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Protein

Expansin-like A3

Gene

EXLA3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Expansin-like A3
Short name:
At-EXPL3
Short name:
AtEXLA3
Short name:
AtEXPL3
Alternative name(s):
Ath-ExpBeta-2.3
Gene namesi
Name:EXLA3
Synonyms:EXPL3
Ordered Locus Names:At3g45960
ORF Names:F16L2_170
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G45960.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: TAIR
  • extracellular region Source: UniProtKB-SubCell
  • membrane Source: TAIR
  • plant-type cell wall Source: TAIR
  • plasmodesma Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2020Sequence analysisAdd
BLAST
Chaini21 – 263243Expansin-like A3PRO_0000008714Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi99 – 991N-linked (GlcNAc...)Sequence analysis
Glycosylationi102 – 1021N-linked (GlcNAc...)Sequence analysis

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ9LZT5.
PRIDEiQ9LZT5.

Expressioni

Gene expression databases

ExpressionAtlasiQ9LZT5. baseline and differential.
GenevisibleiQ9LZT5. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G45960.2.

Structurei

3D structure databases

ProteinModelPortaliQ9LZT5.
SMRiQ9LZT5. Positions 40-246.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini41 – 147107Expansin-like EG45PROSITE-ProRule annotationAdd
BLAST
Domaini161 – 24383Expansin-like CBDPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 expansin-like CBD domain.PROSITE-ProRule annotation
Contains 1 expansin-like EG45 domain.PROSITE-ProRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IKFZ. Eukaryota.
ENOG410YDTV. LUCA.
HOGENOMiHOG000220794.
InParanoidiQ9LZT5.
OMAiDEELCAT.
OrthoDBiEOG09360L4P.
PhylomeDBiQ9LZT5.

Family and domain databases

Gene3Di2.40.40.10. 1 hit.
2.60.40.760. 1 hit.
InterProiIPR007118. Expan_Lol_pI.
IPR007112. Expansin/allergen_DPBB_dom.
IPR007117. Expansin_CBD.
IPR009009. RlpA-like_DPBB.
[Graphical view]
PfamiPF03330. DPBB_1. 1 hit.
PF01357. Pollen_allerg_1. 1 hit.
[Graphical view]
PRINTSiPR01225. EXPANSNFAMLY.
SMARTiSM00837. DPBB_1. 1 hit.
[Graphical view]
SUPFAMiSSF49590. SSF49590. 1 hit.
SSF50685. SSF50685. 1 hit.
PROSITEiPS50843. EXPANSIN_CBD. 1 hit.
PS50842. EXPANSIN_EG45. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q9LZT5-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MRSFLYLIVV IFLFSSSVNA CDRCLHRSKA SYFSSASALS SGACAYGPMA
60 70 80 90 100
TSFFAGHIAA AIPSIYKDGA GCGACFQVRC KNPKLCNSKG TIVMVTDLNT
110 120 130 140 150
SNQTDLVLSS RAFRAMAKPV VGVDKYLLKQ GIVDVEYQRV PCNYGKRNLN
160 170 180 190 200
VRVEEASKKP NYLAIKLLYQ GGQTEVVGID IAPVGSSQWS YMSRSHGAVW
210 220 230 240 250
ATDKVPTGAL QFKFTVTGGY DGKTVWSKRV LPANWNSGRI YDAGVQITDI
260
AQEGCDTCGH IWN
Note: No experimental confirmation available.
Length:263
Mass (Da):28,559
Last modified:October 1, 2000 - v1
Checksum:i5D8A2048FEA7C292
GO
Isoform 2 (identifier: Q9LZT5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-48: Missing.

Note: May be due to an intron retention.
Show »
Length:215
Mass (Da):23,392
Checksum:iEF62410F92AC7302
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 4848Missing in isoform 2. 2 PublicationsVSP_016536Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL162459 Genomic DNA. Translation: CAB82820.1.
CP002686 Genomic DNA. Translation: AEE78094.1.
CP002686 Genomic DNA. Translation: AEE78095.1.
AK117110 mRNA. Translation: BAC41789.1.
BT025273 mRNA. Translation: ABF19026.1.
PIRiT47536.
RefSeqiNP_001030815.1. NM_001035738.2. [Q9LZT5-1]
NP_190182.2. NM_114465.3. [Q9LZT5-2]
UniGeneiAt.66472.

Genome annotation databases

EnsemblPlantsiAT3G45960.2; AT3G45960.2; AT3G45960. [Q9LZT5-1]
GeneIDi823739.
KEGGiath:AT3G45960.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Web resourcesi

EXPANSIN homepage

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL162459 Genomic DNA. Translation: CAB82820.1.
CP002686 Genomic DNA. Translation: AEE78094.1.
CP002686 Genomic DNA. Translation: AEE78095.1.
AK117110 mRNA. Translation: BAC41789.1.
BT025273 mRNA. Translation: ABF19026.1.
PIRiT47536.
RefSeqiNP_001030815.1. NM_001035738.2. [Q9LZT5-1]
NP_190182.2. NM_114465.3. [Q9LZT5-2]
UniGeneiAt.66472.

3D structure databases

ProteinModelPortaliQ9LZT5.
SMRiQ9LZT5. Positions 40-246.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G45960.2.

Proteomic databases

PaxDbiQ9LZT5.
PRIDEiQ9LZT5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G45960.2; AT3G45960.2; AT3G45960. [Q9LZT5-1]
GeneIDi823739.
KEGGiath:AT3G45960.

Organism-specific databases

TAIRiAT3G45960.

Phylogenomic databases

eggNOGiENOG410IKFZ. Eukaryota.
ENOG410YDTV. LUCA.
HOGENOMiHOG000220794.
InParanoidiQ9LZT5.
OMAiDEELCAT.
OrthoDBiEOG09360L4P.
PhylomeDBiQ9LZT5.

Miscellaneous databases

PROiQ9LZT5.

Gene expression databases

ExpressionAtlasiQ9LZT5. baseline and differential.
GenevisibleiQ9LZT5. AT.

Family and domain databases

Gene3Di2.40.40.10. 1 hit.
2.60.40.760. 1 hit.
InterProiIPR007118. Expan_Lol_pI.
IPR007112. Expansin/allergen_DPBB_dom.
IPR007117. Expansin_CBD.
IPR009009. RlpA-like_DPBB.
[Graphical view]
PfamiPF03330. DPBB_1. 1 hit.
PF01357. Pollen_allerg_1. 1 hit.
[Graphical view]
PRINTSiPR01225. EXPANSNFAMLY.
SMARTiSM00837. DPBB_1. 1 hit.
[Graphical view]
SUPFAMiSSF49590. SSF49590. 1 hit.
SSF50685. SSF50685. 1 hit.
PROSITEiPS50843. EXPANSIN_CBD. 1 hit.
PS50842. EXPANSIN_EG45. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiEXLA3_ARATH
AccessioniPrimary (citable) accession number: Q9LZT5
Secondary accession number(s): Q1LYV3, Q8GZA5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 5, 2002
Last sequence update: October 1, 2000
Last modified: September 7, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.