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Protein

Dof zinc finger protein DOF3.6

Gene

DOF3.6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri76 – 130Dof-typePROSITE-ProRule annotationAdd BLAST55

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Dof zinc finger protein DOF3.6
Short name:
AtDOF3.6
Alternative name(s):
OBF-binding protein 3
Gene namesi
Name:DOF3.6
Synonyms:OBP3
Ordered Locus Names:At3g55370
ORF Names:T22E16.30
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G55370.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000742821 – 323Dof zinc finger protein DOF3.6Add BLAST323

Expressioni

Tissue specificityi

Predominantly expressed in roots.1 Publication

Inductioni

By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA).2 Publications

Gene expression databases

ExpressionAtlasiQ9M2U1. baseline and differential.
GenevisibleiQ9M2U1. AT.

Interactioni

Subunit structurei

Interacts with OBF4.1 Publication

Protein-protein interaction databases

BioGridi10019. 1 interactor.
IntActiQ9M2U1. 1 interactor.
MINTiMINT-8069760.

Structurei

3D structure databases

ProteinModelPortaliQ9M2U1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 Dof-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri76 – 130Dof-typePROSITE-ProRule annotationAdd BLAST55

Keywords - Domaini

Zinc-finger

Phylogenomic databases

HOGENOMiHOG000239956.
InParanoidiQ9M2U1.
PhylomeDBiQ9M2U1.

Family and domain databases

InterProiIPR003851. Znf_Dof.
[Graphical view]
PfamiPF02701. zf-Dof. 1 hit.
[Graphical view]
ProDomiPD007478. Znf_Dof. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS01361. ZF_DOF_1. 1 hit.
PS50884. ZF_DOF_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: Q9M2U1-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA
60 70 80 90 100
GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
110 120 130 140 150
HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS
160 170 180 190 200
SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
210 220 230 240 250
TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL
260 270 280 290 300
LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
310 320
TSWGGNSSWT GFTSNNSTGH LSF
Length:323
Mass (Da):35,522
Last modified:October 25, 2004 - v2
Checksum:iD2CF8C4377E7AED9
GO

Sequence cautioni

The sequence AAD38988 differs from that shown. Reason: Erroneous initiation.Curated
The sequence CAB75895 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132975 Genomic DNA. Translation: CAB75895.1. Sequence problems.
CP002686 Genomic DNA. Translation: AEE79373.1.
AK221402 mRNA. Translation: BAD94355.1.
BT033028 mRNA. Translation: ACE73109.1.
AF155818 mRNA. Translation: AAD38988.1. Different initiation.
PIRiT47676.
T50640.
RefSeqiNP_191097.3. NM_115395.6. [Q9M2U1-1]
UniGeneiAt.19958.

Genome annotation databases

EnsemblPlantsiAT3G55370.1; AT3G55370.1; AT3G55370. [Q9M2U1-1]
GeneIDi824703.
GrameneiAT3G55370.1; AT3G55370.1; AT3G55370.
KEGGiath:AT3G55370.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132975 Genomic DNA. Translation: CAB75895.1. Sequence problems.
CP002686 Genomic DNA. Translation: AEE79373.1.
AK221402 mRNA. Translation: BAD94355.1.
BT033028 mRNA. Translation: ACE73109.1.
AF155818 mRNA. Translation: AAD38988.1. Different initiation.
PIRiT47676.
T50640.
RefSeqiNP_191097.3. NM_115395.6. [Q9M2U1-1]
UniGeneiAt.19958.

3D structure databases

ProteinModelPortaliQ9M2U1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi10019. 1 interactor.
IntActiQ9M2U1. 1 interactor.
MINTiMINT-8069760.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G55370.1; AT3G55370.1; AT3G55370. [Q9M2U1-1]
GeneIDi824703.
GrameneiAT3G55370.1; AT3G55370.1; AT3G55370.
KEGGiath:AT3G55370.

Organism-specific databases

TAIRiAT3G55370.

Phylogenomic databases

HOGENOMiHOG000239956.
InParanoidiQ9M2U1.
PhylomeDBiQ9M2U1.

Miscellaneous databases

PROiQ9M2U1.

Gene expression databases

ExpressionAtlasiQ9M2U1. baseline and differential.
GenevisibleiQ9M2U1. AT.

Family and domain databases

InterProiIPR003851. Znf_Dof.
[Graphical view]
PfamiPF02701. zf-Dof. 1 hit.
[Graphical view]
ProDomiPD007478. Znf_Dof. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS01361. ZF_DOF_1. 1 hit.
PS50884. ZF_DOF_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiDOF36_ARATH
AccessioniPrimary (citable) accession number: Q9M2U1
Secondary accession number(s): Q56YC1, Q9XGU4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 25, 2004
Last sequence update: October 25, 2004
Last modified: November 30, 2016
This is version 95 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.