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Protein

60S ribosomal protein L10a

Gene

rpl-10a

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L10a
Gene namesi
Name:rpl-10a
Synonyms:rpl-1
ORF Names:Y71F9AL.13
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiY71F9AL.13a; CE25552; WBGene00004412; rpl-1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 21621660S ribosomal protein L10aPRO_0000125826Add
BLAST

Proteomic databases

EPDiQ9N4I4.
PaxDbiQ9N4I4.
PRIDEiQ9N4I4.

Expressioni

Gene expression databases

ExpressionAtlasiQ9N4I4. baseline.

Interactioni

Protein-protein interaction databases

BioGridi37332. 5 interactions.
DIPiDIP-25861N.
IntActiQ9N4I4. 2 interactions.
MINTiMINT-1038891.
STRINGi6239.Y71F9AL.13a.1.

Structurei

3D structure databases

ProteinModelPortaliQ9N4I4.
SMRiQ9N4I4. Positions 4-215.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L1P family.Curated

Phylogenomic databases

eggNOGiKOG1570. Eukaryota.
COG0081. LUCA.
GeneTreeiENSGT00390000008767.
HOGENOMiHOG000207014.
InParanoidiQ9N4I4.
KOiK02865.
OMAiRTTNITF.
PhylomeDBiQ9N4I4.

Family and domain databases

Gene3Di3.30.190.20. 2 hits.
3.40.50.790. 1 hit.
InterProiIPR002143. Ribosomal_L1.
IPR023674. Ribosomal_L1-like.
IPR028364. Ribosomal_L1/biogenesis.
IPR016094. Ribosomal_L1_2-a/b-sand.
IPR016095. Ribosomal_L1_3-a/b-sand.
IPR023673. Ribosomal_L1_CS.
[Graphical view]
PfamiPF00687. Ribosomal_L1. 1 hit.
[Graphical view]
PIRSFiPIRSF002155. Ribosomal_L1. 1 hit.
SUPFAMiSSF56808. SSF56808. 1 hit.
PROSITEiPS01199. RIBOSOMAL_L1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9N4I4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKVSRESLN EAIAEVLKGS SEKPRKFRET IELQIGLKNY DPQKDKRFSG
60 70 80 90 100
SIRLKHIPRP NMKVCVFGDQ HHLDEAAAGD IPSMSADDLK KLNKQKKLIK
110 120 130 140 150
KLAKSYDAFI ASESLIKQIP RILGPGLNKA GKFPSVVTHG ESLQSKSDEI
160 170 180 190 200
RATVKFQMKK VLCLSVAVGH VGLTQEELVS NISLSINFLV SLLKKNWQNV
210
RSLNIKSTMG KPQRVY
Length:216
Mass (Da):24,137
Last modified:October 1, 2000 - v1
Checksum:i9843A9DA289CA3BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081777 Genomic DNA. Translation: CCD73507.1.
RefSeqiNP_491061.1. NM_058660.5.
UniGeneiCel.18297.

Genome annotation databases

EnsemblMetazoaiY71F9AL.13a.1; Y71F9AL.13a.1; WBGene00004412.
Y71F9AL.13a.2; Y71F9AL.13a.2; WBGene00004412.
GeneIDi171853.
KEGGicel:CELE_Y71F9AL.13.
UCSCiY71F9AL.13a.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081777 Genomic DNA. Translation: CCD73507.1.
RefSeqiNP_491061.1. NM_058660.5.
UniGeneiCel.18297.

3D structure databases

ProteinModelPortaliQ9N4I4.
SMRiQ9N4I4. Positions 4-215.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi37332. 5 interactions.
DIPiDIP-25861N.
IntActiQ9N4I4. 2 interactions.
MINTiMINT-1038891.
STRINGi6239.Y71F9AL.13a.1.

Proteomic databases

EPDiQ9N4I4.
PaxDbiQ9N4I4.
PRIDEiQ9N4I4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiY71F9AL.13a.1; Y71F9AL.13a.1; WBGene00004412.
Y71F9AL.13a.2; Y71F9AL.13a.2; WBGene00004412.
GeneIDi171853.
KEGGicel:CELE_Y71F9AL.13.
UCSCiY71F9AL.13a.1. c. elegans.

Organism-specific databases

CTDi171853.
WormBaseiY71F9AL.13a; CE25552; WBGene00004412; rpl-1.

Phylogenomic databases

eggNOGiKOG1570. Eukaryota.
COG0081. LUCA.
GeneTreeiENSGT00390000008767.
HOGENOMiHOG000207014.
InParanoidiQ9N4I4.
KOiK02865.
OMAiRTTNITF.
PhylomeDBiQ9N4I4.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiQ9N4I4.

Gene expression databases

ExpressionAtlasiQ9N4I4. baseline.

Family and domain databases

Gene3Di3.30.190.20. 2 hits.
3.40.50.790. 1 hit.
InterProiIPR002143. Ribosomal_L1.
IPR023674. Ribosomal_L1-like.
IPR028364. Ribosomal_L1/biogenesis.
IPR016094. Ribosomal_L1_2-a/b-sand.
IPR016095. Ribosomal_L1_3-a/b-sand.
IPR023673. Ribosomal_L1_CS.
[Graphical view]
PfamiPF00687. Ribosomal_L1. 1 hit.
[Graphical view]
PIRSFiPIRSF002155. Ribosomal_L1. 1 hit.
SUPFAMiSSF56808. SSF56808. 1 hit.
PROSITEiPS01199. RIBOSOMAL_L1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2.

Entry informationi

Entry nameiRL10A_CAEEL
AccessioniPrimary (citable) accession number: Q9N4I4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 31, 2004
Last sequence update: October 1, 2000
Last modified: June 8, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.