Q9NPA1 (KCMB3_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 99.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Calcium-activated potassium channel subunit beta-3 Alternative name(s): BK channel subunit beta-3 Short name=BKbeta3 Short name=Hbeta3 Calcium-activated potassium channel, subfamily M subunit beta-3 Charybdotoxin receptor subunit beta-3 K(VCA)beta-3 Maxi K channel subunit beta-3 Slo-beta-3 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 279 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Regulatory subunit of the calcium activated potassium KCNMA1 (maxiK) channel. Modulates the calcium sensitivity and gating kinetics of KCNMA1, thereby contributing to KCNMA1 channel diversity. Alters the functional properties of the current expressed by the KCNMA1 channel. Isoform 2, isoform 3 and isoform 4 partially inactivate the current of KCNBMA. Isoform 4 induces a fast and incomplete inactivation of KCNMA1 channel that is detectable only at large depolarizations. In contrast, isoform 1 does not induce detectable inactivation of KCNMA1. Two or more subunits of KCNMB3 are required to block the KCNMA1 tetramer. Ref.3 Ref.9 |
| Subunit structure | Interacts with KCNMA1 tetramer. There are probably 4 molecules of KCMNB3 per KCNMA1 tetramer. Ref.2 |
| Subcellular location | |
| Tissue specificity | Isoform 1, isoform 3 and isoform 4 are widely expressed. Isoform 2 is expressed placenta, pancreas, kidney and heart. Isoform 1 and isoform 3 are highly expressed in pancreas and testis. Ref.1 Ref.2 Ref.3 |
| Domain | Isoform 4 cytoplasmic N-terminus domain participates in the partial inactivation of KCNMA1, possibly by binding to a receptor site. Ref.10 Ref.11 Ref.13 The extracellular domain forms gates to block ion permeation, providing a mechanism by which current can be rapidly diminished upon cellular repolarization. Ref.10 Ref.11 Ref.13 |
| Post-translational modification | N-glycosylated. Ref.4 The extracellular domain contains disulfide bond essential for the gating mechanism. |
| Sequence similarities | Belongs to the KCNMB (TC 8.A.14.1) family. KCNMB3 subfamily. [View classification] |
Ontologies
| Keywords | |
|---|---|
| Biological process | Ion transport Transport |
| Cellular component | Membrane |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Transmembrane Transmembrane helix |
| Molecular function | Ion channel |
| PTM | Disulfide bond Glycoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | blood coagulation Traceable author statement. Source: Reactome detection of calcium ionInferred from direct assay Ref.2. Source: UniProtKB regulation of action potential in neuronInferred from direct assay Ref.2. Source: UniProtKB synaptic transmissionTraceable author statement. Source: Reactome |
| Cellular_component | voltage-gated potassium channel complex Inferred from direct assay Ref.2. Source: UniProtKB |
| Molecular_function | calcium-activated potassium channel activity Inferred from direct assay Ref.2. Source: UniProtKB potassium channel regulator activityNon-traceable author statement Ref.3Ref.4. Source: UniProtKB |
| Complete GO annotation... | |
Alternative products
| This entry describes 5 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q9NPA1-1) Also known as: 3d; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9NPA1-2) Also known as: 3a; The sequence of this isoform differs from the canonical sequence as follows: 1-22: MDFSPSSELGFHFVAFILLTRH → MQPFSIPVQITLQGSRRRQG | ||||||
| Isoform 3 (identifier: Q9NPA1-3) Also known as: 3c; The sequence of this isoform differs from the canonical sequence as follows: 1-22: MDFSPSSELGFHFVAFILLTRH → MFPLLYELTAVSPSPFPQ | ||||||
| Isoform 4 (identifier: Q9NPA1-4) Also known as: 3b; The sequence of this isoform differs from the canonical sequence as follows: 1-22: Missing. 23-23: R → M | ||||||
| Isoform 5 (identifier: Q9NPA1-5) The sequence of this isoform differs from the canonical sequence as follows: 1-22: MDFSPSSELGFHFVAFILLTRH → MQPFSIPVQITLQGSRRRQG 154-175: CFYTPKCHQDRNDLLNSALDIK → RDVTDCRVKEKQTLTVSDEHKQ 176-279: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 279 | 279 | Calcium-activated potassium channel subunit beta-3 | PRO_0000187054 | |||||
Regions | |||||||||
| Topological domain | 1 – 60 | 60 | Cytoplasmic Potential | ||||||
| Transmembrane | 61 – 81 | 21 | Helical; Name=1; Potential | ||||||
| Topological domain | 82 – 207 | 126 | Extracellular Potential | ||||||
| Transmembrane | 208 – 228 | 21 | Helical; Name=2; Potential | ||||||
| Topological domain | 229 – 279 | 51 | Cytoplasmic Potential | ||||||
Amino acid modifications | |||||||||
| Glycosylation | 131 | 1 | N-linked (GlcNAc...) Potential | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 22 | 22 | MDFSP…LLTRH → MQPFSIPVQITLQGSRRRQG in isoform 2 and isoform 5. | VSP_009827 | |||||
| Alternative sequence | 1 – 22 | 22 | MDFSP…LLTRH → MFPLLYELTAVSPSPFPQ in isoform 3. | VSP_009828 | |||||
| Alternative sequence | 1 – 22 | 22 | Missing in isoform 4. | VSP_009829 | |||||
| Alternative sequence | 23 | 1 | R → M in isoform 4. | VSP_009830 | |||||
| Alternative sequence | 154 – 175 | 22 | CFYTP…ALDIK → RDVTDCRVKEKQTLTVSDEH KQ in isoform 5. | VSP_046090 | |||||
| Alternative sequence | 176 – 279 | 104 | Missing in isoform 5. | VSP_046091 | |||||
| Natural variant | 44 | 1 | D → G. Corresponds to variant rs1170672 [ dbSNP | Ensembl ]. | VAR_018173 | |||||
| Natural variant | 53 | 1 | A → T. Ref.1 Ref.2 Ref.3 Ref.4 Ref.5 Corresponds to variant rs7645550 [ dbSNP | Ensembl ]. | VAR_018174 | |||||
| Natural variant | 75 | 1 | L → V. Ref.12 Corresponds to variant rs2276802 [ dbSNP | Ensembl ]. | VAR_018175 | |||||
| Natural variant | 165 | 1 | N → S. Ref.3 Ref.12 | VAR_018176 | |||||
| Natural variant | 230 | 1 | M → T. Ref.12 | VAR_018177 | |||||
Experimental info | |||||||||
| Sequence conflict | 24 | 1 | T → P in BAH14265. Ref.6 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Identification of a putative regulatory subunit of a calcium-activated potassium channel in the dup(3q) syndrome region and a related sequence on 22q11.2." Riazi M.A., Brinkman-Mills P., Johnson A., Naylor S.L., Minoshima S., Shimizu N., Baldini A., McDermid H.E. Genomics 62:90-94(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3), VARIANT THR-53, TISSUE SPECIFICITY. |
| [2] | "Cloning and functional characterization of novel large conductance calcium-activated potassium channel beta subunits, hKCNMB3 and hKCNMB4." Brenner R., Jegla T.J., Wickenden A., Liu Y., Aldrich R.W. J. Biol. Chem. 275:6453-6461(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 4), VARIANT THR-53, TISSUE SPECIFICITY, INTERACTION WITH KCNMA1. Tissue: Brain. |
| [3] | "Cloning and functional expression of two families of Beta-subunits of the large conductance calcium-activated potassium channel." Uebele V.N., Lagrutta A.A., Wade T., Figueroa D.J., Liu Y., McKenna E., Austin C.P., Bennett P.B., Swanson R. J. Biol. Chem. 275:23211-23218(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORMS 1; 2; 3 AND 4), FUNCTION, ALTERNATIVE SPLICING, TISSUE SPECIFICITY, VARIANTS THR-53 AND SER-165. Tissue: Spleen. |
| [4] | "A neuronal beta subunit (KCNMB4) makes the large conductance, voltage- and Ca2+-activated K+ channel resistant to charybdotoxin and iberiotoxin." Meera P., Wallner M., Toro L. Proc. Natl. Acad. Sci. U.S.A. 97:5562-5567(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANT THR-53, GLYCOSYLATION. |
| [5] | "hKCNMB3 and hKCNMB4, cloning and characterization of two members of the large-conductance calcium-activated potassium channel beta subunit family." Behrens R., Nolting A., Reimann F., Schwarz M., Waldschuetz R., Pongs O. FEBS Lett. 474:99-106(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 4), VARIANT THR-53. |
| [6] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 5). Tissue: Uterus. |
| [7] | "The DNA sequence, annotation and analysis of human chromosome 3." Muzny D.M., Scherer S.E., Kaul R., Wang J., Yu J., Sudbrak R., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J. Gibbs R.A.Nature 440:1194-1198(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [8] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [9] | "Rectification and rapid activation at low Ca2+ of Ca2+-activated, voltage-dependent BK currents: consequences of rapid inactivation by a novel beta subunit." Xia X.-M., Ding J.-P., Zeng X.-H., Duan K.-L., Lingle C.J. J. Neurosci. 20:4890-4903(2000) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [10] | "Inactivation of BK channels mediated by the NH(2) terminus of the beta3b auxiliary subunit involves a two-step mechanism: possible separation of binding and blockade." Lingle C.J., Zeng X.-H., Ding J.-P., Xia X.-M. J. Gen. Physiol. 117:583-606(2001) [PubMed] [Europe PMC] [Abstract] Cited for: DOMAIN. |
| [11] | "Gating properties conferred on BK channels by the beta3b auxiliary subunit in the absence of its NH(2)- and COOH termini." Zeng X.-H., Ding J.-P., Xia X.-M., Lingle C.J. J. Gen. Physiol. 117:607-628(2001) [PubMed] [Europe PMC] [Abstract] Cited for: DOMAIN. |
| [12] | "Variants of the KCNMB3 regulatory subunit of maxi BK channels affect channel inactivation." Hu S., Labuda M.Z., Pandolfo M., Goss G.G., McDermid H.E., Ali D.W. Physiol. Genomics 15:191-198(2003) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS VAL-75; SER-165 AND THR-230. |
| [13] | "Redox-sensitive extracellular gates formed by auxiliary beta subunits of calcium-activated potassium channels." Zeng X.-H., Xia X.-M., Lingle C.J. Nat. Struct. Biol. 10:448-454(2003) [PubMed] [Europe PMC] [Abstract] Cited for: DISULFIDE BONDS, DOMAIN. |
| [14] | "New disguises for an old channel: MaxiK channel beta-subunits." Orio P., Rojas P., Ferreira G., Latorre R. News Physiol. Sci. 17:156-161(2002) [PubMed] [Europe PMC] [Abstract] Cited for: REVIEW. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF139471 mRNA. Translation: AAD54771.1. AF214561 mRNA. Translation: AAF36598.1. AF204159 Genomic DNA. Translation: AAF97031.1. AF204160 Genomic DNA. Translation: AAF97032.1. AF204161 Genomic DNA. Translation: AAF97033.1. AF204162 Genomic DNA. Translation: AAF97034.1. AF160968 mRNA. Translation: AAF67811.1. AF170916 mRNA. Translation: AAF89698.1. AK304837 mRNA. Translation: BAH14265.1. AC007823 Genomic DNA. No translation available. AC076966 Genomic DNA. No translation available. CH471052 Genomic DNA. Translation: EAW78418.1. CH471052 Genomic DNA. Translation: EAW78421.1. |
| IPI | IPI00249414. IPI00296154. IPI00299315. IPI00299880. IPI00922327. |
| RefSeq | NP_001157149.1. NM_001163677.1. NP_055222.3. NM_014407.3. NP_741979.1. NM_171828.1. NP_741980.1. NM_171829.2. NP_741981.1. NM_171830.1. |
| UniGene | Hs.591285. |
3D structure databases | |
| ProteinModelPortal | Q9NPA1. |
| SMR | Q9NPA1. Positions 16-56. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | 9606.ENSP00000319370. |
Protein family/group databases | |
| TCDB | 8.A.14.1.4. Ca2+-activated K+ channel auxiliary subunit slowpoke-beta (Slobeta) family. |
Polymorphism databases | |
| DMDM | 90111824. |
Proteomic databases | |
| PaxDb | Q9NPA1. |
| PRIDE | Q9NPA1. |
Protocols and materials databases | |
| DNASU | 27094. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000314235; ENSP00000319370; ENSG00000171121. ENST00000349697; ENSP00000327866; ENSG00000171121. ENST00000392685; ENSP00000376451; ENSG00000171121. ENST00000392686; ENSP00000376452; ENSG00000171121. ENST00000485523; ENSP00000418536; ENSG00000171121. ENST00000497599; ENSP00000417091; ENSG00000171121. |
| GeneID | 27094. |
| KEGG | hsa:27094. |
| UCSC | uc003fjm.3. human. uc003fjn.3. human. uc003fjo.3. human. uc003fjp.1. human. |
Organism-specific databases | |
| CTD | 27094. |
| GeneCards | GC03M178957. |
| HGNC | HGNC:6287. KCNMB3. |
| HPA | HPA015665. HPA019185. |
| MIM | 605222. gene. |
| neXtProt | NX_Q9NPA1. |
| PharmGKB | PA30067. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG29303. |
| HOGENOM | HOG000290180. |
| HOVERGEN | HBG108059. |
| InParanoid | Q9NPA1. |
| KO | K04939. |
| OMA | KPFMLST. |
| PhylomeDB | Q9NPA1. |
Enzyme and pathway databases | |
| Reactome | REACT_13685. Neuronal System. REACT_604. Hemostasis. |
Gene expression databases | |
| ArrayExpress | Q9NPA1. |
| Bgee | Q9NPA1. |
| CleanEx | HS_KCNMB2. HS_KCNMB3. |
| Genevestigator | Q9NPA1. |
| GermOnline | ENSG00000171121. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR003930. K_chnl_Ca-activ_BK_bsu. [Graphical view] |
| PANTHER | PTHR10258. PTHR10258. 1 hit. |
| Pfam | PF03185. CaKB. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChEMBL | CHEMBL3934. |
| GenomeRNAi | 27094. |
| NextBio | 49727. |
| SOURCE | Search... |
Entry information
| Entry name | KCMB3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9NPA1 Secondary accession number(s): B7Z9C9 Q9UHN3 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 3 Human chromosome 3: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
