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Protein
Submitted name:

AT3G53990 protein

Gene

F5K20_290

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • response to cold Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

HydrolaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
AT3G53990 proteinImported
Submitted name:
AT3g53990Imported
Submitted name:
AT3g53990/F5K20_290Imported
Submitted name:
Adenine nucleotide alpha hydrolases-like superfamily proteinImported
Submitted name:
Putative uncharacterized protein At3g53990Imported
Submitted name:
Putative uncharacterized protein F5K20_290Imported
Gene namesi
Name:F5K20_290Imported
Ordered Locus Names:At3g53990Imported, At3g53990/F5K20_290Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G53990.

Subcellular locationi

GO - Cellular componenti

  • plasma membrane Source: TAIR
  • plasmodesma Source: TAIR
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiQ9M328.

Expressioni

Gene expression databases

ExpressionAtlasiQ9M328. baseline and differential.

Interactioni

Protein-protein interaction databases

IntActiQ9M328. 1 interaction.
STRINGi3702.AT3G53990.1.

Structurei

3D structure databases

ProteinModelPortaliQ9M328.
SMRiQ9M328. Positions 12-157.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000238898.
InParanoidiQ9M328.
OMAiKIDIACL.
PhylomeDBiQ9M328.

Family and domain databases

Gene3Di3.40.50.620. 1 hit.
InterProiIPR014729. Rossmann-like_a/b/a_fold.
IPR006015. Universal_stress_UspA.
IPR006016. UspA.
[Graphical view]
PfamiPF00582. Usp. 1 hit.
[Graphical view]
PRINTSiPR01438. UNVRSLSTRESS.

Sequencei

Sequence statusi: Complete.

Q9M328-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKDRNIGIA MDFSESSKNA LKWAIENLAD KGDTIYIIHT LPLSGDESRN
60 70 80 90 100
SLWFKSGSPL IPLAEFREPE IMEKYGVKTD IACLDMLDTG SRQKEVHVVT
110 120 130 140 150
KLYWGDAREK LVDAVKDLKL DSIVMGSRGL SALQRIIMGS VSSFVIQHAP
160
CPVTVVKDNE
Length:160
Mass (Da):17,794
Last modified:October 1, 2000 - v1
Checksum:iE98876EB666AFE7B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF324682 mRNA. Translation: AAG40033.1.
AF325038 mRNA. Translation: AAG40390.1.
AF326902 mRNA. Translation: AAG41484.1.
AF339721 mRNA. Translation: AAK00403.1.
AF361855 mRNA. Translation: AAK32867.1.
AY052325 mRNA. Translation: AAK96518.1.
AY061900 mRNA. Translation: AAL31227.1.
AY070476 mRNA. Translation: AAL49942.1.
CP002686 Genomic DNA. Translation: AEE79170.1.
AK220607 mRNA. Translation: BAD94963.1.
AK317067 mRNA. Translation: BAH19759.1.
AL132960 Genomic DNA. Translation: CAB88361.1.
PIRiT45939.
RefSeqiNP_566991.2. NM_115259.4.
UniGeneiAt.23225.

Genome annotation databases

EnsemblPlantsiAT3G53990.1; AT3G53990.1; AT3G53990.
GeneIDi824566.
KEGGiath:AT3G53990.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF324682 mRNA. Translation: AAG40033.1.
AF325038 mRNA. Translation: AAG40390.1.
AF326902 mRNA. Translation: AAG41484.1.
AF339721 mRNA. Translation: AAK00403.1.
AF361855 mRNA. Translation: AAK32867.1.
AY052325 mRNA. Translation: AAK96518.1.
AY061900 mRNA. Translation: AAL31227.1.
AY070476 mRNA. Translation: AAL49942.1.
CP002686 Genomic DNA. Translation: AEE79170.1.
AK220607 mRNA. Translation: BAD94963.1.
AK317067 mRNA. Translation: BAH19759.1.
AL132960 Genomic DNA. Translation: CAB88361.1.
PIRiT45939.
RefSeqiNP_566991.2. NM_115259.4.
UniGeneiAt.23225.

3D structure databases

ProteinModelPortaliQ9M328.
SMRiQ9M328. Positions 12-157.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ9M328. 1 interaction.
STRINGi3702.AT3G53990.1.

Proteomic databases

PRIDEiQ9M328.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G53990.1; AT3G53990.1; AT3G53990.
GeneIDi824566.
KEGGiath:AT3G53990.

Organism-specific databases

TAIRiAT3G53990.

Phylogenomic databases

HOGENOMiHOG000238898.
InParanoidiQ9M328.
OMAiKIDIACL.
PhylomeDBiQ9M328.

Gene expression databases

ExpressionAtlasiQ9M328. baseline and differential.

Family and domain databases

Gene3Di3.40.50.620. 1 hit.
InterProiIPR014729. Rossmann-like_a/b/a_fold.
IPR006015. Universal_stress_UspA.
IPR006016. UspA.
[Graphical view]
PfamiPF00582. Usp. 1 hit.
[Graphical view]
PRINTSiPR01438. UNVRSLSTRESS.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Monfort A., Casacuberta E., Puigdomenech P., Mewes H.W., Rudd S., Lemcke K., Mayer K.F.X., Quetier F., Salanoubat M.
    Submitted (NOV-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Blocker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schafer M., Muller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Lohnert T.H., Nordsiek G., Reichelt J., Scharfe M., Schon O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwalder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.P., Cottet A., Casacuberta E., Monfort A., Argiriou A., flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.W., Mayer K.F., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  3. EU Arabidopsis sequencing project
    Submitted (APR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. Cited for: NUCLEOTIDE SEQUENCE.
  5. "Arabidopsis Open Reading Frame (ORF) Clones."
    Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Etgu P., Lee J.M., Toriumi M., Yu G., Brooks S., Chao Q., Chen H., Karlin-Neumann G., Kim C., Lam B., Miranda M., Nguyen M., Palm C.J.
    , Shinn P., Southwick A., Davis R.W., Ecker J.R., Theologis A.
    Submitted (JAN-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  6. Cited for: NUCLEOTIDE SEQUENCE.
  7. Cited for: NUCLEOTIDE SEQUENCE.
  8. Cited for: NUCLEOTIDE SEQUENCE.
  9. Cited for: NUCLEOTIDE SEQUENCE.
  10. Cited for: NUCLEOTIDE SEQUENCE.
  11. Cited for: NUCLEOTIDE SEQUENCE.
  12. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
    , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  13. "Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs."
    Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M., Shinozaki K.
    DNA Res. 0:0-0(2009)
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: Rosette leafImported.
  14. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  15. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiQ9M328_ARATH
AccessioniPrimary (citable) accession number: Q9M328
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: July 22, 2015
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.