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Protein

60S ribosomal protein L10a

Gene

rpl-1

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L10a
Gene namesi
Name:rpl-1Imported
Synonyms:rpl-10aImported
ORF Names:Y71F9AL.13Imported
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiY71F9AL.13a ; CE25552 ; WBGene00004412 ; rpl-1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001258261 – 21660S ribosomal protein L10aAdd BLAST216

Proteomic databases

EPDiQ9N4I4
PaxDbiQ9N4I4
PeptideAtlasiQ9N4I4
PRIDEiQ9N4I4

Expressioni

Gene expression databases

BgeeiWBGene00004412
ExpressionAtlasiQ9N4I4 baseline and differential

Interactioni

Protein-protein interaction databases

BioGridi37332, 5 interactors
DIPiDIP-25861N
IntActiQ9N4I4, 2 interactors
STRINGi6239.Y71F9AL.13a.1

Structurei

3D structure databases

ProteinModelPortaliQ9N4I4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1570 Eukaryota
COG0081 LUCA
GeneTreeiENSGT00390000008767
HOGENOMiHOG000207014
InParanoidiQ9N4I4
KOiK02865
OMAiIHLAINF
OrthoDBiEOG091G0KUI
PhylomeDBiQ9N4I4

Family and domain databases

CDDicd00403 Ribosomal_L1, 1 hit
Gene3Di3.40.50.790, 1 hit
InterProiView protein in InterPro
IPR002143 Ribosomal_L1
IPR023674 Ribosomal_L1-like
IPR028364 Ribosomal_L1/biogenesis
IPR016095 Ribosomal_L1_3-a/b-sand
IPR023673 Ribosomal_L1_CS
PfamiView protein in Pfam
PF00687 Ribosomal_L1, 1 hit
PIRSFiPIRSF002155 Ribosomal_L1, 1 hit
SUPFAMiSSF56808 SSF56808, 1 hit
PROSITEiView protein in PROSITE
PS01199 RIBOSOMAL_L1, 1 hit

Sequencei

Sequence statusi: Complete.

Q9N4I4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKVSRESLN EAIAEVLKGS SEKPRKFRET IELQIGLKNY DPQKDKRFSG
60 70 80 90 100
SIRLKHIPRP NMKVCVFGDQ HHLDEAAAGD IPSMSADDLK KLNKQKKLIK
110 120 130 140 150
KLAKSYDAFI ASESLIKQIP RILGPGLNKA GKFPSVVTHG ESLQSKSDEI
160 170 180 190 200
RATVKFQMKK VLCLSVAVGH VGLTQEELVS NISLSINFLV SLLKKNWQNV
210
RSLNIKSTMG KPQRVY
Length:216
Mass (Da):24,137
Last modified:October 1, 2000 - v1
Checksum:i9843A9DA289CA3BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081777 Genomic DNA Translation: CCD73507.1
RefSeqiNP_491061.1, NM_058660.5
UniGeneiCel.18297

Genome annotation databases

EnsemblMetazoaiY71F9AL.13a.1; Y71F9AL.13a.1; WBGene00004412
Y71F9AL.13a.2; Y71F9AL.13a.2; WBGene00004412
GeneIDi171853
KEGGicel:CELE_Y71F9AL.13
UCSCiY71F9AL.13a.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiRL10A_CAEEL
AccessioniPrimary (citable) accession number: Q9N4I4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 31, 2004
Last sequence update: October 1, 2000
Last modified: May 23, 2018
This is version 121 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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