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Protein

Expansin-like A1

Gene

EXLA1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Expansin-like A1
Short name:
At-EXPL1
Short name:
AtEXLA1
Short name:
AtEXPL1
Alternative name(s):
Ath-ExpBeta-2.1
Gene namesi
Name:EXLA1
Synonyms:EXPL1
Ordered Locus Names:At3g45970
ORF Names:F16L2_180
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G45970
TAIRilocus:2077177 AT3G45970

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei42 – 62HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 20Sequence analysisAdd BLAST20
ChainiPRO_000000871221 – 265Expansin-like A1Add BLAST245

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi99N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi102N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ9LZT4
PRIDEiQ9LZT4

Expressioni

Gene expression databases

ExpressionAtlasiQ9LZT4 baseline and differential
GenevisibleiQ9LZT4 AT

Interactioni

Protein-protein interaction databases

BioGridi9060, 3 interactors
IntActiQ9LZT4, 2 interactors
STRINGi3702.AT3G45970.1

Structurei

3D structure databases

ProteinModelPortaliQ9LZT4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini41 – 147Expansin-like EG45PROSITE-ProRule annotationAdd BLAST107
Domaini161 – 244Expansin-like CBDPROSITE-ProRule annotationAdd BLAST84

Sequence similaritiesi

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IKFZ Eukaryota
ENOG410YDTV LUCA
HOGENOMiHOG000220794
InParanoidiQ9LZT4
OMAiSPCDDGS
OrthoDBiEOG09360L4P
PhylomeDBiQ9LZT4

Family and domain databases

Gene3Di2.40.40.10, 1 hit
2.60.40.760, 1 hit
InterProiView protein in InterPro
IPR007118 Expan_Lol_pI
IPR007112 Expansin/allergen_DPBB_dom
IPR007117 Expansin_CBD
IPR036749 Expansin_CBD_sf
IPR009009 RlpA-like_DPBB
IPR036908 RlpA-like_sf
PfamiView protein in Pfam
PF03330 DPBB_1, 1 hit
PF01357 Pollen_allerg_1, 1 hit
PRINTSiPR01225 EXPANSNFAMLY
SMARTiView protein in SMART
SM00837 DPBB_1, 1 hit
SUPFAMiSSF49590 SSF49590, 1 hit
SSF50685 SSF50685, 1 hit
PROSITEiView protein in PROSITE
PS50843 EXPANSIN_CBD, 1 hit
PS50842 EXPANSIN_EG45, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LZT4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGSFLFLIVV IFLFSSSVNA CDRCLHRSKA AYFSSASALS SGACAYGSMA
60 70 80 90 100
TSFFAGHIAA AIPSIYKDGA GCGACFQVRC KNPKLCSTKG TIVMITDLNK
110 120 130 140 150
SNQTDLVLSS RAFRAMAKPI VGADKDLLKQ GIVDIEYQRV PCDYGNKNMN
160 170 180 190 200
VRVEEASKKP NYLEIKLLYQ GGQTEVVSID IAQVGSSPNW GYMTRSHGAV
210 220 230 240 250
WVTDKVPTGA IQFRFVVTGG YDGKMIWSQS VLPSNWEAGK IYDAGVQITD
260
IAQEGCDPCD AHIWN
Length:265
Mass (Da):28,702
Last modified:October 1, 2000 - v1
Checksum:i1FE20236C24E0166
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL162459 Genomic DNA Translation: CAB82821.1
CP002686 Genomic DNA Translation: AEE78096.1
AF378896 mRNA Translation: AAK55699.1
AY052745 mRNA Translation: AAK96459.1
AY058142 mRNA Translation: AAL25558.1
PIRiT47537
RefSeqiNP_190183.1, NM_114466.1
UniGeneiAt.4757
At.71080

Genome annotation databases

EnsemblPlantsiAT3G45970.1; AT3G45970.1; AT3G45970
GeneIDi823740
GrameneiAT3G45970.1; AT3G45970.1; AT3G45970
KEGGiath:AT3G45970

Similar proteinsi

Entry informationi

Entry nameiEXLA1_ARATH
AccessioniPrimary (citable) accession number: Q9LZT4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 5, 2002
Last sequence update: October 1, 2000
Last modified: May 23, 2018
This is version 131 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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