269|PubMed:19015489, FT ECO:0000269|PubMed:22768177, ECO:0000269|PubMed:31996848" FT /id="VAR_058458" FT VARIANT 762 FT /note="R -> W (in dbSNP:rs55635527)" FT /evidence="ECO:0000269|PubMed:19085912" FT /id="VAR_058459" FT VARIANT 776 FT /note="V -> I (in dbSNP:rs56170027)" FT /evidence="ECO:0000269|PubMed:19085912" FT /id="VAR_058460" FT VARIANT 854 FT /note="M -> R (in KRS; some patients manifest FT neuropathologic findings suggestive of neuronal ceroid FT lipofuscinosis; dbSNP:rs587777053)" FT /evidence="ECO:0000269|PubMed:22388936" FT /id="VAR_070194" FT VARIANT 877 FT /note="G -> R (in KRS; found in two affected brothers also FT carrying C-481 in FBXO7; decreased protein stability; FT increased degradation by proteasome; novel location to FT endoplasmic reticulum; loss of ATPase activity; loss of FT autophosphorylation; dbSNP:rs144701072)" FT /evidence="ECO:0000269|PubMed:20853184, FT ECO:0000269|PubMed:22768177, ECO:0000269|PubMed:31996848" FT /id="VAR_066020" FT VARIANT 946 FT /note="I -> F (in dbSNP:rs55708915)" FT /evidence="ECO:0000269|PubMed:19085912" FT /id="VAR_058461" FT VARIANT 1059 FT /note="L -> R (in KRS; the mutant protein is retained in FT the endoplasmic reticulum; dbSNP:rs137853967)" FT /evidence="ECO:0000269|PubMed:21542062" FT /id="VAR_066021" FT VARIANT 1069 FT /note="A -> T (in KRS; uncertain significance; associated FT in cis with Phe-441 in one individual; dbSNP:rs774238872)" FT /evidence="ECO:0000269|PubMed:29903538" FT /id="VAR_083538" FT MUTAGEN 59 FT /note="G->A: No effect on lipid binding." FT /evidence="ECO:0000269|PubMed:26134396" FT MUTAGEN 66..68 FT /note="RWK->AWA: Reduces lipid binding." FT /evidence="ECO:0000269|PubMed:26134396" FT MUTAGEN 74..78 FT /note="RLRLR->ALALA: Reduces lipid binding." FT /evidence="ECO:0000269|PubMed:26134396" FT MUTAGEN 160..164 FT /note="KRVLR->AAVLA: Reduces lipid binding." FT /evidence="ECO:0000269|PubMed:26134396" FT MUTAGEN 348 FT /note="E->A: Autophosphorylated but displays limited FT spermine-induced ATPase activity and lacks spermine-induced FT dephosphorylation." FT /evidence="ECO:0000269|PubMed:31996848" FT MUTAGEN 472 FT /note="A->V: Reduced spermine-induced ATPase activity and FT lack of spermine-induced dephosphorylation." FT /evidence="ECO:0000269|PubMed:31996848" FT MUTAGEN 513 FT /note="D->N: Loss of ATPase function, autophosphorylation FT and protection against mitochondrial stress." FT /evidence="ECO:0000269|PubMed:26134396, FT ECO:0000269|PubMed:28137957, ECO:0000269|PubMed:31996848" FT MUTAGEN 967 FT /note="D->N: Reduced spermine-induced ATPase activity." FT /evidence="ECO:0000269|PubMed:31996848" FT MUTAGEN 1033 FT /note="N->A: Abolishes glycosylation." FT /evidence="ECO:0000269|PubMed:26134396" FT MUTAGEN 1067 FT /note="K->A: Reduced spermine-induced ATPase activity." FT /evidence="ECO:0000269|PubMed:31996848" FT CONFLICT 322 FT /note="Q -> R (in Ref. 6; AAH30267)" FT /evidence="ECO:0000305" FT CONFLICT 855..858 FT /note="APEQ -> IPRA (in Ref. 8; CAA08912)" FT /evidence="ECO:0000305" FT CONFLICT 861 FT /note="E -> V (in Ref. 8; CAA08912)" FT /evidence="ECO:0000305" FT STRAND 36..41 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 44..55 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 60..67 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 69..76 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 77..79 FT /evidence="ECO:0007829|PDB:7N72" FT TURN 82..84 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 86..91 FT /evidence="ECO:0007829|PDB:7N72" FT TURN 95..98 FT /evidence="ECO:0007829|PDB:7VPK" FT STRAND 102..106 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 109..111 FT /evidence="ECO:0007829|PDB:7M5X" FT STRAND 164..168 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 171..176 FT /evidence="ECO:0007829|PDB:7N72" FT TURN 177..180 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 181..184 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 185..187 FT /evidence="ECO:0007829|PDB:7N72" FT TURN 188..191 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 194..199 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 200..202 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 206..216 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 228..235 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 239..253 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 257..289 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 294..299 FT /evidence="ECO:0007829|PDB:7N72" FT TURN 300..302 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 303..308 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 309..311 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 317..320 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 322..327 FT /evidence="ECO:0007829|PDB:7VPI" FT STRAND 329..341 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 343..346 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 350..355 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 361..363 FT /evidence="ECO:0007829|PDB:7N72" FT TURN 366..369 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 370..372 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 379..384 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 386..397 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 399..401 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 403..412 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 422..449 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 454..468 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 473..491 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 493..497 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 498..505 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 508..512 FT /evidence="ECO:0007829|PDB:7N72" FT TURN 516..518 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 524..529 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 533..535 FT /evidence="ECO:0007829|PDB:7VPK" FT STRAND 540..542 FT /evidence="ECO:0007829|PDB:7M5X" FT HELIX 543..545 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 550..557 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 562..564 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 567..570 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 572..581 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 584..586 FT /evidence="ECO:0007829|PDB:7M5X" FT STRAND 593..596 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 602..604 FT /evidence="ECO:0007829|PDB:7M5X" FT TURN 610..612 FT /evidence="ECO:0007829|PDB:7M5V" FT HELIX 613..615 FT /evidence="ECO:0007829|PDB:7M5V" FT STRAND 622..628 FT /evidence="ECO:0007829|PDB:7N72" FT TURN 632..634 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 636..642 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 644..647 FT /evidence="ECO:0007829|PDB:7VPK" FT STRAND 650..655 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 657..660 FT /evidence="ECO:0007829|PDB:7N72" FT TURN 661..663 FT /evidence="ECO:0007829|PDB:7N72" FT TURN 666..668 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 673..681 FT /evidence="ECO:0007829|PDB:7N72" FT TURN 682..684 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 686..694 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 701..704 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 709..713 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 714..725 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 732..741 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 745..749 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 754..763 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 765..767 FT /evidence="ECO:0007829|PDB:7N70" FT STRAND 771..779 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 783..785 FT /evidence="ECO:0007829|PDB:7M5X" FT STRAND 788..794 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 821..826 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 827..836 FT /evidence="ECO:0007829|PDB:7N72" FT TURN 838..840 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 841..847 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 848..853 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 856..868 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 873..877 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 880..882 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 883..888 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 889..894 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 897..900 FT /evidence="ECO:0007829|PDB:7N72" FT TURN 901..903 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 905..912 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 915..953 FT /evidence="ECO:0007829|PDB:7N72" FT TURN 954..956 FT /evidence="ECO:0007829|PDB:7VPI" FT HELIX 960..967 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 969..978 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 995..998 FT /evidence="ECO:0007829|PDB:7N74" FT HELIX 999..1024 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 1025..1028 FT /evidence="ECO:0007829|PDB:7M5V" FT STRAND 1034..1036 FT /evidence="ECO:0007829|PDB:7N73" FT TURN 1038..1041 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 1045..1065 FT /evidence="ECO:0007829|PDB:7N72" FT TURN 1069..1071 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 1075..1077 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 1079..1097 FT /evidence="ECO:0007829|PDB:7N72" FT STRAND 1100..1102 FT /evidence="ECO:0007829|PDB:7M5X" FT TURN 1103..1107 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 1114..1149 FT /evidence="ECO:0007829|PDB:7N72" FT HELIX 1158..1168 FT /evidence="ECO:0007829|PDB:7N72" SQ SEQUENCE 1180 AA; 128794 MW; 98D13745D3B615BE CRC64; MSADSSPLVG STPTGYGTLT IGTSIDPLSS SVSSVRLSGY CGSPWRVIGY HVVVWMMAGI PLLLFRWKPL WGVRLRLRPC NLAHAETLVI EIRDKEDSSW QLFTVQVQTE AIGEGSLEPS PQSQAEDGRS QAAVGAVPEG AWKDTAQLHK SEEAVSVGQK RVLRYYLFQG QRYIWIETQQ AFYQVSLLDH GRSCDDVHRS RHGLSLQDQM VRKAIYGPNV ISIPVKSYPQ LLVDEALNPY YGFQAFSIAL WLADHYYWYA LCIFLISSIS ICLSLYKTRK QSQTLRDMVK LSMRVCVCRP GGEEEWVDSS ELVPGDCLVL PQEGGLMPCD AALVAGECMV NESSLTGESI PVLKTALPEG LGPYCAETHR RHTLFCGTLI LQARAYVGPH VLAVVTRTGF CTAKGGLVSS ILHPRPINFK FYKHSMKFVA ALSVLALLGT IYSIFILYRN RVPLNEIVIR ALDLVTVVVP PALPAAMTVC TLYAQSRLRR QGIFCIHPLR INLGGKLQLV CFDKTGTLTE DGLDVMGVVP LKGQAFLPLV PEPRRLPVGP LLRALATCHA LSRLQDTPVG DPMDLKMVES TGWVLEEEPA ADSAFGTQVL AVMRPPLWEP QLQAMEEPPV PVSVLHRFPF SSALQRMSVV VAWPGATQPE AYVKGSPELV AGLCNPETVP TDFAQMLQSY TAAGYRVVAL ASKPLPTVPS LEAAQQLTRD TVEGDLSLLG LLVMRNLLKP QTTPVIQALR RTRIRAVMVT GDNLQTAVTV ARGCGMVAPQ EHLIIVHATH PERGQPASLE FLPMESPTAV NGVKDPDQAA SYTVEPDPRS RHLALSGPTF GIIVKHFPKL LPKVLVQGTV FARMAPEQKT ELVCELQKLQ YCVGMCGDGA NDCGALKAAD VGISLSQAEA SVVSPFTSSM ASIECVPMVI REGRCSLDTS FSVFKYMALY SLTQFISVLI LYTINTNLGD LQFLAIDLVI TTTVAVLMSR TGPALVLGRV RPPGALLSVP VLSSLLLQMV LVTGVQLGGY FLTLAQPWFV PLNRTVAAPD NLPNYENTVV FSLSSFQYLI LAAAVSKGAP FRRPLYTNVP FLVALALLSS VLVGLVLVPG LLQGPLALRN ITDTGFKLLL LGLVTLNFVG AFMLESVLDQ CLPACLRRLR PKRASKKRFK QLERELAEQP WPPLPAGPLR //