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Q9M9C5 (Y1680_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 90. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable leucine-rich repeat receptor-like protein kinase At1g68400
EC=2.7.11.1
Gene names
Ordered Locus Names:At1g68400
ORF Names:T2E12.5
OrganismArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length670 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

ATP + a protein = ADP + a phosphoprotein.

Subcellular location

Cell membrane; Single-pass type I membrane protein By similarity.

Sequence similarities

Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.

Contains 6 LRR (leucine-rich) repeats.

Contains 1 protein kinase domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2929 Potential
Chain30 – 670641Probable leucine-rich repeat receptor-like protein kinase At1g68400
PRO_0000401342

Regions

Topological domain30 – 274245Extracellular Potential
Transmembrane275 – 29521Helical; Potential
Topological domain296 – 670375Cytoplasmic Potential
Repeat69 – 9123LRR 1
Repeat92 – 11423LRR 2
Repeat115 – 13723LRR 3
Repeat139 – 16224LRR 4
Repeat163 – 18523LRR 5
Repeat186 – 20722LRR 6
Domain362 – 636275Protein kinase
Nucleotide binding368 – 3769ATP By similarity

Sites

Active site4911Proton acceptor By similarity
Binding site3901ATP By similarity

Amino acid modifications

Glycosylation521N-linked (GlcNAc...) Potential
Glycosylation791N-linked (GlcNAc...) Potential
Glycosylation1021N-linked (GlcNAc...) Potential
Glycosylation1091N-linked (GlcNAc...) Potential
Glycosylation1121N-linked (GlcNAc...) Potential
Glycosylation1491N-linked (GlcNAc...) Potential
Glycosylation1821N-linked (GlcNAc...) Potential
Glycosylation1901N-linked (GlcNAc...) Potential
Glycosylation2681N-linked (GlcNAc...) Potential

Experimental info

Sequence conflict4001G → GK in AAK55693. Ref.3
Sequence conflict4001G → GK in AAM26714. Ref.3

Sequences

Sequence LengthMass (Da)Tools
Q9M9C5 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: A27282EC4FB37C25

FASTA67073,521
        10         20         30         40         50         60 
MAKSSFFNKH LLLSLLILLQ SCLLSSSSST DSETLLNFKL TADSTGKLNS WNTTTNPCQW 

        70         80         90        100        110        120 
TGVSCNRNRV TRLVLEDINL TGSISSLTSL TSLRVLSLKH NNLSGPIPNL SNLTALKLLF 

       130        140        150        160        170        180 
LSNNQFSGNF PTSITSLTRL YRLDLSFNNF SGQIPPDLTD LTHLLTLRLE SNRFSGQIPN 

       190        200        210        220        230        240 
INLSDLQDFN VSGNNFNGQI PNSLSQFPES VFTQNPSLCG APLLKCTKLS SDPTKPGRPD 

       250        260        270        280        290        300 
EAKASPLNKP ETVPSSPTSI HGGDKSNNTS RISTISLIAI ILGDFIILSF VSLLLYYCFW 

       310        320        330        340        350        360 
RQYAVNKKKH SKILEGEKIV YSSNPYPTST QNNNNQNQQV GDKGKMVFFE GTRRFELEDL 

       370        380        390        400        410        420 
LRASAEMLGK GGFGTAYKAV LEDGNEVAVK RLKDAVTVAG KKEFEQQMEV LGRLRHTNLV 

       430        440        450        460        470        480 
SLKAYYFARE EKLLVYDYMP NGSLFWLLHG NRGPGRTPLD WTTRLKIAAG AARGLAFIHG 

       490        500        510        520        530        540 
SCKTLKLTHG DIKSTNVLLD RSGNARVSDF GLSIFAPSQT VAKSNGYRAP ELIDGRKHTQ 

       550        560        570        580        590        600 
KSDVYSFGVL LLEILTGKCP NMVETGHSGG AVDLPRWVQS VVREEWTAEV FDLELMRYKD 

       610        620        630        640        650        660 
IEEEMVGLLQ IAMACTAVAA DHRPKMGHVV KLIEDIRGGG SEASPCNDGI NSAVDSPCLS 

       670 
EDTCGGTTSQ

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed: 11130712] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed: 14593172] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[4]"Genome-wide cloning and sequence analysis of leucine-rich repeat receptor-like protein kinase genes in Arabidopsis thaliana."
Gou X., He K., Yang H., Yuan T., Lin H., Clouse S.D., Li J.
BMC Genomics 11:19-19(2010) [PubMed: 20064227] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AC015986 Genomic DNA. Translation: AAF26042.1.
CP002684 Genomic DNA. Translation: AEE34789.1.
AF378890 mRNA. Translation: AAK55693.1.
AY102147 mRNA. Translation: AAM26714.1.
FJ708673 mRNA. Translation: ACN59268.1.
IPIIPI00527209.
PIRH96707.
RefSeqNP_177007.1. NM_105511.2.
UniGeneAt.19099.

3D structure databases

HSSPHSSP built from PDB template 1IAS based on UniProtKB P36897.
ProteinModelPortalQ9M9C5.
SMRQ9M9C5. Positions 26-211, 352-636.
ModBaseSearch...

Protein-protein interaction databases

IntActQ9M9C5. 6 interactions.
STRINGQ9M9C5.

Proteomic databases

PRIDEQ9M9C5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT1G68400.1; AT1G68400.1; AT1G68400.
GeneID843169.
GenomeReviewsGene locus AT1G68400 in contig CT485782_GR.
KEGGath:AT1G68400.
NMPDRfig|3702.1.peg.6292.

Organism-specific databases

GeneFarm537. 47.
TAIRAt1g68400.

Phylogenomic databases

GeneTreeEPGT00070000028259.
HOGENOMHBG755340.
InParanoidQ9M9C5.
OMAVYSSSPY.
PhylomeDBQ9M9C5.
ProtClustDBCLSN2682287.

Gene expression databases

GenevestigatorQ9M9C5.

Family and domain databases

InterProIPR011009. Kinase-like_dom.
IPR001611. Leu-rich_rpt.
IPR013210. LRR-contain_N2.
IPR000719. Prot_kinase_cat_dom.
IPR017441. Protein_kinase_ATP_BS.
IPR017442. Se/Thr_kinase-like_dom.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view]
PfamPF00560. LRR_1. 1 hit.
PF08263. LRRNT_2. 1 hit.
PF00069. Pkinase. 1 hit.
[Graphical view]
SUPFAMSSF56112. Kinase_like. 1 hit.
PROSITEPS51450. LRR. 4 hits.
PS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY1680_ARATH
AccessionPrimary (citable) accession number: Q9M9C5
Secondary accession number(s): Q94JL9
Entry history
Integrated into UniProtKB/Swiss-Prot: November 30, 2010
Last sequence update: October 1, 2000
Last modified: December 14, 2011
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·Documents