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Protein

Dof zinc finger protein DOF3.6

Gene

DOF3.6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri76 – 130Dof-typePROSITE-ProRule annotationAdd BLAST55

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Dof zinc finger protein DOF3.6
Short name:
AtDOF3.6
Alternative name(s):
OBF-binding protein 3
Gene namesi
Name:DOF3.6
Synonyms:OBP3
Ordered Locus Names:At3g55370
ORF Names:T22E16.30
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G55370

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000742821 – 323Dof zinc finger protein DOF3.6Add BLAST323

Expressioni

Tissue specificityi

Predominantly expressed in roots.1 Publication

Inductioni

By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA).2 Publications

Gene expression databases

ExpressionAtlasiQ9M2U1 baseline and differential
GenevisibleiQ9M2U1 AT

Interactioni

Subunit structurei

Interacts with OBF4.1 Publication

Protein-protein interaction databases

BioGridi100191 interactor.
IntActiQ9M2U1 1 interactor.

Structurei

3D structure databases

ProteinModelPortaliQ9M2U1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri76 – 130Dof-typePROSITE-ProRule annotationAdd BLAST55

Keywords - Domaini

Zinc-finger

Phylogenomic databases

HOGENOMiHOG000239956
InParanoidiQ9M2U1
PhylomeDBiQ9M2U1

Family and domain databases

InterProiView protein in InterPro
IPR003851 Znf_Dof
PfamiView protein in Pfam
PF02701 zf-Dof, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD007478 Znf_Dof, 1 hit
PROSITEiView protein in PROSITE
PS01361 ZF_DOF_1, 1 hit
PS50884 ZF_DOF_2, 1 hit

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: Q9M2U1-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MVFSSLPVNQ FDSQNWQQQG NQHQLECVTT DQNPNNYLRQ LSSPPTSQVA
60 70 80 90 100
GSSQARVNSM VERARIAKVP LPEAALNCPR CDSTNTKFCY FNNYSLTQPR
110 120 130 140 150
HFCKTCRRYW TRGGSLRNVP VGGGFRRNKR SKSRSKSTVV VSTDNTTSTS
160 170 180 190 200
SLTSRPSYSN PSKFHSYGQI PEFNSNLPIL PPLQSLGDYN SSNTGLDFGG
210 220 230 240 250
TQISNMISGM SSSGGILDAW RIPPSQQAQQ FPFLINTTGL VQSSNALYPL
260 270 280 290 300
LEGGVSATQT RNVKAEENDQ DRGRDGDGVN NLSRNFLGNI NINSGRNEEY
310 320
TSWGGNSSWT GFTSNNSTGH LSF
Length:323
Mass (Da):35,522
Last modified:October 25, 2004 - v2
Checksum:iD2CF8C4377E7AED9
GO

Sequence cautioni

The sequence AAD38988 differs from that shown. Reason: Erroneous initiation.Curated
The sequence CAB75895 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132975 Genomic DNA Translation: CAB75895.1 Sequence problems.
CP002686 Genomic DNA Translation: AEE79373.1
AK221402 mRNA Translation: BAD94355.1
BT033028 mRNA Translation: ACE73109.1
AF155818 mRNA Translation: AAD38988.1 Different initiation.
PIRiT47676
T50640
RefSeqiNP_191097.3, NM_115395.6 [Q9M2U1-1]
UniGeneiAt.19958

Genome annotation databases

EnsemblPlantsiAT3G55370.1; AT3G55370.1; AT3G55370 [Q9M2U1-1]
GeneIDi824703
GrameneiAT3G55370.1; AT3G55370.1; AT3G55370 [Q9M2U1-1]
KEGGiath:AT3G55370

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiDOF36_ARATH
AccessioniPrimary (citable) accession number: Q9M2U1
Secondary accession number(s): Q56YC1, Q9XGU4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 25, 2004
Last sequence update: October 25, 2004
Last modified: April 25, 2018
This is version 103 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome