ID NGRN_HUMAN Reviewed; 291 AA. AC Q9NPE2; B2R6M8; Q4V9L7; Q9HBL4; DT 10-JUL-2007, integrated into UniProtKB/Swiss-Prot. DT 05-OCT-2010, sequence version 2. DT 24-JAN-2024, entry version 180. DE RecName: Full=Neugrin; DE AltName: Full=Mesenchymal stem cell protein DSC92; DE AltName: Full=Neurite outgrowth-associated protein; DE AltName: Full=Spinal cord-derived protein FI58G; DE Flags: Precursor; GN Name=NGRN {ECO:0000303|PubMed:27667664, ECO:0000312|HGNC:HGNC:18077}; GN Synonyms=FI58G; ORFNames=HT020; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), SUBCELLULAR LOCATION, AND TISSUE RP SPECIFICITY. RX PubMed=11118320; DOI=10.1006/bbrc.2000.3971; RA Ishigaki S., Niwa J., Yoshihara T., Mitsuma N., Doyu M., Sobue G.; RT "Two novel genes, human neugrin and mouse m-neugrin, are upregulated with RT neuronal differentiation in neuroblastoma cells."; RL Biochem. Biophys. Res. Commun. 279:526-533(2000). RN [2] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2). RC TISSUE=Mesenchymal stem cell; RA van den Bos C., Mbalaviele G., Thiede M.; RT "cDNA DSC92 expressed by osteogenic human mesenchymal stem cells."; RL Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RG The European IMAGE consortium; RL Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RC TISSUE=Kidney; RX PubMed=17974005; DOI=10.1186/1471-2164-8-399; RA Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., RA Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., RA Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., RA Wiemann S., Schupp I.; RT "The full-ORF clone resource of the German cDNA consortium."; RL BMC Genomics 8:399-399(2007). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=16572171; DOI=10.1038/nature04601; RA Zody M.C., Garber M., Sharpe T., Young S.K., Rowen L., O'Neill K., RA Whittaker C.A., Kamal M., Chang J.L., Cuomo C.A., Dewar K., RA FitzGerald M.G., Kodira C.D., Madan A., Qin S., Yang X., Abbasi N., RA Abouelleil A., Arachchi H.M., Baradarani L., Birditt B., Bloom S., RA Bloom T., Borowsky M.L., Burke J., Butler J., Cook A., DeArellano K., RA DeCaprio D., Dorris L. III, Dors M., Eichler E.E., Engels R., Fahey J., RA Fleetwood P., Friedman C., Gearin G., Hall J.L., Hensley G., Johnson E., RA Jones C., Kamat A., Kaur A., Locke D.P., Madan A., Munson G., Jaffe D.B., RA Lui A., Macdonald P., Mauceli E., Naylor J.W., Nesbitt R., Nicol R., RA O'Leary S.B., Ratcliffe A., Rounsley S., She X., Sneddon K.M.B., RA Stewart S., Sougnez C., Stone S.M., Topham K., Vincent D., Wang S., RA Zimmer A.R., Birren B.W., Hood L., Lander E.S., Nusbaum C.; RT "Analysis of the DNA sequence and duplication history of human chromosome RT 15."; RL Nature 440:671-675(2006). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2). RC TISSUE=Brain, Chondrosarcoma, Lung, Muscle, Placenta, and Testis; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [7] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 20-291 (ISOFORM 2). RX PubMed=10931946; DOI=10.1073/pnas.160270997; RA Hu R.-M., Han Z.-G., Song H.-D., Peng Y.-D., Huang Q.-H., Ren S.-X., RA Gu Y.-J., Huang C.-H., Li Y.-B., Jiang C.-L., Fu G., Zhang Q.-H., Gu B.-W., RA Dai M., Mao Y.-F., Gao G.-F., Rong R., Ye M., Zhou J., Xu S.-H., Gu J., RA Shi J.-X., Jin W.-R., Zhang C.-K., Wu T.-M., Huang G.-Y., Chen Z., RA Chen M.-D., Chen J.-L.; RT "Gene expression profiling in the human hypothalamus-pituitary-adrenal axis RT and full-length cDNA cloning."; RL Proc. Natl. Acad. Sci. U.S.A. 97:9543-9548(2000). RN [8] RP NUCLEOTIDE SEQUENCE [MRNA] OF 73-291 (ISOFORM 1). RA Hu X., Xu Y., Peng X., Yuan J., Qiang B.; RL Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases. RN [9] RP PARTIAL NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RC TISSUE=Neuroblastoma; RX PubMed=14702039; DOI=10.1038/ng1285; RA Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., RA Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., RA Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S., RA Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., RA Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., RA Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., RA Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., RA Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., RA Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., RA Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., RA Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., RA Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., RA Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., RA Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., RA Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., RA Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., RA Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., RA Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., RA Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., RA Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., RA Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., RA Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., RA Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., RA Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., RA Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., RA Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., RA Isogai T., Sugano S.; RT "Complete sequencing and characterization of 21,243 full-length human RT cDNAs."; RL Nat. Genet. 36:40-45(2004). RN [10] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=18669648; DOI=10.1073/pnas.0805139105; RA Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., RA Elledge S.J., Gygi S.P.; RT "A quantitative atlas of mitotic phosphorylation."; RL Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008). RN [11] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-41, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=20068231; DOI=10.1126/scisignal.2000475; RA Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., RA Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M.; RT "Quantitative phosphoproteomics reveals widespread full phosphorylation RT site occupancy during mitosis."; RL Sci. Signal. 3:RA3-RA3(2010). RN [12] RP SUBCELLULAR LOCATION, SUBUNIT, AND FUNCTION. RX PubMed=27667664; DOI=10.1016/j.cmet.2016.08.017; RA Arroyo J.D., Jourdain A.A., Calvo S.E., Ballarano C.A., Doench J.G., RA Root D.E., Mootha V.K.; RT "A Genome-wide CRISPR Death Screen Identifies Genes Essential for Oxidative RT Phosphorylation."; RL Cell Metab. 24:875-885(2016). CC -!- FUNCTION: Plays an essential role in mitochondrial ribosome biogenesis. CC As a component of a functional protein-RNA module, consisting of RCC1L, CC NGRN, RPUSD3, RPUSD4, TRUB2, FASTKD2 and 16S mitochondrial ribosomal CC RNA (16S mt-rRNA), controls 16S mt-rRNA abundance and is required for CC intra-mitochondrial translation of core subunits of the oxidative CC phosphorylation system. {ECO:0000269|PubMed:27667664}. CC -!- SUBUNIT: Forms a regulatory protein-RNA complex, consisting of RCC1L, CC NGRN, RPUSD3, RPUSD4, TRUB2, FASTKD2 and 16S mt-rRNA. Interacts with CC 16S mt-rRNA; this interaction is direct. {ECO:0000269|PubMed:27667664}. CC -!- INTERACTION: CC Q9NPE2; Q6ZYL4: GTF2H5; NbExp=3; IntAct=EBI-2683432, EBI-6380438; CC Q9NPE2; Q5VVQ6: YOD1; NbExp=3; IntAct=EBI-2683432, EBI-2510804; CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:11118320}. Secreted CC {ECO:0000305}. Mitochondrion membrane {ECO:0000269|PubMed:27667664}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q9NPE2-2; Sequence=Displayed; CC Name=2; CC IsoId=Q9NPE2-3; Sequence=VSP_039710, VSP_039711; CC -!- TISSUE SPECIFICITY: Expressed at high levels in heart, brain and CC skeletal muscle. In brain, mainly expressed in neurons rather than CC glial cells. {ECO:0000269|PubMed:11118320}. CC -!- INDUCTION: Highly up-regulated in neuroblastostoma cells by retinoic CC acid treatment inducing neurite outgrowth. CC -!- MISCELLANEOUS: [Isoform 2]: May be produced at very low levels due to a CC premature stop codon in the mRNA, leading to nonsense-mediated mRNA CC decay. {ECO:0000305}. CC -!- SIMILARITY: Belongs to the neugrin family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAF65447.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; CC Sequence=AAG09725.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; CC Sequence=AAG09725.1; Type=Frameshift; Evidence={ECO:0000305}; CC Sequence=AAH01682.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; CC Sequence=AAH07222.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; CC Sequence=AAH09389.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; CC Sequence=AAH17192.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; CC Sequence=BAB21533.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; CC Sequence=BAB21533.1; Type=Frameshift; Evidence={ECO:0000305}; CC Sequence=BAG35525.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; CC Sequence=BAG35525.1; Type=Miscellaneous discrepancy; Note=N-terminus does not match isoform 2.; Evidence={ECO:0000305}; CC Sequence=CAB96088.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; CC Sequence=CAD39160.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AB029315; BAB21533.1; ALT_SEQ; mRNA. DR EMBL; AF242770; AAF65447.1; ALT_SEQ; mRNA. DR EMBL; AL360142; CAB96088.1; ALT_SEQ; mRNA. DR EMBL; AL834503; CAD39160.1; ALT_SEQ; mRNA. DR EMBL; AC091167; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; BC001682; AAH01682.1; ALT_SEQ; mRNA. DR EMBL; BC007222; AAH07222.1; ALT_SEQ; mRNA. DR EMBL; BC009389; AAH09389.1; ALT_SEQ; mRNA. DR EMBL; BC017192; AAH17192.1; ALT_SEQ; mRNA. DR EMBL; BC096824; AAH96824.1; -; mRNA. DR EMBL; BG719592; -; NOT_ANNOTATED_CDS; mRNA. DR EMBL; AF225423; AAG09725.1; ALT_SEQ; mRNA. DR EMBL; AY049780; AAL15437.1; -; mRNA. DR EMBL; AK312641; BAG35525.1; ALT_SEQ; mRNA. DR CCDS; CCDS32329.1; -. [Q9NPE2-2] DR PIR; JC7563; JC7563. DR RefSeq; NP_001028260.2; NM_001033088.1. [Q9NPE2-2] DR AlphaFoldDB; Q9NPE2; -. DR SMR; Q9NPE2; -. DR BioGRID; 119482; 245. DR IntAct; Q9NPE2; 36. DR MINT; Q9NPE2; -. DR STRING; 9606.ENSP00000368389; -. DR GlyCosmos; Q9NPE2; 3 sites, No reported glycans. DR GlyGen; Q9NPE2; 3 sites. DR iPTMnet; Q9NPE2; -. DR PhosphoSitePlus; Q9NPE2; -. DR BioMuta; NGRN; -. DR DMDM; 306526226; -. DR EPD; Q9NPE2; -. DR jPOST; Q9NPE2; -. DR MassIVE; Q9NPE2; -. DR MaxQB; Q9NPE2; -. DR PaxDb; 9606-ENSP00000368389; -. DR PeptideAtlas; Q9NPE2; -. DR ProteomicsDB; 81977; -. [Q9NPE2-2] DR ProteomicsDB; 81978; -. [Q9NPE2-3] DR Pumba; Q9NPE2; -. DR Antibodypedia; 28784; 152 antibodies from 25 providers. DR DNASU; 51335; -. DR Ensembl; ENST00000379095.5; ENSP00000368389.4; ENSG00000182768.9. [Q9NPE2-2] DR GeneID; 51335; -. DR KEGG; hsa:51335; -. DR MANE-Select; ENST00000379095.5; ENSP00000368389.4; NM_001033088.3; NP_001028260.2. DR UCSC; uc002bpf.2; human. [Q9NPE2-2] DR AGR; HGNC:18077; -. DR CTD; 51335; -. DR DisGeNET; 51335; -. DR GeneCards; NGRN; -. DR HGNC; HGNC:18077; NGRN. DR HPA; ENSG00000182768; Tissue enhanced (skeletal). DR MIM; 616718; gene. DR neXtProt; NX_Q9NPE2; -. DR OpenTargets; ENSG00000182768; -. DR PharmGKB; PA142671265; -. DR VEuPathDB; HostDB:ENSG00000182768; -. DR eggNOG; ENOG502S5A6; Eukaryota. DR GeneTree; ENSGT00390000014472; -. DR HOGENOM; CLU_076903_1_0_1; -. DR InParanoid; Q9NPE2; -. DR OMA; AMDQIRY; -. DR OrthoDB; 2971965at2759; -. DR PhylomeDB; Q9NPE2; -. DR TreeFam; TF324463; -. DR PathwayCommons; Q9NPE2; -. DR SignaLink; Q9NPE2; -. DR BioGRID-ORCS; 51335; 113 hits in 1154 CRISPR screens. DR ChiTaRS; NGRN; human. DR GenomeRNAi; 51335; -. DR Pharos; Q9NPE2; Tbio. DR PRO; PR:Q9NPE2; -. DR Proteomes; UP000005640; Chromosome 15. DR RNAct; Q9NPE2; Protein. DR Bgee; ENSG00000182768; Expressed in dorsolateral prefrontal cortex and 101 other cell types or tissues. DR ExpressionAtlas; Q9NPE2; baseline and differential. DR GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell. DR GO; GO:0045171; C:intercellular bridge; IDA:HPA. DR GO; GO:0031966; C:mitochondrial membrane; IDA:UniProtKB. DR GO; GO:0005739; C:mitochondrion; IDA:HPA. DR GO; GO:0072686; C:mitotic spindle; IDA:HPA. DR GO; GO:0016604; C:nuclear body; IDA:HPA. DR GO; GO:0005654; C:nucleoplasm; IDA:HPA. DR GO; GO:0005634; C:nucleus; IBA:GO_Central. DR GO; GO:0003723; F:RNA binding; HDA:UniProtKB. DR GO; GO:0019843; F:rRNA binding; IDA:UniProtKB. DR GO; GO:0061668; P:mitochondrial ribosome assembly; IMP:UniProtKB. DR GO; GO:0030182; P:neuron differentiation; NAS:UniProtKB. DR GO; GO:0070131; P:positive regulation of mitochondrial translation; IMP:UniProtKB. DR InterPro; IPR010487; NGRN/Rrg9. DR PANTHER; PTHR13475; NEUGRIN; 1. DR PANTHER; PTHR13475:SF4; NEUGRIN; 1. DR Pfam; PF06413; Neugrin; 1. DR Genevisible; Q9NPE2; HS. PE 1: Evidence at protein level; KW Alternative splicing; Developmental protein; Differentiation; Glycoprotein; KW Membrane; Mitochondrion; Nucleus; Phosphoprotein; Reference proteome; KW Secreted; Signal. FT SIGNAL 1..15 FT /evidence="ECO:0000255" FT CHAIN 16..291 FT /note="Neugrin" FT /id="PRO_0000294483" FT REGION 26..48 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 155..270 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 182..197 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 198..217 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 41 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:20068231" FT CARBOHYD 158 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 186 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 268 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT VAR_SEQ 55..64 FT /note="STLKRQKQAI -> RYRLLPGPSA (in isoform 2)" FT /evidence="ECO:0000303|PubMed:10931946, FT ECO:0000303|PubMed:11118320, ECO:0000303|PubMed:15489334, FT ECO:0000303|PubMed:17974005, ECO:0000303|Ref.2, FT ECO:0000303|Ref.3" FT /id="VSP_039710" FT VAR_SEQ 65..291 FT /note="Missing (in isoform 2)" FT /evidence="ECO:0000303|PubMed:10931946, FT ECO:0000303|PubMed:11118320, ECO:0000303|PubMed:15489334, FT ECO:0000303|PubMed:17974005, ECO:0000303|Ref.2, FT ECO:0000303|Ref.3" FT /id="VSP_039711" FT VARIANT 174 FT /note="L -> F (in dbSNP:rs11073922)" FT /id="VAR_053905" FT VARIANT 267 FT /note="D -> G (in dbSNP:rs16944113)" FT /id="VAR_053906" FT CONFLICT 28 FT /note="A -> C (in Ref. 2; BG719592)" FT /evidence="ECO:0000305" FT CONFLICT 32 FT /note="P -> R (in Ref. 7; AAG09725)" FT /evidence="ECO:0000305" SQ SEQUENCE 291 AA; 32408 MW; F0480D6D94BE2ACE CRC64; MAVTLSLLLG GRVCAAVTRC GFATRGVAGP GPIGREPDPD SDWEPEEREL QEVESTLKRQ KQAIRFQKIR RQMEAPGAPP RTLTWEAMEQ IRYLHEEFPE SWSVPRLAEG FDVSTDVIRR VLKSKFLPTL EQKLKQDQKV LKKAGLAHSL QHLRGSGNTS KLLPAGHSVS GSLLMPGHEA SSKDPNHSTA LKVIESDTHR TNTPRRRKGR NKEIQDLEES FVPVAAPLGH PRELQKYSSD SESPRGTGSG ALPSGQKLEE LKAEEPDNFS SKVVQRGREF FDSNGNFLYR I //