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Protein

Expansin-like A1

Gene

EXLA1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Expansin-like A1
Short name:
At-EXPL1
Short name:
AtEXLA1
Short name:
AtEXPL1
Alternative name(s):
Ath-ExpBeta-2.1
Gene namesi
Name:EXLA1
Synonyms:EXPL1
Ordered Locus Names:At3g45970
ORF Names:F16L2_180
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G45970.
TAIRilocus:2077177. AT3G45970.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei42 – 62HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

  • cell wall Source: TAIR
  • extracellular region Source: InterPro
  • Golgi apparatus Source: TAIR
  • integral component of membrane Source: UniProtKB-KW
  • plant-type cell wall Source: TAIR
  • plasmodesma Source: TAIR

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 20Sequence analysisAdd BLAST20
ChainiPRO_000000871221 – 265Expansin-like A1Add BLAST245

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi99N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi102N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ9LZT4.

Expressioni

Gene expression databases

ExpressionAtlasiQ9LZT4. baseline and differential.
GenevisibleiQ9LZT4. AT.

Interactioni

Protein-protein interaction databases

BioGridi9060. 3 interactors.
IntActiQ9LZT4. 2 interactors.
STRINGi3702.AT3G45970.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LZT4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini41 – 147Expansin-like EG45PROSITE-ProRule annotationAdd BLAST107
Domaini161 – 244Expansin-like CBDPROSITE-ProRule annotationAdd BLAST84

Sequence similaritiesi

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IKFZ. Eukaryota.
ENOG410YDTV. LUCA.
HOGENOMiHOG000220794.
InParanoidiQ9LZT4.
OMAiSPCDDGS.
OrthoDBiEOG09360L4P.
PhylomeDBiQ9LZT4.

Family and domain databases

Gene3Di2.40.40.10. 1 hit.
2.60.40.760. 1 hit.
InterProiView protein in InterPro
IPR007118. Expan_Lol_pI.
IPR007112. Expansin/allergen_DPBB_dom.
IPR007117. Expansin_CBD.
IPR009009. RlpA-like_DPBB.
PfamiView protein in Pfam
PF03330. DPBB_1. 1 hit.
PF01357. Pollen_allerg_1. 1 hit.
PRINTSiPR01225. EXPANSNFAMLY.
SMARTiView protein in SMART
SM00837. DPBB_1. 1 hit.
SUPFAMiSSF49590. SSF49590. 1 hit.
SSF50685. SSF50685. 1 hit.
PROSITEiView protein in PROSITE
PS50843. EXPANSIN_CBD. 1 hit.
PS50842. EXPANSIN_EG45. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LZT4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGSFLFLIVV IFLFSSSVNA CDRCLHRSKA AYFSSASALS SGACAYGSMA
60 70 80 90 100
TSFFAGHIAA AIPSIYKDGA GCGACFQVRC KNPKLCSTKG TIVMITDLNK
110 120 130 140 150
SNQTDLVLSS RAFRAMAKPI VGADKDLLKQ GIVDIEYQRV PCDYGNKNMN
160 170 180 190 200
VRVEEASKKP NYLEIKLLYQ GGQTEVVSID IAQVGSSPNW GYMTRSHGAV
210 220 230 240 250
WVTDKVPTGA IQFRFVVTGG YDGKMIWSQS VLPSNWEAGK IYDAGVQITD
260
IAQEGCDPCD AHIWN
Length:265
Mass (Da):28,702
Last modified:October 1, 2000 - v1
Checksum:i1FE20236C24E0166
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL162459 Genomic DNA. Translation: CAB82821.1.
CP002686 Genomic DNA. Translation: AEE78096.1.
AF378896 mRNA. Translation: AAK55699.1.
AY052745 mRNA. Translation: AAK96459.1.
AY058142 mRNA. Translation: AAL25558.1.
PIRiT47537.
RefSeqiNP_190183.1. NM_114466.1.
UniGeneiAt.4757.
At.71080.

Genome annotation databases

EnsemblPlantsiAT3G45970.1; AT3G45970.1; AT3G45970.
GeneIDi823740.
GrameneiAT3G45970.1; AT3G45970.1; AT3G45970.
KEGGiath:AT3G45970.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiEXLA1_ARATH
AccessioniPrimary (citable) accession number: Q9LZT4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 5, 2002
Last sequence update: October 1, 2000
Last modified: July 5, 2017
This is version 127 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families