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Q9N517 (Q9N517_CAEEL) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 85. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Protein LGC-42 EMBL CCD73017.1
Gene names
Name:lgc-42 EMBL CCD73017.1
ORF Names:Y39A3B.2 EMBL CCD73017.1
OrganismCaenorhabditis elegans
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length412 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subcellular location

Membrane; Multi-pass membrane protein By similarity RuleBase RU003585.

Sequence similarities

Belongs to the ligand-gated ion channel (TC 1.A.9) family. [View classification] RuleBase RU000687

Sequences

Sequence LengthMass (Da)Tools
Q9N517 [UniParc].

Last modified January 25, 2012. Version 3.
Checksum: 0E636EA8D9794F79

FASTA41247,919
        10         20         30         40         50         60 
MTSNRWLLFF LLLRITLANR DVFRLLQDKP MPRNGNPKAP LQVHFGFYVE SLGNFRATEM 

        70         80         90        100        110        120 
TYDMDMYLYM SWQDDSMRHN ETEHVLVNDK DILDKIWLPD LYFANARTAY FHKVTVHNFN 

       130        140        150        160        170        180 
MFISPQGTIS YGTRVTLNLA CNLDLKDYPL DYQTCYIKVI SYAHVKNEMN VSWFPNDPIR 

       190        200        210        220        230        240 
FNPEIDLPEF HIRALDKDYC NGVFLYTLTH NSSRVGEFSC LLGMLKLKRA IGFHLVQSYI 

       250        260        270        280        290        300 
PTGLIVAISW VSFWIDRRAV PARVSLSFTT LLTLSTQGNG IRYALPAVSY AKAIDYFYGV 

       310        320        330        340        350        360 
CMLFIFGVLL EFAAVNSYMR RANKYNHMAE KIQSAYGGKP IIADYDSDYE EGPTKYYGNL 

       370        380        390        400        410 
NKNSAHLMYK ALKFSRKALS IDKAARFAFP CVFAIFNVFY WLYYLREPPL MD

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References

[1]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
The C. elegans sequencing consortium
Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bristol N2.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FO081640 Genomic DNA. Translation: CCD73017.1.
RefSeqNP_497489.2. NM_065088.2.
UniGeneCel.9839.

3D structure databases

ProteinModelPortalQ9N517.
ModBaseSearch...

Protein-protein interaction databases

DIPDIP-26084N.
MINTMINT-1049455.

Proteomic databases

PRIDEQ9N517.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID189722.
KEGGcel:Y39A3B.2.

Organism-specific databases

CTD189722.

Family and domain databases

InterProIPR006028. GABAA_rcpt.
IPR006202. Neur_chan_lig-bd.
IPR006201. Neur_channel.
IPR006029. Neurotrans-gated_channel_TM.
IPR018000. Neurotransmitter_ion_chnl_CS.
[Graphical view]
Gene3DG3DSA:2.70.170.10. Neur_chan_lig_bd. 1 hit.
KOK05397.
PANTHERPTHR18945. Neur_channel. 1 hit.
PfamPF02931. Neur_chan_LBD. 1 hit.
PF02932. Neur_chan_memb. 1 hit.
[Graphical view]
PRINTSPR00253. GABAARECEPTR.
PR00252. NRIONCHANNEL.
SUPFAMSSF90112. Neu_channel_TM. 1 hit.
SSF63712. Neur_chan_LBD. 1 hit.
PROSITEPS00236. NEUROTR_ION_CHANNEL. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ9N517_CAEEL
AccessionPrimary (citable) accession number: Q9N517
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: January 25, 2012
Last modified: January 25, 2012
This is version 85 of the entry and version 3 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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