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Protein
Submitted name:

At3g53980

Gene

F5K20_280

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
At3g53980Imported
Submitted name:
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily proteinImported
Submitted name:
Putative uncharacterized protein At3g53980Imported
Submitted name:
Putative uncharacterized protein F5K20_280Imported
Gene namesi
Name:F5K20_280Imported
Ordered Locus Names:At3g53980Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G53980.

PTM / Processingi

Proteomic databases

PRIDEiQ9M329.

Expressioni

Gene expression databases

GenevestigatoriQ9M329.

Interactioni

Protein-protein interaction databases

IntActiQ9M329. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliQ9M329.
SMRiQ9M329. Positions 32-103.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000240789.
InParanoidiQ9M329.
OMAiKRCNIPN.
PhylomeDBiQ9M329.

Family and domain databases

InterProiIPR016140. Bifunc_inhib/LTP/seed_store.
[Graphical view]
PfamiPF14368. LTP_2. 1 hit.
[Graphical view]
SMARTiSM00499. AAI. 1 hit.
[Graphical view]
SUPFAMiSSF47699. SSF47699. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9M329-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAASMKFLCI LGLILLIGTV VDGAGECGRS SPDNEAMKLA PCAGAAQDAN
60 70 80 90 100
SAVPGGCCTQ IKRFSQNPKC LCAILLSDTA KASGVDPEVA LTIPKRCNFA
110
NRPVGYKCGA YTLP
Length:114
Mass (Da):11,723
Last modified:October 1, 2000 - v1
Checksum:i5F4FC1F8C7FE8B34
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT002445 mRNA. Translation: AAO00805.1.
BT006519 mRNA. Translation: AAP21327.1.
CP002686 Genomic DNA. Translation: AEE79167.1.
CP002686 Genomic DNA. Translation: AEE79168.1.
AL132960 Genomic DNA. Translation: CAB88360.1.
PIRiT45938.
RefSeqiNP_190966.1. NM_115258.2.
NP_850700.1. NM_180369.3.
UniGeneiAt.1411.

Genome annotation databases

EnsemblPlantsiAT3G53980.1; AT3G53980.1; AT3G53980.
AT3G53980.2; AT3G53980.2; AT3G53980.
GeneIDi824565.
KEGGiath:AT3G53980.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT002445 mRNA. Translation: AAO00805.1.
BT006519 mRNA. Translation: AAP21327.1.
CP002686 Genomic DNA. Translation: AEE79167.1.
CP002686 Genomic DNA. Translation: AEE79168.1.
AL132960 Genomic DNA. Translation: CAB88360.1.
PIRiT45938.
RefSeqiNP_190966.1. NM_115258.2.
NP_850700.1. NM_180369.3.
UniGeneiAt.1411.

3D structure databases

ProteinModelPortaliQ9M329.
SMRiQ9M329. Positions 32-103.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ9M329. 1 interaction.

Proteomic databases

PRIDEiQ9M329.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G53980.1; AT3G53980.1; AT3G53980.
AT3G53980.2; AT3G53980.2; AT3G53980.
GeneIDi824565.
KEGGiath:AT3G53980.

Organism-specific databases

TAIRiAT3G53980.

Phylogenomic databases

HOGENOMiHOG000240789.
InParanoidiQ9M329.
OMAiKRCNIPN.
PhylomeDBiQ9M329.

Gene expression databases

GenevestigatoriQ9M329.

Family and domain databases

InterProiIPR016140. Bifunc_inhib/LTP/seed_store.
[Graphical view]
PfamiPF14368. LTP_2. 1 hit.
[Graphical view]
SMARTiSM00499. AAI. 1 hit.
[Graphical view]
SUPFAMiSSF47699. SSF47699. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Monfort A., Casacuberta E., Puigdomenech P., Mewes H.W., Rudd S., Lemcke K., Mayer K.F.X., Quetier F., Salanoubat M.
    Submitted (NOV-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Blocker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schafer M., Muller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Lohnert T.H., Nordsiek G., Reichelt J., Scharfe M., Schon O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwalder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.P., Cottet A., Casacuberta E., Monfort A., Argiriou A., flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.W., Mayer K.F., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  3. EU Arabidopsis sequencing project
    Submitted (APR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. Cited for: NUCLEOTIDE SEQUENCE.
  5. Cited for: NUCLEOTIDE SEQUENCE.
  6. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  7. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiQ9M329_ARATH
AccessioniPrimary (citable) accession number: Q9M329
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: May 27, 2015
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.