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Protein

Regulatory-associated protein of TOR 2

Gene

RAPTOR2

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Probable component of the plant TOR kinase pathway.By similarity

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-ATH-3371571. HSF1-dependent transactivation.

Names & Taxonomyi

Protein namesi
Recommended name:
Regulatory-associated protein of TOR 2
Alternative name(s):
Protein RAPTOR 1A
Short name:
AtRaptor1a
Protein RAPTOR 2
Gene namesi
Name:RAPTOR2
Synonyms:RAPTOR1A
Ordered Locus Names:At5g01770
ORF Names:T20L15.40
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G01770.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Pathology & Biotechi

Disruption phenotypei

No visible phenotype under normal growth condition.2 Publications

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 13361336Regulatory-associated protein of TOR 2PRO_0000409333Add
BLAST

Proteomic databases

PaxDbiQ9LZW9.
PRIDEiQ9LZW9.

Expressioni

Tissue specificityi

Expressed at low levels in roots, leaves, flowers and seeds.1 Publication

Gene expression databases

GenevisibleiQ9LZW9. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G01770.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LZW9.
SMRiQ9LZW9. Positions 594-649, 996-1021, 1107-1312.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati1008 – 104740WD 1Add
BLAST
Repeati1053 – 110250WD 2Add
BLAST
Repeati1116 – 115540WD 3Add
BLAST
Repeati1159 – 119941WD 4Add
BLAST
Repeati1205 – 124642WD 5Add
BLAST
Repeati1250 – 128940WD 6Add
BLAST
Repeati1298 – 133639WD 7Add
BLAST

Sequence similaritiesi

Belongs to the WD repeat RAPTOR family.Curated
Contains 7 WD repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

eggNOGiKOG1517. Eukaryota.
ENOG410XQKJ. LUCA.
InParanoidiQ9LZW9.
KOiK07204.
OMAiESCLEAN.

Family and domain databases

Gene3Di1.25.10.10. 1 hit.
2.130.10.10. 1 hit.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR004083. Raptor.
IPR029347. Raptor_N.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PANTHERiPTHR12848. PTHR12848. 1 hit.
PfamiPF14538. Raptor_N. 1 hit.
[Graphical view]
SMARTiSM01302. Raptor_N. 1 hit.
SM00320. WD40. 6 hits.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.
SSF50978. SSF50978. 1 hit.
PROSITEiPS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LZW9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALGDLMVSR LSQSSVTVVT NHLYDDDDNC ASSAHDDSRV SIIASPRVAS
60 70 80 90 100
SSYENLSAAT SMAYLPQTLV LCDLRHDDAS DIVQPPRWRL KERMKTGCVA
110 120 130 140 150
LVMCLHITVD PPDVIKISPC ARLECWIDPF SMFPPRRALE AIGQNLSIQY
160 170 180 190 200
ERWLARARYK VELDPTKDDV RKLCLSCRKY AKTERVLFHY NGHGVPKPTP
210 220 230 240 250
NGEIWVYNKN FTQYIPLPVS ELDSWLKTPT IYVFDCSAAR VILNAFAEGE
260 270 280 290 300
SSGPPKDCIL LAACDVHETL PQSVEFPADV FTSCLTTPIN IALKWFCRRS
310 320 330 340 350
LLKEFIDESL IDRIPGRQND RKTLLGELNW IFTAVTDTIA WNVLPRELFQ
360 370 380 390 400
RLFRQDLLVA SLFRNFLLAE RIMRSGNCTP ISHPMLPPTH QHHMWDAWDM
410 420 430 440 450
AAEICLSQLP QFFLDPNTEF QPSSFFTEQL TAFEVWLDHG SEHKKPPEQL
460 470 480 490 500
PIVLQVLLSQ CHRYRALVLL GRFLDMGPWA VDLALSVGIY PCVVKLLQTT
510 520 530 540 550
TIELRQILVF IWTKILALDK SCQVDLVKDR GHIYFIRFLD SSDAFPEQRA
560 570 580 590 600
MAAFILAVIV DGYKRGQESC LEANLIAVCL GHLEATQLCD PPPEPLFLQW
610 620 630 640 650
LCLCLGKLWE DYLEAQIMGR EANASENLIA GHTNLLQVRA AAVFALGTLL
660 670 680 690 700
DVGFDSGKGV CDEEFDDDEN IVEDIIIKSL LDVVSDGSPL VRTEVAVALA
710 720 730 740 750
RFAFGHKQHL KSVADSYWKP QNSLRTSLPS MAKFHDSGTS IVASSDMGSL
760 770 780 790 800
TRASPDSQPV AREGRISSSL QEPFSGLMQG SPLADDSSLH SDVGIIHDGV
810 820 830 840 850
SNGVVHQPRP LDNAIYSQSV LAMFTLAKDP SPRIASLGRR VLSVIGIEQI
860 870 880 890 900
VAKPSKSNGR PGEAASASHT PLAGLVRSSS WFDMHTGHLP LTFRTPPVSP
910 920 930 940 950
PQTSYLTGLR RVCSLELRPH LLGSPDSGLA DPILGVSGSE RSLLPQSTIY
960 970 980 990 1000
NWSCGHFSKP LLGGADANEE IAAQREEKKK FSLEHIAKCQ HSSISGLSNI
1010 1020 1030 1040 1050
PIANWDTKFE TGTKTALLHP FSPIVVAADE NERIRVWNYE EATLLNGFDN
1060 1070 1080 1090 1100
NDFPDKGISN LCLVNELDDS LLLVASCNVP TLSRASFAIR IWKDYATKGR
1110 1120 1130 1140 1150
QKLVTGFSSI QGQKPGASGL NAVVDWQQQS GYLYVSGESL SIMVWDLDKE
1160 1170 1180 1190 1200
QLVKSMPFES GCSVTALSAS QVHGSQLAAG FADGSVRLYD VRTPDFLVCA
1210 1220 1230 1240 1250
TRPHQRVEKV VGLSFQPGLD PAKIVSASQA GDIQFLDLRR PKETYLTIDA
1260 1270 1280 1290 1300
HRGSLTALGV HRHAPIIASG SAKQLIKVFS LKGEQLGIIK YHTSFMGQQI
1310 1320 1330
GPVSCLAFHP YQMLLAAGAA GSFVSLYTHH NTQLPR
Length:1,336
Mass (Da):147,640
Last modified:May 31, 2011 - v2
Checksum:i7E6A5C25A4476D17
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL162351 Genomic DNA. Translation: CAB82747.1.
CP002688 Genomic DNA. Translation: AED90389.1.
PIRiT48198.
RefSeqiNP_195797.3. NM_120255.3.
UniGeneiAt.54678.

Genome annotation databases

EnsemblPlantsiAT5G01770.1; AT5G01770.1; AT5G01770.
GeneIDi831681.
GrameneiAT5G01770.1; AT5G01770.1; AT5G01770.
KEGGiath:AT5G01770.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL162351 Genomic DNA. Translation: CAB82747.1.
CP002688 Genomic DNA. Translation: AED90389.1.
PIRiT48198.
RefSeqiNP_195797.3. NM_120255.3.
UniGeneiAt.54678.

3D structure databases

ProteinModelPortaliQ9LZW9.
SMRiQ9LZW9. Positions 594-649, 996-1021, 1107-1312.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G01770.1.

Proteomic databases

PaxDbiQ9LZW9.
PRIDEiQ9LZW9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G01770.1; AT5G01770.1; AT5G01770.
GeneIDi831681.
GrameneiAT5G01770.1; AT5G01770.1; AT5G01770.
KEGGiath:AT5G01770.

Organism-specific databases

TAIRiAT5G01770.

Phylogenomic databases

eggNOGiKOG1517. Eukaryota.
ENOG410XQKJ. LUCA.
InParanoidiQ9LZW9.
KOiK07204.
OMAiESCLEAN.

Enzyme and pathway databases

ReactomeiR-ATH-3371571. HSF1-dependent transactivation.

Miscellaneous databases

PROiQ9LZW9.

Gene expression databases

GenevisibleiQ9LZW9. AT.

Family and domain databases

Gene3Di1.25.10.10. 1 hit.
2.130.10.10. 1 hit.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR004083. Raptor.
IPR029347. Raptor_N.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PANTHERiPTHR12848. PTHR12848. 1 hit.
PfamiPF14538. Raptor_N. 1 hit.
[Graphical view]
SMARTiSM01302. Raptor_N. 1 hit.
SM00320. WD40. 6 hits.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.
SSF50978. SSF50978. 1 hit.
PROSITEiPS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
    Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.
    , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
    Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "An Arabidopsis homolog of RAPTOR/KOG1 is essential for early embryo development."
    Deprost D., Truong H.N., Robaglia C., Meyer C.
    Biochem. Biophys. Res. Commun. 326:844-850(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY, DISRUPTION PHENOTYPE.
  4. "The Arabidopsis AtRaptor genes are essential for post-embryonic plant growth."
    Anderson G.H., Veit B., Hanson M.R.
    BMC Biol. 3:12-12(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: DISRUPTION PHENOTYPE.

Entry informationi

Entry nameiRTOR2_ARATH
AccessioniPrimary (citable) accession number: Q9LZW9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 31, 2011
Last sequence update: May 31, 2011
Last modified: May 11, 2016
This is version 121 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.