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Protein

40S ribosomal protein S15a-5

Gene

RPS15AE

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • mature ribosome assembly Source: CAFA
  • ribosome assembly Source: CAFA
  • translation Source: InterPro

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S15a-5
Gene namesi
Name:RPS15AE
Ordered Locus Names:At4g29430
ORF Names:F17A13.250
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G29430.
TAIRilocus:2118319. AT4G29430.

Subcellular locationi

GO - Cellular componenti

  • cytosolic ribosome Source: TAIR
  • cytosolic small ribosomal subunit Source: TAIR
  • mitochondrion Source: TAIR
  • polysomal ribosome Source: CAFA
  • vacuole Source: TAIR

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002501701 – 12940S ribosomal protein S15a-5Add BLAST129

Proteomic databases

PaxDbiQ9M0E0.

Expressioni

Gene expression databases

ExpressionAtlasiQ9M0E0. baseline and differential.
GenevisibleiQ9M0E0. AT.

Interactioni

Protein-protein interaction databases

BioGridi14351. 1 interactor.
MINTiMINT-8070325.
STRINGi3702.AT4G29430.1.

Structurei

3D structure databases

ProteinModelPortaliQ9M0E0.
SMRiQ9M0E0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1754. Eukaryota.
COG0096. LUCA.
HOGENOMiHOG000204097.
InParanoidiQ9M0E0.
KOiK02957.
OMAiASMENYK.
OrthoDBiEOG09360SBF.
PhylomeDBiQ9M0E0.

Family and domain databases

InterProiView protein in InterPro
IPR000630. Ribosomal_S8.
PANTHERiPTHR11758. PTHR11758. 1 hit.
PfamiView protein in Pfam
PF00410. Ribosomal_S8. 1 hit.
SUPFAMiSSF56047. SSF56047. 1 hit.
PROSITEiView protein in PROSITE
PS00053. RIBOSOMAL_S8. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9M0E0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRRILNDAL RTIVNAERRG KASVELKPIS TVMSSFLRIM KEKGYIKNFQ
60 70 80 90 100
VYDPHRVGRI TVDLQGRVND CKALTYRQDV RAKEIEKYTE RTLPTRQWGY
110 120
VVITTPDGIL DHEEAIKRNV GGQVLGFFY
Length:129
Mass (Da):14,916
Last modified:October 1, 2000 - v1
Checksum:iFAFA0F2E921D1967
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL096692 Genomic DNA. No translation available.
AL161575 Genomic DNA. Translation: CAB79701.1.
CP002687 Genomic DNA. Translation: AEE85630.1.
AK228983 mRNA. Translation: BAF00871.1.
BT026503 mRNA. Translation: ABH04610.1.
AY085780 mRNA. Translation: AAM62997.1.
PIRiD85343.
RefSeqiNP_194672.1. NM_119088.4.
UniGeneiAt.31923.

Genome annotation databases

EnsemblPlantsiAT4G29430.1; AT4G29430.1; AT4G29430.
GeneIDi829064.
GrameneiAT4G29430.1; AT4G29430.1; AT4G29430.
KEGGiath:AT4G29430.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiR15A5_ARATH
AccessioniPrimary (citable) accession number: Q9M0E0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 19, 2006
Last sequence update: October 1, 2000
Last modified: June 7, 2017
This is version 91 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families