Q9MAN1 (NGA3_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
B3 domain-containing transcription factor NGA3

Alternative name(s):
Protein NGATHA3

Gene names

Name:	NGA3
Ordered Locus Names:	At1g01030
ORF Names:	T25K16.3

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	358 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. Ref.4
Subcellular location	Nucleus By similarity.
Sequence similarities	Contains 1 TF-B3 DNA-binding domain.
Sequence caution	The sequence BX814729 differs from that shown. Reason: Sequencing errors.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	Nucleus
Ligand	DNA-binding
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	flower development Inferred from mutant phenotype Ref.4. Source: TAIR leaf development Inferred from mutant phenotype Ref.4. Source: TAIR regulation of transcription, DNA-dependent Traceable author statement. Source: TAIR transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 358	358	B3 domain-containing transcription factor NGA3		PRO_0000375093
Regions
	DNA binding	56 – 162	107	TF-B3
	Compositional bias	271 – 277	7	Poly-Pro
	Compositional bias	314 – 319	6	Poly-Ser
	Compositional bias	328 – 342	15	Asp-rich

Sequences

	Sequence		Length	Mass (Da)
	Q9MAN1 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: DCF366CC2D388DAC	FASTA	358	40,288
	10 20 30 40 50 60 MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGPSGNNN NLPMMMIPPP EKEHMFDKVV 70 80 90 100 110 120 TPSDVGKLNR LVIPKQHAER YFPLDSSNNQ NGTLLNFQDR NGKMWRFRYS YWNSSQSYVM 130 140 150 160 170 180 TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN 190 200 210 220 230 240 FPTTSQYSNR FHPLPEYNSV PIHRGLNIGN HQRSYYNTQR QEFVGYGYGN LAGRCYYTGS 250 260 270 280 290 300 PLDHRNIVGS EPLVIDSVPV VPGRLTPVML PPLPPPPSTA GKRLRLFGVN MECGNDYNQQ 310 320 330 340 350 EESWLVPRGE IGASSSSSSA LRLNLSTDHD DDNDDGDDGD DDQFAKKGKS SLSLNFNP

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W. Nature 408:816-820(2000) [PubMed: 11130712] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[3]	"Whole genome sequence comparisons and 'full-length' cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation." Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M., Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M., Weissenbach J., Salanoubat M. Genome Res. 14:406-413(2004) [PubMed: 14993207] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[4]	"Endogenous and synthetic microRNAs stimulate simultaneous, efficient, and localized regulation of multiple targets in diverse species." Alvarez J.P., Pekker I., Goldshmidt A., Blum E., Amsellem Z., Eshed Y. Plant Cell 18:1134-1151(2006) [PubMed: 16603651] [Abstract] Cited for: FUNCTION.
[5]	"The plant B3 superfamily." Swaminathan K., Peterson K., Jack T. Trends Plant Sci. 13:647-655(2008) [PubMed: 18986826] [Abstract] Cited for: GENE FAMILY.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC007323 Genomic DNA. Translation: AAF26476.1. CP002684 Genomic DNA. Translation: AEE27219.1. BX814729 mRNA. No translation available.
IPI	IPI00536920.
PIR	B86141.
RefSeq	NP_171611.1. NM_099985.3.
UniGene	At.49492.
3D structure databases
HSSP	HSSP built from PDB template 1WID based on UniProtKB Q9ZWM9.
ProteinModelPortal	Q9MAN1.
SMR	Q9MAN1. Positions 53-161.
ModBase	Search...
Protein-protein interaction databases
STRING	Q9MAN1.
Proteomic databases
PRIDE	Q9MAN1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT1G01030.1; AT1G01030.1; AT1G01030.
GeneID	839321.
GenomeReviews	Gene locus AT1G01030 in contig CT485782_GR.
KEGG	ath:AT1G01030.
NMPDR	fig|3702.1.peg.205.
Organism-specific databases
TAIR	At1g01030.
Phylogenomic databases
GeneTree	EPGT00050000004578.
HOGENOM	HBG593123.
InParanoid	Q9MAN1.
OMA	RNIVGSE.
PhylomeDB	Q9MAN1.
ProtClustDB	CLSN2912766.
Gene expression databases
Genevestigator	Q9MAN1.
Family and domain databases
InterPro	IPR003340. B3_DNA-bd. IPR015300. DNA-bd_pseudobarrel. [Graphical view]
Gene3D	G3DSA:2.40.330.10. G3DSA:2.40.330.10. 1 hit.
Pfam	PF02362. B3. 1 hit. [Graphical view]
SMART	SM01019. B3. 1 hit. [Graphical view]
SUPFAM	SSF101936. Restrict_endonuc_II_EcoRII_N. 1 hit.
PROSITE	PS50863. B3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

NGA3_ARATH

Accession

Primary (citable) accession number: Q9MAN1

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 26, 2009
Last sequence update:	October 1, 2000
Last modified:	January 25, 2012
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program