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Protein

Expansin-like A3

Gene

EXLA3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Expansin-like A3
Short name:
At-EXPL3
Short name:
AtEXLA3
Short name:
AtEXPL3
Alternative name(s):
Ath-ExpBeta-2.3
Gene namesi
Name:EXLA3
Synonyms:EXPL3
Ordered Locus Names:At3g45960
ORF Names:F16L2_170
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G45960
TAIRilocus:2077167 AT3G45960

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 20Sequence analysisAdd BLAST20
ChainiPRO_000000871421 – 263Expansin-like A3Add BLAST243

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi99N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi102N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ9LZT5

Expressioni

Gene expression databases

ExpressionAtlasiQ9LZT5 baseline and differential
GenevisibleiQ9LZT5 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G45960.2

Structurei

3D structure databases

ProteinModelPortaliQ9LZT5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini41 – 147Expansin-like EG45PROSITE-ProRule annotationAdd BLAST107
Domaini161 – 243Expansin-like CBDPROSITE-ProRule annotationAdd BLAST83

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IKFZ Eukaryota
ENOG410YDTV LUCA
HOGENOMiHOG000220794
InParanoidiQ9LZT5
OMAiCAHRSTA
OrthoDBiEOG09360L4P
PhylomeDBiQ9LZT5

Family and domain databases

Gene3Di2.40.40.10, 1 hit
2.60.40.760, 1 hit
InterProiView protein in InterPro
IPR007118 Expan_Lol_pI
IPR007112 Expansin/allergen_DPBB_dom
IPR007117 Expansin_CBD
IPR036749 Expansin_CBD_sf
IPR009009 RlpA-like_DPBB
IPR036908 RlpA-like_sf
PfamiView protein in Pfam
PF03330 DPBB_1, 1 hit
PF01357 Pollen_allerg_1, 1 hit
PRINTSiPR01225 EXPANSNFAMLY
SMARTiView protein in SMART
SM00837 DPBB_1, 1 hit
SUPFAMiSSF49590 SSF49590, 1 hit
SSF50685 SSF50685, 1 hit
PROSITEiView protein in PROSITE
PS50843 EXPANSIN_CBD, 1 hit
PS50842 EXPANSIN_EG45, 1 hit

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9LZT5-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MRSFLYLIVV IFLFSSSVNA CDRCLHRSKA SYFSSASALS SGACAYGPMA
60 70 80 90 100
TSFFAGHIAA AIPSIYKDGA GCGACFQVRC KNPKLCNSKG TIVMVTDLNT
110 120 130 140 150
SNQTDLVLSS RAFRAMAKPV VGVDKYLLKQ GIVDVEYQRV PCNYGKRNLN
160 170 180 190 200
VRVEEASKKP NYLAIKLLYQ GGQTEVVGID IAPVGSSQWS YMSRSHGAVW
210 220 230 240 250
ATDKVPTGAL QFKFTVTGGY DGKTVWSKRV LPANWNSGRI YDAGVQITDI
260
AQEGCDTCGH IWN
Note: No experimental confirmation available.
Length:263
Mass (Da):28,559
Last modified:October 1, 2000 - v1
Checksum:i5D8A2048FEA7C292
GO
Isoform 2 (identifier: Q9LZT5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-48: Missing.

Note: May be due to an intron retention.
Show »
Length:215
Mass (Da):23,392
Checksum:iEF62410F92AC7302
GO

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_0165361 – 48Missing in isoform 2. 2 PublicationsAdd BLAST48

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL162459 Genomic DNA Translation: CAB82820.1
CP002686 Genomic DNA Translation: AEE78094.1
CP002686 Genomic DNA Translation: AEE78095.1
AK117110 mRNA Translation: BAC41789.1
BT025273 mRNA Translation: ABF19026.1
PIRiT47536
RefSeqiNP_001030815.1, NM_001035738.3 [Q9LZT5-1]
NP_190182.2, NM_114465.4 [Q9LZT5-2]
UniGeneiAt.66472

Genome annotation databases

EnsemblPlantsiAT3G45960.1; AT3G45960.1; AT3G45960 [Q9LZT5-2]
AT3G45960.2; AT3G45960.2; AT3G45960 [Q9LZT5-1]
GeneIDi823739
GrameneiAT3G45960.1; AT3G45960.1; AT3G45960 [Q9LZT5-2]
AT3G45960.2; AT3G45960.2; AT3G45960 [Q9LZT5-1]
KEGGiath:AT3G45960

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiEXLA3_ARATH
AccessioniPrimary (citable) accession number: Q9LZT5
Secondary accession number(s): Q1LYV3, Q8GZA5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 5, 2002
Last sequence update: October 1, 2000
Last modified: April 25, 2018
This is version 123 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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