Unreviewed, UniProtKB/TrEMBL Q9N517 (Q9N517_CAEEL)

Names and origin

Protein names

Submitted name:
    Putative uncharacterized protein EMBL AAF60513.2

Gene names

Name:	lgc-42 WormPep Y39A3B.2 WormBase WBGene00021437
ORF Names:	Y39A3B.2 EMBL AAF60513.2

Organism

Caenorhabditis elegans [Complete proteome]

Taxonomic identifier

6239 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	382 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Subcellular location	Membrane; Multi-pass membrane protein By similarity. RuleBase RU003585V0
Sequence similarities	Belongs to the ligand-gated ionic channel (TC 1.A.9) family. [View classification] RuleBase RU000687V2

Ontologies

Keywords
Biological process	Ion transport Transport
Cellular component	Cell junction Cell membrane Spearmint SPM018000 Membrane Postsynaptic cell membrane Spearmint SPM018000 Synapse
Domain	Transmembrane RuleBase RU003585V0 Spearmint SPM018000
Molecular function	Ionic channel RuleBase RU000687V2 Spearmint SPM018000
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	ion transport Inferred from electronic annotation. Source: InterPro
Cellular component	cell junction Inferred from electronic annotation. Source: UniProtKB-KW integral to membrane Inferred from electronic annotation. Source: InterPro postsynaptic membrane Inferred from electronic annotation. Source: InterPro
Molecular function	GABA-A receptor activity Inferred from electronic annotation. Source: InterPro extracellular ligand-gated ion channel activity Inferred from electronic annotation. Source: InterPro neurotransmitter receptor activity Inferred from electronic annotation. Source: InterPro protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
nhr-2	Q10902	1	EBI-330336,EBI-312197

Sequences

	Sequence		Length	Mass (Da)
	Q9N517-1 [UniParc]. Last modified October 1, 2003. Version 2. Checksum: 4293FADEAD088702	FASTA	382	44,246
	10 20 30 40 50 60 MPRNGNPKAP LQVHFGFYVE SLGNFRATEM TYDMDMYLYM SWQDDSMRHN ETEHVLVNDK 70 80 90 100 110 120 DILDKIWLPD LYFANARTAY FHKVTVHNFN MFISPQGTIS YGTRVTLNLA CNLDLKDYPL 130 140 150 160 170 180 DYQTCYIKVI SYAHVKNEMN VSWFPNDPIR FNPEIDLPEF HIRALDKDYC NGVFLYTLTH 190 200 210 220 230 240 NSSRVGEFSC LLGMLKLKRA IGFHLVQSYI PTGLIVAISW VSFWIDRRAV PARVSLSFTT 250 260 270 280 290 300 LLTLSTQGNG IRYALPAVSY AKAIDYFYGV CMLFIFGVLL EFAAVNSYMR RANKYNHMAE 310 320 330 340 350 360 KIQSAYGGKP IIADYDSDYE EGPTKYYGNL NKNSAHLMYK ALKFSRKALS IDKAARFAFP 370 380 CVFAIFNVFY WLYYLREPPL MD

References

[1]	"Genome sequence of the nematode C. elegans: a platform for investigating biology." The C. elegans sequencing consortium Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bristol N2.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AC006748 Genomic DNA. Translation: AAF60513.2.
RefSeq	NP_497489.2.
UniGene	Cel.9839
3D structure databases
HSSP	HSSP built from PDB template 1MOT based on UniProtKB P23415.
ModBase	Search...
Protein-protein interaction databases
DIP	DIP:26084N.
IntAct	Q9N517. 1 interaction.
Genome annotation databases
Ensembl	Y39A3B.2. Caenorhabditis elegans. [Contig view]
GeneID	189722.
KEGG	cel:Y39A3B.2.
NMPDR	fig|6239.3.peg.8839.
Organism-specific databases
WormBase	WBGene00021437. lgc-42.
WormPep	Y39A3B.2. CE35080. [WorfDB]
Phylogenomic databases
OMA	Q9N517. FRATEMT.
Gene expression databases
ArrayExpress	Q9N517.
Family and domain databases
InterPro	IPR006028. GABAA_rcpt. IPR006029. Neu_channel_TM. IPR006202. Neur_chan_lig_bd. IPR006201. Neur_channel. IPR018000. Neurotransmitter_ion_chnl_CS. [Graphical view]
Gene3D	G3DSA:2.70.170.10. Neur_chan_lig_bd. 1 hit.
PANTHER	PTHR18945. Neur_channel. 1 hit.
Pfam	PF02931. Neur_chan_LBD. 1 hit. PF02932. Neur_chan_memb. 2 hits. [Graphical view]
PRINTS	PR00253. GABAARECEPTR. PR00252. NRIONCHANNEL.
PROSITE	PS00236. NEUROTR_ION_CHANNEL. 1 hit. [Graphical view]
ProtoNet	Search...
Other Resources
NextBio	943412.

Entry information

Entry name

Q9N517_CAEEL

Accession

Primary (citable) accession number: Q9N517

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2000
Last sequence update:	October 1, 2003
Last modified:	May 5, 2009
This is version 60 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)