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Protein

Mannan endo-1,4-beta-mannosidase 6

Gene

MAN6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Random hydrolysis of (1->4)-beta-D-mannosidic linkages in mannans, galactomannans and glucomannans.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei219Proton donorBy similarity1
Active sitei339NucleophileBy similarity1

GO - Molecular functioni

GO - Biological processi

  • mannan catabolic process Source: GO_Central
  • seed germination Source: TAIR

Keywordsi

Molecular functionGlycosidase, Hydrolase

Enzyme and pathway databases

BioCyciARA:AT5G01930-MONOMER
BRENDAi3.2.1.78 399

Protein family/group databases

CAZyiGH5 Glycoside Hydrolase Family 5

Names & Taxonomyi

Protein namesi
Recommended name:
Mannan endo-1,4-beta-mannosidase 6 (EC:3.2.1.78)
Alternative name(s):
Beta-mannanase 6
Endo-beta-1,4-mannanase 6
Short name:
AtMAN6
Gene namesi
Name:MAN6
Ordered Locus Names:At5g01930
ORF Names:T20L15.200
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G01930
TAIRilocus:2180987 AT5G01930

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 26Sequence analysisAdd BLAST26
ChainiPRO_000027747927 – 448Mannan endo-1,4-beta-mannosidase 6Add BLAST422

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi79N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi164N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi169N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi202N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi350N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi367N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi435N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ9LZV3
PRIDEiQ9LZV3

Expressioni

Tissue specificityi

Ubiquitous.1 Publication

Gene expression databases

ExpressionAtlasiQ9LZV3 baseline and differential
GenevisibleiQ9LZV3 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G01930.1

Structurei

3D structure databases

ProteinModelPortaliQ9LZV3
SMRiQ9LZV3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IG6D Eukaryota
COG3934 LUCA
HOGENOMiHOG000169952
InParanoidiQ9LZV3
KOiK19355
OMAiKVLRTWG
OrthoDBiEOG09360BHK
PhylomeDBiQ9LZV3

Family and domain databases

InterProiView protein in InterPro
IPR001547 Glyco_hydro_5
IPR017853 Glycoside_hydrolase_SF
PfamiView protein in Pfam
PF00150 Cellulase, 1 hit
SUPFAMiSSF51445 SSF51445, 1 hit
PROSITEiView protein in PROSITE
PS00014 ER_TARGET, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LZV3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKDQLGFRIV LCSAVFIILT QNRALADLDS ESHEVNSESV GEEQWEMVQR
60 70 80 90 100
KGMQFTLNGQ PFYVNGFNTY WMMTLAADNS TRGKVTEVFQ QASAVGMTVG
110 120 130 140 150
RTWAFNDGQW RALQKSPSVY DEEVFKALDF VLSEARKYKI RLILSLVNNW
160 170 180 190 200
DAYGGKAQYV KWGNASGLNL TSDDDFFTNP TLRNFYQSHV RTVLNRVNTF
210 220 230 240 250
TNITYKNDPT IFAWELMNEP RCPSDPSGDK LQSWIQEMAV FVKSLDAKHL
260 270 280 290 300
VEIGLEGFYG PSAPARTRFN PNPYAAQVGT DFIRNNQVLG IDFASVHVYP
310 320 330 340 350
DSWISPAVSN SFLEFTSSWM QAHVEDAEMY LGMPVLFTEF GVSAHDPGFN
360 370 380 390 400
TSFRDMMLNT VYKMTLNSTR KGGAGAGSLV WQVFPQGAEF MDDGYAVYLT
410 420 430 440
RAHTASKIIS LQSKRLAIFN SLCSWRCRWG CKKKNQTALD ALLSHDEL
Length:448
Mass (Da):50,622
Last modified:October 1, 2000 - v1
Checksum:i977B341312A54D7D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL162351 Genomic DNA Translation: CAB82763.1
CP002688 Genomic DNA Translation: AED90411.1
BT005831 mRNA Translation: AAO64766.1
AK227325 mRNA Translation: BAE99339.1
PIRiT48214
RefSeqiNP_195813.1, NM_120271.4
UniGeneiAt.23739
At.25601

Genome annotation databases

EnsemblPlantsiAT5G01930.1; AT5G01930.1; AT5G01930
GeneIDi831699
GrameneiAT5G01930.1; AT5G01930.1; AT5G01930
KEGGiath:AT5G01930

Similar proteinsi

Entry informationi

Entry nameiMAN6_ARATH
AccessioniPrimary (citable) accession number: Q9LZV3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: October 1, 2000
Last modified: April 25, 2018
This is version 109 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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