Q9MXD5 (Q9MXD5_HORSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names	Submitted name: MHC class II associated invariant chain EMBL BAA92343.1
Organism	Equus caballus (Horse) EMBL BAA92343.1
Taxonomic identifier	9796 [NCBI]
Taxonomic lineage	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Laurasiatheria › Perissodactyla › Equidae › Equus › Equus

Protein attributes

Sequence length	208 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Gene Ontology (GO)
Biological_process	antigen processing and presentation Inferred from electronic annotation. Source: InterPro immune response Inferred from electronic annotation. Source: InterPro intracellular protein transport Inferred from electronic annotation. Source: InterPro
Cellular_component	membrane Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q9MXD5 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: 9739F801BE4050F8	FASTA	208	23,425
	10 20 30 40 50 60 MEDQRDLISN HEQVPILGQR PAAPERKCSR GALYTGFSVL VALLLAGQAT TAYFLFQQQG 70 80 90 100 110 120 RPDKLTVTAQ NLQLESLRMK LPKSAKPVSK IRVATPMLMQ ALPMEGLSHG PMQNATKYGN 130 140 150 160 170 180 TTQDHVMHLL LRADPLKVYP QLKGSFQENL KHLKSTMDGL DWKVFENWMH QWLLFEMSRN 190 200 SLEEKPTQGP TKEPLEIEDL SSGVGMAK

References

[1]	"The equine CD74 gene has a polymorphic (CAG)n repeat in the 5'-untranslated region." Tozaki T., Mashima S., Miura N., Tomita M. Anim. Genet. 31:239-240(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AB032166 mRNA. Translation: BAA92343.1.
RefSeq	NP_001093240.1. NM_001099770.1.
UniGene	Eca.13006.
3D structure databases
HSSP	HSSP built from PDB template 1IIE based on UniProtKB P04233.
ProteinModelPortal	Q9MXD5.
SMR	Q9MXD5. Positions 118-192.
ModBase	Search...
Protein-protein interaction databases
STRING	9796.ENSECAP00000006710.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	100071644.
KEGG	ecb:100071644.
Phylogenomic databases
eggNOG	NOG248215.
HOGENOM	HOG000013145.
HOVERGEN	HBG004444.
InParanoid	Q9MXD5.
KO	K06505.
OrthoDB	EOG4WQ13R.
Family and domain databases
Gene3D	1.10.870.10. 1 hit.
InterPro	IPR015386. MHC_II-assoc_invar/CLIP_MHC-bd. IPR022339. MHC_II-assoc_invar_chain. IPR011988. MHC_II-assoc_invariant_trimer. [Graphical view]
PANTHER	PTHR14093. PTHR14093. 1 hit.
Pfam	PF09307. MHC2-interact. 1 hit. PF08831. MHCassoc_trimer. 1 hit. [Graphical view]
PIRSF	PIRSF001992. CD74_antigen. 1 hit.
PRINTS	PR01990. CD74ANTIGEN.
SUPFAM	SSF48305. MHC_II-assoc_invariant_trimer. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q9MXD5_HORSE

Accession

Primary (citable) accession number: Q9MXD5

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2000
Last sequence update:	October 1, 2000
Last modified:	April 3, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)