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Protein

Probable small nuclear ribonucleoprotein G

Gene

snr-7

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Associated with the spliceosome snRNP U1, U2, U4/U6 and U5.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, RNA-binding
Biological processmRNA processing, mRNA splicing

Enzyme and pathway databases

ReactomeiR-CEL-72163. mRNA Splicing - Major Pathway.
R-CEL-72165. mRNA Splicing - Minor Pathway.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable small nuclear ribonucleoprotein G
Short name:
snRNP-G
Alternative name(s):
Sm protein G
Short name:
Sm-G
Short name:
SmG
Gene namesi
Name:snr-7
ORF Names:Y71F9B.4
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiY71F9B.4; CE22871; WBGene00004920; snr-7.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus, Spliceosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001255471 – 77Probable small nuclear ribonucleoprotein GAdd BLAST77

Proteomic databases

EPDiQ9N4G9.
PaxDbiQ9N4G9.
PeptideAtlasiQ9N4G9.
PRIDEiQ9N4G9.

Expressioni

Gene expression databases

BgeeiWBGene00004920.

Interactioni

Protein-protein interaction databases

BioGridi37315. 2 interactors.
IntActiQ9N4G9. 5 interactors.
STRINGi6239.Y71F9B.4.1.

Structurei

3D structure databases

ProteinModelPortaliQ9N4G9.
SMRiQ9N4G9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the snRNP Sm proteins family.Curated

Phylogenomic databases

eggNOGiKOG1780. Eukaryota.
ENOG41122Q1. LUCA.
GeneTreeiENSGT00510000046985.
HOGENOMiHOG000223546.
InParanoidiQ9N4G9.
KOiK11099.
OMAiMDKEMDL.
OrthoDBiEOG091G14J2.
PhylomeDBiQ9N4G9.

Family and domain databases

CDDicd01719. Sm_G. 1 hit.
InterProiView protein in InterPro
IPR001163. LSM_dom_euk/arc.
IPR010920. LSM_dom_sf.
IPR034098. Sm_G.
PfamiView protein in Pfam
PF01423. LSM. 1 hit.
SMARTiView protein in SMART
SM00651. Sm. 1 hit.
SUPFAMiSSF50182. SSF50182. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9N4G9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKTHPPELK KYMDKEMDLK LNGNRRVSGI LRGFDPFMNM VIDEAVEYQK
60 70
DGGSVNLGMT VIRGNSVVIM EPKERIS
Length:77
Mass (Da):8,743
Last modified:October 1, 2000 - v1
Checksum:iDD0AC56F20850A0E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081276 Genomic DNA. Translation: CCD70411.1.
AF303264 mRNA. Translation: AAG50222.1.
RefSeqiNP_491032.1. NM_058631.5.
UniGeneiCel.19416.

Genome annotation databases

EnsemblMetazoaiY71F9B.4.1; Y71F9B.4.1; WBGene00004920.
Y71F9B.4.2; Y71F9B.4.2; WBGene00004920.
GeneIDi171834.
KEGGicel:CELE_Y71F9B.4.
UCSCiY71F9B.4. c. elegans.

Similar proteinsi

Entry informationi

Entry nameiRUXG_CAEEL
AccessioniPrimary (citable) accession number: Q9N4G9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 28, 2003
Last sequence update: October 1, 2000
Last modified: November 22, 2017
This is version 111 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. SIMILARITY comments
    Index of protein domains and families