Q9NP61 (ARFG3_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 110.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: ADP-ribosylation factor GTPase-activating protein 3 Short name=ARF GAP 3 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 516 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | GTPase-activating protein (GAP) for ADP ribosylation factor 1 (ARF1). Hydrolysis of ARF1-bound GTP may lead to dissociation of coatomer from Golgi-derived membranes to allow fusion with target membranes. Ref.8 |
| Enzyme regulation | GAP activity stimulated by phosphatidylinositol 4,5-bisphosphate (PIP2). Ref.8 |
| Subcellular location | Cytoplasm. Golgi apparatus membrane; Peripheral membrane protein; Cytoplasmic side. Note: Also found on peripheral punctate structures likely to be endoplasmic reticulum-Golgi intermediate compartment. Ref.11 |
| Tissue specificity | Widely expressed. Highest expression in endocrine glands (pancreas, pituitary gland, salivary gland, and prostate) and testis with a much higher expression in the testis than in the ovary. Ref.1 |
| Developmental stage | Expressed at higher level in adult thymus, brain and lung, than in corresponding fetal tissues. Expressed at lower level in spleen, heart, kidney and liver during development. |
| Sequence similarities | Contains 1 Arf-GAP domain. |
| Caution | Was originally (Ref.1) termed ARFGAP1. |
| Sequence caution | The sequence BAA92076.1 differs from that shown. Reason: Erroneous initiation. The sequence BAB14236.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 516 | 516 | ADP-ribosylation factor GTPase-activating protein 3 | PRO_0000074193 | |||||||||||||||||||||||||||||
Regions | |||||||||||||||||||||||||||||||||
| Domain | 10 – 126 | 117 | Arf-GAP | ||||||||||||||||||||||||||||||
| Zinc finger | 25 – 48 | 24 | C4-type | ||||||||||||||||||||||||||||||
| Coiled coil | 243 – 263 | 21 | Potential | ||||||||||||||||||||||||||||||
| Compositional bias | 348 – 377 | 30 | Ser-rich | ||||||||||||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||||||||||||
| Modified residue | 143 | 1 | Phosphoserine Ref.9 | ||||||||||||||||||||||||||||||
| Modified residue | 223 | 1 | N6-acetyllysine Ref.16 | ||||||||||||||||||||||||||||||
| Modified residue | 228 | 1 | N6-acetyllysine Ref.16 | ||||||||||||||||||||||||||||||
| Modified residue | 229 | 1 | N6-acetyllysine Ref.16 | ||||||||||||||||||||||||||||||
| Modified residue | 270 | 1 | Phosphoserine Ref.12 | ||||||||||||||||||||||||||||||
| Modified residue | 331 | 1 | Phosphoserine Ref.10 Ref.13 | ||||||||||||||||||||||||||||||
| Modified residue | 370 | 1 | Phosphoserine Ref.15 | ||||||||||||||||||||||||||||||
| Modified residue | 428 | 1 | Phosphoserine Ref.14 | ||||||||||||||||||||||||||||||
| Modified residue | 453 | 1 | Phosphoserine Ref.13 Ref.15 | ||||||||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||||||||
| Natural variant | 231 | 1 | S → G. Corresponds to variant rs9607957 [ dbSNP | Ensembl ]. | VAR_055523 | |||||||||||||||||||||||||||||
| Natural variant | 290 | 1 | E → G in a breast cancer sample; somatic mutation. Ref.19 | VAR_036177 | |||||||||||||||||||||||||||||
| Natural variant | 355 | 1 | S → R. Ref.3 Ref.5 Ref.7 Corresponds to variant rs1018448 [ dbSNP | Ensembl ]. | VAR_013447 | |||||||||||||||||||||||||||||
| Natural variant | 370 | 1 | S → G. Corresponds to variant rs16986123 [ dbSNP | Ensembl ]. | VAR_055524 | |||||||||||||||||||||||||||||
| Natural variant | 468 | 1 | Q → H. Corresponds to variant rs35498349 [ dbSNP | Ensembl ]. | VAR_055525 | |||||||||||||||||||||||||||||
| Natural variant | 482 | 1 | A → T. Corresponds to variant rs36003980 [ dbSNP | Ensembl ]. | VAR_055526 | |||||||||||||||||||||||||||||
| Natural variant | 490 | 1 | Q → R. Corresponds to variant rs11551619 [ dbSNP | Ensembl ]. | VAR_055527 | |||||||||||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||||||||||
| Sequence conflict | 339 | 1 | K → R in BAA92076. Ref.7 | ||||||||||||||||||||||||||||||
| Sequence conflict | 401 | 1 | T → A in BAA92076. Ref.7 | ||||||||||||||||||||||||||||||
| Sequence conflict | 458 | 1 | S → P in BAB14236. Ref.7 | ||||||||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||||||||
| Helix | 6 – 18 | 13 | |||||||||||||||||||||||||||||||
| Turn | 20 – 22 | 3 | |||||||||||||||||||||||||||||||
| Beta strand | 26 – 28 | 3 | |||||||||||||||||||||||||||||||
| Turn | 38 – 41 | 4 | |||||||||||||||||||||||||||||||
| Helix | 46 – 55 | 10 | |||||||||||||||||||||||||||||||
| Turn | 57 – 59 | 3 | |||||||||||||||||||||||||||||||
| Beta strand | 65 – 67 | 3 | |||||||||||||||||||||||||||||||
| Helix | 73 – 80 | 8 | |||||||||||||||||||||||||||||||
| Helix | 84 – 94 | 11 | |||||||||||||||||||||||||||||||
| Helix | 101 – 104 | 4 | |||||||||||||||||||||||||||||||
| Helix | 108 – 126 | 19 | |||||||||||||||||||||||||||||||
| Beta strand | 129 – 131 | 3 | |||||||||||||||||||||||||||||||
Sequences
| ||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "Characterization, chromosomal assignment, and tissue expression of a novel human gene belonging to the ARF GAP family." Zhang C., Yu Y., Zhang S., Liu M., Xing G., Wei H., Bi J., Liu X., Zhou G., Dong C., Hu Z., Zhang Y., Luo L., Wu C., Zhao S., He F. Genomics 63:400-408(2000) [PubMed: 10704287] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY. Tissue: Placenta. |
| [2] | "Reevaluating human gene annotation: a second-generation analysis of chromosome 22." Collins J.E., Goward M.E., Cole C.G., Smink L.J., Huckle E.J., Knowles S., Bye J.M., Beare D.M., Dunham I. Genome Res. 13:27-36(2003) [PubMed: 12529303] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. |
| [3] | "A genome annotation-driven approach to cloning the human ORFeome." Collins J.E., Wright C.L., Edwards C.A., Davis M.P., Grinham J.A., Cole C.G., Goward M.E., Aguado B., Mallya M., Mokrab Y., Huckle E.J., Beare D.M., Dunham I. Genome Biol. 5:R84.1-R84.11(2004) [PubMed: 15461802] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT ARG-355. |
| [4] | "The DNA sequence of human chromosome 22." Dunham I., Hunt A.R., Collins J.E., Bruskiewich R., Beare D.M., Clamp M., Smink L.J., Ainscough R., Almeida J.P., Babbage A.K., Bagguley C., Bailey J., Barlow K.F., Bates K.N., Beasley O.P., Bird C.P., Blakey S.E., Bridgeman A.M. Wright H.Nature 402:489-495(1999) [PubMed: 10591208] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], VARIANT ARG-355. Tissue: Lung. |
| [6] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 44-516. Tissue: Testis. |
| [7] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 118-516, VARIANT ARG-355. Tissue: Placenta. |
| [8] | "Functional characterization of novel human ARFGAP3." Liu X., Zhang C., Xing G., Chen Q., He F. FEBS Lett. 490:79-83(2001) [PubMed: 11172815] [Abstract] Cited for: FUNCTION, ENZYME REGULATION. |
| [9] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed: 17081983] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-143, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra." Yu L.-R., Zhu Z., Chan K.C., Issaq H.J., Dimitrov D.S., Veenstra T.D. J. Proteome Res. 6:4150-4162(2007) [PubMed: 17924679] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-331, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "Two human ARFGAPs associated with COP-I-coated vesicles." Frigerio G., Grimsey N., Dale M., Majoul I., Duden R. Traffic 8:1644-1655(2007) [PubMed: 17760859] [Abstract] Cited for: SUBCELLULAR LOCATION. |
| [12] | "Automated phosphoproteome analysis for cultured cancer cells by two-dimensional nanoLC-MS using a calcined titania/C18 biphasic column." Imami K., Sugiyama N., Kyono Y., Tomita M., Ishihama Y. Anal. Sci. 24:161-166(2008) [PubMed: 18187866] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-270, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [13] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-331 AND SER-453, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [14] | "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach." Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S. Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-428, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [15] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-370 AND SER-453, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [16] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed: 19608861] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-223; LYS-228 AND LYS-229, MASS SPECTROMETRY. |
| [17] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed: 21269460] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [18] | "Solution structure of the ARFGAP domain of ADP-ribosylation factor GTPase-activating protein 3 (ARFGAP 3)." RIKEN structural genomics initiative (RSGI) Submitted (NOV-2005) to the PDB data bank Cited for: STRUCTURE BY NMR OF 1-136. |
| [19] | "The consensus coding sequences of human breast and colorectal cancers." Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V. Velculescu V.E.Science 314:268-274(2006) [PubMed: 16959974] [Abstract] Cited for: VARIANT [LARGE SCALE ANALYSIS] GLY-290. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AF111847 mRNA. Translation: AAF40310.1. AL159143 mRNA. Translation: CAB76901.1. CR456382 mRNA. Translation: CAG30268.1. AL049757, AL049758 Genomic DNA. Translation: CAI21510.1. AL049758, AL049757 Genomic DNA. Translation: CAI20950.1. BC005122 mRNA. Translation: AAH05122.1. AL137598 mRNA. Translation: CAB70834.1. AK002083 mRNA. Translation: BAA92076.1. Different initiation. AK022768 mRNA. Translation: BAB14236.1. Different initiation. | ||||||||||||
| IPI | IPI00299263. | ||||||||||||
| PIR | T46305. | ||||||||||||
| RefSeq | NP_001135765.1. NM_001142293.1. NP_055385.3. NM_014570.4. | ||||||||||||
| UniGene | Hs.685225. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | Q9NP61. | ||||||||||||
| SMR | Q9NP61. Positions 3-136. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | Q9NP61. 3 interactions. | ||||||||||||
| STRING | Q9NP61. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q9NP61. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 21263420. | ||||||||||||
Proteomic databases | |||||||||||||
| PeptideAtlas | Q9NP61. | ||||||||||||
| PRIDE | Q9NP61. | ||||||||||||
Protocols and materials databases | |||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000263245; ENSP00000263245; ENSG00000242247. | ||||||||||||
| GeneID | 26286. | ||||||||||||
| KEGG | hsa:26286. | ||||||||||||
| UCSC | uc003bdd.1. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 26286. | ||||||||||||
| GeneCards | GC22M043192. | ||||||||||||
| H-InvDB | HIX0016547. | ||||||||||||
| HGNC | HGNC:661. ARFGAP3. | ||||||||||||
| HPA | HPA000638. | ||||||||||||
| MIM | 612439. gene. | ||||||||||||
| neXtProt | NX_Q9NP61. | ||||||||||||
| PharmGKB | PA35024. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | prNOG16306. | ||||||||||||
| GeneTree | ENSGT00390000005436. | ||||||||||||
| HOVERGEN | HBG050563. | ||||||||||||
| InParanoid | Q9NP61. | ||||||||||||
| OrthoDB | EOG4N8R4S. | ||||||||||||
| PhylomeDB | Q9NP61. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | Q9NP61. | ||||||||||||
| Bgee | Q9NP61. | ||||||||||||
| CleanEx | HS_ARFGAP1. HS_ARFGAP3. | ||||||||||||
| Genevestigator | Q9NP61. | ||||||||||||
| GermOnline | ENSG00000100262. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR001164. ArfGAP. [Graphical view] | ||||||||||||
| KO | K12493. | ||||||||||||
| Pfam | PF01412. ArfGap. 1 hit. [Graphical view] | ||||||||||||
| PRINTS | PR00405. REVINTRACTNG. | ||||||||||||
| SMART | SM00105. ArfGap. 1 hit. [Graphical view] | ||||||||||||
| SUPFAM | SSF57863. ArfGAP. 1 hit. | ||||||||||||
| PROSITE | PS50115. ARFGAP. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| NextBio | 48617. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | ARFG3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9NP61 Secondary accession number(s): Q9BSC6 Q9Y4V4 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 22 Human chromosome 22: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with