Q9NNX6 (CD209_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 118.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: CD209 antigen Alternative name(s): C-type lectin domain family 4 member L Dendritic cell-specific ICAM-3-grabbing non-integrin 1 Short name=DC-SIGN Short name=DC-SIGN1 CD_antigen=CD209 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 404 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Pathogen-recognition receptor expressed on the surface of immature dendritic cells (DCs) and involved in initiation of primary immune response. Thought to mediate the endocytosis of pathogens which are subsequently degraded in lysosomal compartments. The receptor returns to the cell membrane surface and the pathogen-derived antigens are presented to resting T-cells via MHC class II proteins to initiate the adaptive immune response. Probably recognizes in a calcium-dependent manner high mannose N-linked oligosaccharides in a variety of pathogen antigens, including HIV-1 gp120, HIV-2 gp120, SIV gp120, ebolavirus glycoproteins, cytomegalovirus gB, HCV E2, dengue virus gE, Leishmania pifanoi LPG, Lewis-x antigen in Helicobacter pylori LPS, mannose in Klebsiella pneumonae LPS, di-mannose and tri-mannose in Mycobacterium tuberculosis ManLAM and Lewis-x antigen in Schistosoma mansoni SEA. Ref.9 Ref.10 Ref.14 Ref.15 Ref.17 Ref.18 On DCs it is a high affinity receptor for ICAM2 and ICAM3 by binding to mannose-like carbohydrates. May act as a DC rolling receptor that mediates transendothelial migration of DC presursors from blood to tissues by binding endothelial ICAM2. Seems to regulate DC-induced T-cell proliferation by binding to ICAM3 on T-cells in the immunological synapse formed between DC and T-cells. Ref.9 Ref.10 Ref.14 Ref.15 Ref.17 Ref.18 |
| Subunit structure | Homotetramer. Binds to many viral surface glycoproteins such as HIV-1 gp120, HIV-2 gp120, SIV gp120, ebolavirus envelope glycoproteins, cytomegalovirus gB, HCV E2 and dengue virus major envelope protein E. Interacts with C1QBP; the interaction is indicative for a C1q:C1QBP:CD209 signaling complex. Ref.1 Ref.9 Ref.10 Ref.11 Ref.12 Ref.13 Ref.16 Ref.21 Ref.23 |
| Subcellular location | Isoform 1: Cell membrane; Single-pass type II membrane protein Probable Ref.1. Isoform 2: Cell membrane; Single-pass type II membrane protein Probable Ref.1. Isoform 3: Cell membrane; Single-pass type II membrane protein Probable Ref.1. Isoform 4: Cell membrane; Single-pass type II membrane protein Probable Ref.1. Isoform 5: Cell membrane; Single-pass type II membrane protein Probable Ref.1. Isoform 6: Secreted Probable Ref.1. Isoform 7: Secreted Probable Ref.1. Isoform 8: Secreted Probable Ref.1. Isoform 9: Secreted Probable Ref.1. Isoform 10: Secreted Probable Ref.1. |
| Tissue specificity | Predominantly expressed in dendritic cells and in DC-residing tissues. Also found in placental macrophages, endothelial cells of placental vascular channels, peripheral blood mononuclear cells, and THP-1 monocytes. Ref.3 Ref.4 |
| Domain | The tandem repeat domain, also called neck domain, mediates oligomerization. |
| Polymorphism | Genetic variations in CD209 determine Mycobacterium tuberculosis susceptibility [MIM:607948]. Genetic variations in CD209 may influence susceptibility or resistance to dengue virus infection, as well as disease progression and severity [MIM:614371]. A promoter polymorphism in the CD209 gene is associated with protection from dengue fever, but not dengue hemorrhagic fever. |
| Miscellaneous | In vitro, is a receptor for HIV-1 and transmits HIV-1 either in trans without DC infection, or in cis following a DC infection to permissive T-cells to induce a robust infection. Bound HIV-1 remains infectious over a prolonged period of time and it is proposed that bound HIV-1 is not degraded but protected in non-lysosomal acidic organelles within the DCs close to the cell membrane thus contributing to the HIV-1 infectious potential during transport by DCs from the periphery to lymphoid organs. |
| Sequence similarities | Contains 1 C-type lectin domain. |
| Sequence caution | The sequence AAK91858.1 differs from that shown. Reason: Aberrant splicing. |
Ontologies
Alternative products
| This entry describes 12 isoforms produced by alternative splicing. [Align] [Select] Note: Additional isoforms seem to exist. Several splicing events may be used independently in a modular way. Deletion of the transmembrane domain encoding exon through alternative splicing produces soluble isoforms. | ||||||
| Isoform 1 (identifier: Q9NNX6-1) Also known as: mDC-SIGN1A type I; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q9NNX6-2) Also known as: mDC-SIGN1A type II; The sequence of this isoform differs from the canonical sequence as follows: 301-306: Missing. | ||||||
| Isoform 3 (identifier: Q9NNX6-3) Also known as: mDC-SIGN1A type III; The sequence of this isoform differs from the canonical sequence as follows: 143-235: LQEIYQELTW...VGELPEKSKQ → L | ||||||
| Isoform 4 (identifier: Q9NNX6-4) Also known as: mDC-SIGN1A type IV; The sequence of this isoform differs from the canonical sequence as follows: 74-309: Missing. | ||||||
| Isoform 5 (identifier: Q9NNX6-5) Also known as: mDC-SIGN1B type I; The sequence of this isoform differs from the canonical sequence as follows: 1-15: MSDSKEPRLQQLGLL → MASACPGSDFTSIHS | ||||||
| Isoform 6 (identifier: Q9NNX6-6) Also known as: sDC-SIGN1A type I; The sequence of this isoform differs from the canonical sequence as follows: 36-59: Missing. | ||||||
| Isoform 7 (identifier: Q9NNX6-7) Also known as: sDC-SIGN1A type II; The sequence of this isoform differs from the canonical sequence as follows: 16-59: Missing. | ||||||
| Isoform 8 (identifier: Q9NNX6-8) Also known as: sDC-SIGN1A type III; The sequence of this isoform differs from the canonical sequence as follows: 16-59: Missing. 142-233: Missing. | ||||||
| Isoform 9 (identifier: Q9NNX6-9) Also known as: sDC-SIGN1A type IV; The sequence of this isoform differs from the canonical sequence as follows: 30-34: GYKSL → RNQKC 35-404: Missing. | ||||||
| Note: May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay. | ||||||
| Isoform 10 (identifier: Q9NNX6-10) Also known as: sDC-SIGN1B type I; The sequence of this isoform differs from the canonical sequence as follows: 1-15: MSDSKEPRLQQLGLL → MASACPGSDFTSIHS 36-59: Missing. | ||||||
| Isoform 11 (identifier: Q9NNX6-11) Also known as: sDC-SIGN1B type II; The sequence of this isoform differs from the canonical sequence as follows: 1-15: MSDSKEPRLQQLGLL → MASACPGSDFTSIHS 36-59: Missing. 191-236: Missing. | ||||||
| Isoform 12 (identifier: Q9NNX6-12) Also known as: sDC-SIGN1B type III; The sequence of this isoform differs from the canonical sequence as follows: 1-15: MSDSKEPRLQQLGLL → MASACPGSDFTSIHS 36-59: Missing. 301-321: NFLQLQSSRSNRFTWMGLSDL → LQAVLEQRRAQQRWGGRLRGI 322-404: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||||||||||||
Molecule processing | ||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 404 | 404 | CD209 antigen | PRO_0000046595 | ||||||||||||||||||||||||||
Regions | ||||||||||||||||||||||||||||||
| Topological domain | 1 – 37 | 37 | Cytoplasmic Probable | |||||||||||||||||||||||||||
| Transmembrane | 38 – 58 | 21 | Helical; Signal-anchor for type II membrane protein; Probable | |||||||||||||||||||||||||||
| Topological domain | 59 – 404 | 346 | Extracellular Probable | |||||||||||||||||||||||||||
| Repeat | 96 – 118 | 23 | 1 | |||||||||||||||||||||||||||
| Repeat | 119 – 141 | 23 | 2 | |||||||||||||||||||||||||||
| Repeat | 142 – 164 | 23 | 3 | |||||||||||||||||||||||||||
| Repeat | 165 – 187 | 23 | 4 | |||||||||||||||||||||||||||
| Repeat | 188 – 210 | 23 | 5 | |||||||||||||||||||||||||||
| Repeat | 211 – 233 | 23 | 6 | |||||||||||||||||||||||||||
| Repeat | 234 – 257 | 24 | 7 | |||||||||||||||||||||||||||
| Domain | 263 – 378 | 116 | C-type lectin | |||||||||||||||||||||||||||
| Region | 96 – 257 | 162 | 7 X approximate tandem repeats | |||||||||||||||||||||||||||
| Motif | 14 – 15 | 2 | Endocytosis signal | |||||||||||||||||||||||||||
| Motif | 16 – 18 | 3 | Endocytosis signal Potential | |||||||||||||||||||||||||||
| Motif | 31 – 34 | 4 | Endocytosis signal Potential | |||||||||||||||||||||||||||
Sites | ||||||||||||||||||||||||||||||
| Metal binding | 347 | 1 | Calcium | |||||||||||||||||||||||||||
| Metal binding | 349 | 1 | Calcium | |||||||||||||||||||||||||||
| Metal binding | 351 | 1 | Calcium; via carbonyl oxygen | |||||||||||||||||||||||||||
| Metal binding | 354 | 1 | Calcium | |||||||||||||||||||||||||||
| Metal binding | 365 | 1 | Calcium | |||||||||||||||||||||||||||
| Metal binding | 366 | 1 | Calcium | |||||||||||||||||||||||||||
Amino acid modifications | ||||||||||||||||||||||||||||||
| Glycosylation | 80 | 1 | N-linked (GlcNAc...) Potential | |||||||||||||||||||||||||||
| Disulfide bond | 256 ↔ 267 | |||||||||||||||||||||||||||||
| Disulfide bond | 284 ↔ 377 | |||||||||||||||||||||||||||||
| Disulfide bond | 356 ↔ 369 | |||||||||||||||||||||||||||||
Natural variations | ||||||||||||||||||||||||||||||
| Alternative sequence | 1 – 15 | 15 | MSDSK…QLGLL → MASACPGSDFTSIHS in isoform 5, isoform 10, isoform 11 and isoform 12. | VSP_010037 | ||||||||||||||||||||||||||
| Alternative sequence | 16 – 59 | 44 | Missing in isoform 7 and isoform 8. | VSP_010038 | ||||||||||||||||||||||||||
| Alternative sequence | 30 – 34 | 5 | GYKSL → RNQKC in isoform 9. | VSP_010039 | ||||||||||||||||||||||||||
| Alternative sequence | 35 – 404 | 370 | Missing in isoform 9. | VSP_010040 | ||||||||||||||||||||||||||
| Alternative sequence | 36 – 59 | 24 | Missing in isoform 6, isoform 10, isoform 11 and isoform 12. | VSP_010041 | ||||||||||||||||||||||||||
| Alternative sequence | 74 – 309 | 236 | Missing in isoform 4. | VSP_010042 | ||||||||||||||||||||||||||
| Alternative sequence | 142 – 233 | 92 | Missing in isoform 8. | VSP_010043 | ||||||||||||||||||||||||||
| Alternative sequence | 143 – 235 | 93 | LQEIY…EKSKQ → L in isoform 3. | VSP_010044 | ||||||||||||||||||||||||||
| Alternative sequence | 191 – 236 | 46 | Missing in isoform 11. | VSP_010047 | ||||||||||||||||||||||||||
| Alternative sequence | 301 – 321 | 21 | NFLQL…GLSDL → LQAVLEQRRAQQRWGGRLRG I in isoform 12. | VSP_010048 | ||||||||||||||||||||||||||
| Alternative sequence | 301 – 306 | 6 | Missing in isoform 2. | VSP_010049 | ||||||||||||||||||||||||||
| Alternative sequence | 322 – 404 | 83 | Missing in isoform 12. | VSP_010050 | ||||||||||||||||||||||||||
| Natural variant | 168 | 1 | E → D. Corresponds to variant rs11465377 [ dbSNP | Ensembl ]. | VAR_050104 | ||||||||||||||||||||||||||
| Natural variant | 214 | 1 | E → D. Corresponds to variant rs11465377 [ dbSNP | Ensembl ]. | VAR_036689 | ||||||||||||||||||||||||||
| Natural variant | 242 | 1 | L → V. Corresponds to variant rs11465380 [ dbSNP | Ensembl ]. | VAR_036690 | ||||||||||||||||||||||||||
| Natural variant | 382 | 1 | A → S. Corresponds to variant rs11465393 [ dbSNP | Ensembl ]. | VAR_050105 | ||||||||||||||||||||||||||
Experimental info | ||||||||||||||||||||||||||||||
| Mutagenesis | 14 – 15 | 2 | LL → AA: Loss of antigen internalization by endocytosis. Ref.14 | |||||||||||||||||||||||||||
| Mutagenesis | 320 | 1 | D → A: Loss of binding to ICAM3 and HIV-1 gp120. Ref.13 Ref.14 | |||||||||||||||||||||||||||
| Mutagenesis | 324 | 1 | E → A: Loss of binding to ICAM3 and HIV-1 gp120. Ref.13 Ref.14 | |||||||||||||||||||||||||||
| Mutagenesis | 347 | 1 | E → Q: Loss of binding to ICAM3 and HIV-1 gp120. Ref.13 Ref.14 | |||||||||||||||||||||||||||
| Mutagenesis | 349 | 1 | N → D: Loss of binding to ICAM3 and HIV-1 gp120. Ref.13 Ref.14 | |||||||||||||||||||||||||||
| Mutagenesis | 350 | 1 | N → A: Loss of binding to ICAM3 and HIV-1 gp120. Ref.13 Ref.14 | |||||||||||||||||||||||||||
| Mutagenesis | 355 | 1 | D → A: Loss of binding to ICAM3 and HIV-1 gp120. Ref.13 Ref.14 | |||||||||||||||||||||||||||
| Mutagenesis | 365 | 1 | N → D: Loss of binding to ICAM3 and HIV-1 gp120. Ref.13 Ref.14 | |||||||||||||||||||||||||||
| Mutagenesis | 366 | 1 | D → A: Loss of binding to ICAM3 and HIV-1 gp120. Ref.13 Ref.14 | |||||||||||||||||||||||||||
Secondary structure | ||||||||||||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||||||||||||
| Beta strand | 261 – 263 | 3 | ||||||||||||||||||||||||||||
| Beta strand | 266 – 270 | 5 | ||||||||||||||||||||||||||||
| Helix | 277 – 286 | 10 | ||||||||||||||||||||||||||||
| Helix | 297 – 310 | 14 | ||||||||||||||||||||||||||||
| Beta strand | 314 – 323 | 10 | ||||||||||||||||||||||||||||
| Beta strand | 326 – 329 | 4 | ||||||||||||||||||||||||||||
| Helix | 337 – 342 | 6 | ||||||||||||||||||||||||||||
| Beta strand | 356 – 360 | 5 | ||||||||||||||||||||||||||||
| Beta strand | 363 – 367 | 5 | ||||||||||||||||||||||||||||
| Beta strand | 373 – 380 | 8 | ||||||||||||||||||||||||||||
| Turn | 381 – 383 | 3 | ||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Sequence and expression of a membrane-associated C-type lectin that exhibits CD4-independent binding of human immunodeficiency virus envelope glycoprotein gp 120." Curtis B.M., Scharnowske S., Watson A.J. Proc. Natl. Acad. Sci. U.S.A. 89:8356-8360(1992) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), SUBCELLULAR LOCATION, INTERACTION WITH HIV-1 GP120. Tissue: Placenta. |
| [2] | "DC-SIGN, a related gene, DC-SIGNR, and CD23 form a cluster on 19p13." Soilleux E.J., Barten R., Trowsdale J. J. Immunol. 165:2937-2942(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM 1). |
| [3] | "A dendritic cell-specific intercellular adhesion molecule 3-grabbing nonintegrin (DC-SIGN)-related protein is highly expressed on human liver sinusoidal endothelial cells and promotes HIV-1 infection." Bashirova A.A., Geijtenbeek T.B.H., van Duijnhoven G.C.F., van Vliet S.J., Eilering J.B.G., Martin M.P., Wu L., Martin T.D., Viebig N., Knolle P.A., Kewalramani V.N., van Kooyk Y., Carrington M. J. Exp. Med. 193:671-678(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), TISSUE SPECIFICITY. |
| [4] | "Extensive repertoire of membrane-bound and soluble dendritic cell-specific ICAM-3-grabbing nonintegrin 1 (DC-SIGN1) and DC-SIGN2 isoforms. Inter-individual variation in expression of DC-SIGN transcripts." Mummidi S., Catano G., Lam L., Hoefle A., Telles V., Begum K., Jimenez F., Ahuja S.S., Ahuja S.K. J. Biol. Chem. 276:33196-33212(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2; 3; 4; 5; 6; 7; 8; 9; 10; 11 AND 12), ALTERNATIVE SPLICING, TISSUE SPECIFICITY. |
| [5] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Uterus. |
| [6] | "The DNA sequence and biology of human chromosome 19." Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J., Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M., Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E., Caenepeel S., Carrano A.V. Lucas S.M.Nature 428:529-535(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [8] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 10). |
| [9] | "DC-SIGN, a dendritic cell-specific HIV-1-binding protein that enhances trans-infection of T cells." Geijtenbeek T.B.H., Kwon D.S., Torensma R., van Vliet S.J., van Duijnhoven G.C.F., Middel J., Cornelissen I.L., Nottet H.S., Kewalramani V.N., Littman D.R., Figdor C.G., van Kooyk Y. Cell 100:587-597(2000) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH ICAM3. |
| [10] | "DC-SIGN-ICAM-2 interaction mediates dendritic cell trafficking." Geijtenbeek T.B.H., Krooshoop D.J., Bleijs D.A., van Vliet S.J., van Duijnhoven G.C.F., Grabovsky V., Alon R., Figdor C.G., van Kooyk Y. Nat. Immunol. 1:353-357(2000) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH ICAM2. |
| [11] | "A novel mechanism of carbohydrate recognition by the C-type lectins DC-SIGN and DC-SIGNR. Subunit organization and binding to multivalent ligands." Mitchell D.A., Fadden A.J., Drickamer K. J. Biol. Chem. 276:28939-28945(2001) [PubMed] [Europe PMC] [Abstract] Cited for: SUBUNIT, LIGAND-BINDING. |
| [12] | "Human cytomegalovirus binding to DC-SIGN is required for dendritic cell infection and target cell trans-infection." Halary F., Amara A., Lortat-Jacob H., Messerle M., Delaunay T., Houles C., Fieschi F., Arenzana-Seisdedos F., Moreau J.-F., Dechanet-Merville J. Immunity 17:653-664(2002) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH CYTOMEGALOVIRUS GLYCOPROTEIN B (GB). |
| [13] | "Identification of different binding sites in the dendritic cell-specific receptor DC-SIGN for intercellular adhesion molecule 3 and HIV-1." Geijtenbeek T.B.H., van Duijnhoven G.C.F., van Vliet S.J., Krieger E., Vriend G., Figdor C.G., van Kooyk Y. J. Biol. Chem. 277:11314-11320(2002) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH ICAM 3 AND HIV-1 GP120, MUTAGENESIS OF ASP-320; GLU-324; GLU-347; ASN-349; ASN-350; ASP-355; ASN-365 AND ASP-366. |
| [14] | "The dendritic cell-specific adhesion receptor DC-SIGN internalizes antigen for presentation to T cells." Engering A., Geijtenbeek T.B.H., van Vliet S.J., Wijers M., van Liempt E., Demaurex N., Lanzavecchia A., Fransen J., Figdor C.G., Piguet V., van Kooyk Y. J. Immunol. 168:2118-2126(2002) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, MUTAGENESIS OF 14-LEU-LEU-15. |
| [15] | "DC-SIGN-mediated internalization of HIV is required for trans-enhancement of T cell infection." Kwon D.S., Gregorio G., Bitton N., Hendrickson W.A., Littman D.R. Immunity 16:135-144(2002) [PubMed] [Europe PMC] [Abstract] Cited for: ROLE IN HIV-1 INFECTION. |
| [16] | "Differential N-linked glycosylation of human immunodeficiency virus and Ebola virus envelope glycoproteins modulates interactions with DC-SIGN and DC-SIGNR." Lin G., Simmons G., Poehlmann S., Baribaud F., Ni H., Leslie G.J., Haggarty B.S., Bates P., Weissman D., Hoxie J.A., Doms R.W. J. Virol. 77:1337-1346(2003) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH HIV-1 GP120; HIV-2 GP120; SIV GP120 AND EBOLA GLYCOPROTEINS. |
| [17] | "Inhibition of human immunodeficiency virus type 1 Env-mediated fusion by DC-SIGN." Nobile C., Moris A., Porrot F., Sol-Foulon N., Schwartz O. J. Virol. 77:5313-5323(2003) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION IN HIV-1 INFECTION. |
| [18] | "Carbohydrate profiling identifies new pathogens that interact with dendritic cell-specific ICAM-3-grabbing nonintegrin on dendritic cells." Appelmelk B.J., van Die I., van Vliet S.J., Vandenbroucke-Grauls C.M., Geijtenbeek T.B.H., van Kooyk Y. J. Immunol. 170:1635-1639(2003) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [19] | "DC-SIGN: escape mechanism for pathogens." van Kooyk Y., Geijtenbeek T.B.H. Nat. Rev. Immunol. 3:697-709(2003) [PubMed] [Europe PMC] [Abstract] Cited for: REVIEW ON ROLE IN HIV-1 INFECTION AND ON PATHOGEN BINDING. |
| [20] | "The role of dendritic cell C-type lectin receptors in HIV pathogenesis." Turville S., Wilkinson J., Cameron P., Dable J., Cunningham A.L. J. Leukoc. Biol. 74:710-718(2003) [PubMed] [Europe PMC] [Abstract] Cited for: REVIEW ON ROLE IN HIV-1 INFECTION. |
| [21] | "L-SIGN (CD209L) and DC-SIGN (CD209) mediate transinfection of liver cells by hepatitis C virus." Cormier E.G., Durso R.J., Tsamis F., Boussemart L., Manix C., Olson W.C., Gardner J.P., Dragic T. Proc. Natl. Acad. Sci. U.S.A. 101:14067-14072(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH HCV E2 GLYCOPROTEIN. |
| [22] | "A variant in the CD209 promoter is associated with severity of dengue disease." Sakuntabhai A., Turbpaiboon C., Casademont I., Chuansumrit A., Lowhnoo T., Kajaste-Rudnitski A., Kalayanarooj S.M., Tangnararatchakit K., Tangthawornchaikul N., Vasanawathana S., Chaiyaratana W., Yenchitsomanus P.T., Suriyaphol P., Avirutnan P., Chokephaibulkit K., Matsuda F., Yoksan S., Jacob Y. Julier C.Nat. Genet. 37:507-513(2005) [PubMed] [Europe PMC] [Abstract] Cited for: POLYMORPHISM, INVOLVEMENT IN SUSCEPTIBILITY TO DENGUE VIRUS INFECTION. |
| [23] | "DC-SIGN, C1q, and gC1qR form a trimolecular receptor complex on the surface of monocyte-derived immature dendritic cells." Hosszu K.K., Valentino A., Vinayagasundaram U., Vinayagasundaram R., Joyce M.G., Ji Y., Peerschke E.I., Ghebrehiwet B. Blood 120:1228-1236(2012) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH C1QBP. |
| [24] | "Structural basis for selective recognition of oligosaccharides by DC-SIGN and DC-SIGNR." Feinberg H., Mitchell D.A., Drickamer K., Weis W.I. Science 294:2163-2166(2001) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.5 ANGSTROMS) OF 254-382 IN COMPLEX WITH GLCNAC(2)-MAN(3) PENTASACCHARIDE. |
| [25] | "Promoter variation in the DC-SIGN-encoding gene CD209 is associated with tuberculosis." Barreiro L.B., Neyrolles O., Babb C.L., Tailleux L., Quach H., McElreavey K., Helden P.D., Hoal E.G., Gicquel B., Quintana-Murci L. PLoS Med. 3:230-235(2006) [PubMed] [Europe PMC] [Abstract] Cited for: INVOLVEMENT IN MYCOBACTERIUM TUBERCULOSIS SUSCEPTIBILITY. |
| + | Additional computationally mapped references. |
Web resources
| Wikipedia DC-SIGN entry |
| Functional Glycomics Gateway - Glycan Binding DC-SIGN |
Cross-references
Sequence databases | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| EMBL GenBank DDBJ | M98457 mRNA. Translation: AAF77072.1. AF209479 Genomic DNA. Translation: AAG13814.1. AF290886 mRNA. Translation: AAK20997.1. AY042221 mRNA. Translation: AAK91846.1. AY042222 mRNA. Translation: AAK91847.1. AY042223 mRNA. Translation: AAK91848.1. AY042224 mRNA. Translation: AAK91849.1. AY042225 mRNA. Translation: AAK91850.1. AY042226 mRNA. Translation: AAK91851.1. AY042227 mRNA. Translation: AAK91852.1. AY042228 mRNA. Translation: AAK91853.1. AY042229 mRNA. Translation: AAK91854.1. AY042230 mRNA. Translation: AAK91855.1. AY042231 mRNA. Translation: AAK91856.1. AY042232 mRNA. Translation: AAK91857.1. AY042233 mRNA. Translation: AAK91858.1. Sequence problems. AK293089 mRNA. Translation: BAF85778.1. AC008763 Genomic DNA. No translation available. AC008812 Genomic DNA. No translation available. CH471139 Genomic DNA. Translation: EAW68991.1. CH471139 Genomic DNA. Translation: EAW68993.1. CH471139 Genomic DNA. Translation: EAW68998.1. BC110615 mRNA. Translation: AAI10616.1. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IPI | IPI00045017. IPI00045033. IPI00290006. IPI00290007. IPI00382673. IPI00382675. IPI00382677. IPI00410201. IPI00410204. IPI00410289. IPI00410294. IPI00410295. IPI00872805. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PIR | A46274. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| RefSeq | NP_001138365.1. NM_001144893.1. NP_001138366.1. NM_001144894.1. NP_001138367.1. NM_001144895.1. NP_001138368.1. NM_001144896.1. NP_001138369.1. NM_001144897.1. NP_066978.1. NM_021155.3. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| UniGene | Hs.278694. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
3D structure databases | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | Q9NNX6. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
PTM databases | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PhosphoSite | Q9NNX6. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Polymorphism databases | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
| DMDM | 46396012. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
2D gel databases | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
| REPRODUCTION-2DPAGE | Q9NNX6. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Proteomic databases | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PaxDb | Q9NNX6. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PRIDE | Q9NNX6. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Genome annotation databases | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Ensembl | ENST00000204801; ENSP00000204801; ENSG00000090659. ENST00000301357; ENSP00000301357; ENSG00000090659. ENST00000315591; ENSP00000315407; ENSG00000090659. ENST00000315599; ENSP00000315477; ENSG00000090659. ENST00000354397; ENSP00000346373; ENSG00000090659. ENST00000394161; ENSP00000377716; ENSG00000090659. ENST00000601256; ENSP00000470658; ENSG00000090659. ENST00000601951; ENSP00000468827; ENSG00000090659. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GeneID | 30835. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| KEGG | hsa:30835. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| UCSC | uc002mhq.2. human. uc002mhr.2. human. uc002mhs.2. human. uc002mht.2. human. uc002mhu.2. human. uc002mhv.2. human. uc002mhx.2. human. uc010dvp.2. human. uc010dvq.2. human. uc010dvr.2. human. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Organism-specific databases | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
| CTD | 30835. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GeneCards | GC19M007804. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HGNC | HGNC:1641. CD209. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HPA | CAB032436. CAB033831. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MIM | 604672. gene+phenotype. 607948. phenotype. 614371. phenotype. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| neXtProt | NX_Q9NNX6. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PharmGKB | PA26199. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
| eggNOG | NOG311341. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HOVERGEN | HBG050992. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| KO | K06563. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| OMA | LAKFWIC. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| OrthoDB | EOG40K7ZZ. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PhylomeDB | Q9NNX6. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene expression databases | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ArrayExpress | Q9NNX6. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Bgee | Q9NNX6. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Genevestigator | Q9NNX6. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GermOnline | ENSG00000090659. Homo sapiens. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Family and domain databases | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Gene3D | 3.10.100.10. 1 hit. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| InterPro | IPR001304. C-type_lectin. IPR016186. C-type_lectin-like. IPR018378. C-type_lectin_CS. IPR016187. C-type_lectin_fold. [Graphical view] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Pfam | PF00059. Lectin_C. 1 hit. [Graphical view] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SMART | SM00034. CLECT. 1 hit. [Graphical view] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SUPFAM | SSF56436. C-type_lectin_fold. 1 hit. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PROSITE | PS00615. C_TYPE_LECTIN_1. 1 hit. PS50041. C_TYPE_LECTIN_2. 1 hit. [Graphical view] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Other | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ChEMBL | CHEMBL1795114. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| EvolutionaryTrace | Q9NNX6. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GenomeRNAi | 30835. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| NextBio | 52950. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Entry information
| Entry name | CD209_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q9NNX6 Secondary accession number(s): A8KAM4 Q96QQ8 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human cell differentiation molecules CD nomenclature of surface proteins of human leucocytes and list of entries |
| Human chromosome 19 Human chromosome 19: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
