Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Expansin-like A1

Gene

EXLA1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Expansin-like A1
Short name:
At-EXPL1
Short name:
AtEXLA1
Short name:
AtEXPL1
Alternative name(s):
Ath-ExpBeta-2.1
Gene namesi
Name:EXLA1
Synonyms:EXPL1
Ordered Locus Names:At3g45970
ORF Names:F16L2_180
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G45970.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei42 – 62HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

  • cell wall Source: TAIR
  • extracellular region Source: InterPro
  • Golgi apparatus Source: TAIR
  • integral component of membrane Source: UniProtKB-KW
  • membrane Source: GO_Central
  • plant-type cell wall Source: TAIR
  • plasmodesma Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 20Sequence analysisAdd BLAST20
ChainiPRO_000000871221 – 265Expansin-like A1Add BLAST245

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi99N-linked (GlcNAc...)Sequence analysis1
Glycosylationi102N-linked (GlcNAc...)Sequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ9LZT4.

Expressioni

Gene expression databases

GenevisibleiQ9LZT4. AT.

Interactioni

Protein-protein interaction databases

BioGridi9060. 3 interactors.
IntActiQ9LZT4. 2 interactors.
STRINGi3702.AT3G45970.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LZT4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini41 – 147Expansin-like EG45PROSITE-ProRule annotationAdd BLAST107
Domaini161 – 244Expansin-like CBDPROSITE-ProRule annotationAdd BLAST84

Sequence similaritiesi

Contains 1 expansin-like CBD domain.PROSITE-ProRule annotation
Contains 1 expansin-like EG45 domain.PROSITE-ProRule annotation

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IKFZ. Eukaryota.
ENOG410YDTV. LUCA.
HOGENOMiHOG000220794.
InParanoidiQ9LZT4.
OMAiSPCDDGS.
OrthoDBiEOG09360L4P.
PhylomeDBiQ9LZT4.

Family and domain databases

Gene3Di2.40.40.10. 1 hit.
2.60.40.760. 1 hit.
InterProiIPR007118. Expan_Lol_pI.
IPR007112. Expansin/allergen_DPBB_dom.
IPR007117. Expansin_CBD.
IPR009009. RlpA-like_DPBB.
[Graphical view]
PfamiPF03330. DPBB_1. 1 hit.
PF01357. Pollen_allerg_1. 1 hit.
[Graphical view]
PRINTSiPR01225. EXPANSNFAMLY.
SMARTiSM00837. DPBB_1. 1 hit.
[Graphical view]
SUPFAMiSSF49590. SSF49590. 1 hit.
SSF50685. SSF50685. 1 hit.
PROSITEiPS50843. EXPANSIN_CBD. 1 hit.
PS50842. EXPANSIN_EG45. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LZT4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGSFLFLIVV IFLFSSSVNA CDRCLHRSKA AYFSSASALS SGACAYGSMA
60 70 80 90 100
TSFFAGHIAA AIPSIYKDGA GCGACFQVRC KNPKLCSTKG TIVMITDLNK
110 120 130 140 150
SNQTDLVLSS RAFRAMAKPI VGADKDLLKQ GIVDIEYQRV PCDYGNKNMN
160 170 180 190 200
VRVEEASKKP NYLEIKLLYQ GGQTEVVSID IAQVGSSPNW GYMTRSHGAV
210 220 230 240 250
WVTDKVPTGA IQFRFVVTGG YDGKMIWSQS VLPSNWEAGK IYDAGVQITD
260
IAQEGCDPCD AHIWN
Length:265
Mass (Da):28,702
Last modified:October 1, 2000 - v1
Checksum:i1FE20236C24E0166
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL162459 Genomic DNA. Translation: CAB82821.1.
CP002686 Genomic DNA. Translation: AEE78096.1.
AF378896 mRNA. Translation: AAK55699.1.
AY052745 mRNA. Translation: AAK96459.1.
AY058142 mRNA. Translation: AAL25558.1.
PIRiT47537.
RefSeqiNP_190183.1. NM_114466.1.
UniGeneiAt.4757.
At.71080.

Genome annotation databases

EnsemblPlantsiAT3G45970.1; AT3G45970.1; AT3G45970.
GeneIDi823740.
GrameneiAT3G45970.1; AT3G45970.1; AT3G45970.
KEGGiath:AT3G45970.

Cross-referencesi

Web resourcesi

EXPANSIN homepage

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL162459 Genomic DNA. Translation: CAB82821.1.
CP002686 Genomic DNA. Translation: AEE78096.1.
AF378896 mRNA. Translation: AAK55699.1.
AY052745 mRNA. Translation: AAK96459.1.
AY058142 mRNA. Translation: AAL25558.1.
PIRiT47537.
RefSeqiNP_190183.1. NM_114466.1.
UniGeneiAt.4757.
At.71080.

3D structure databases

ProteinModelPortaliQ9LZT4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi9060. 3 interactors.
IntActiQ9LZT4. 2 interactors.
STRINGi3702.AT3G45970.1.

Proteomic databases

PaxDbiQ9LZT4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G45970.1; AT3G45970.1; AT3G45970.
GeneIDi823740.
GrameneiAT3G45970.1; AT3G45970.1; AT3G45970.
KEGGiath:AT3G45970.

Organism-specific databases

TAIRiAT3G45970.

Phylogenomic databases

eggNOGiENOG410IKFZ. Eukaryota.
ENOG410YDTV. LUCA.
HOGENOMiHOG000220794.
InParanoidiQ9LZT4.
OMAiSPCDDGS.
OrthoDBiEOG09360L4P.
PhylomeDBiQ9LZT4.

Miscellaneous databases

PROiQ9LZT4.

Gene expression databases

GenevisibleiQ9LZT4. AT.

Family and domain databases

Gene3Di2.40.40.10. 1 hit.
2.60.40.760. 1 hit.
InterProiIPR007118. Expan_Lol_pI.
IPR007112. Expansin/allergen_DPBB_dom.
IPR007117. Expansin_CBD.
IPR009009. RlpA-like_DPBB.
[Graphical view]
PfamiPF03330. DPBB_1. 1 hit.
PF01357. Pollen_allerg_1. 1 hit.
[Graphical view]
PRINTSiPR01225. EXPANSNFAMLY.
SMARTiSM00837. DPBB_1. 1 hit.
[Graphical view]
SUPFAMiSSF49590. SSF49590. 1 hit.
SSF50685. SSF50685. 1 hit.
PROSITEiPS50843. EXPANSIN_CBD. 1 hit.
PS50842. EXPANSIN_EG45. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiEXLA1_ARATH
AccessioniPrimary (citable) accession number: Q9LZT4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 5, 2002
Last sequence update: October 1, 2000
Last modified: November 2, 2016
This is version 122 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.