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Q9LYR4 (Q9LYR4_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 70. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative transaldolase EMBL AAL07145.1
Submitted name:
Transaldolase EMBL AED91892.1
Submitted name:
Transaldolase-like protein EMBL CAB87149.1
Gene names
Name:T22N19_70 EMBL CAB87149.1
Ordered Locus Names:At5g13420 TAIR At5g13420
ORF Names:AT5G13420 EMBL AED91892.1
OrganismArabidopsis thaliana (Mouse-ear cress) EMBL CAB87149.1
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length438 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q9LYR4 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: 0F4FF497A6F0FA2C

FASTA43847,699
        10         20         30         40         50         60 
MATISNLANL PRATCVDSKS SSSSSVLPRS FVNFRALNAK LSSSQLSLRY NQRSIPSLSV 

        70         80         90        100        110        120 
RCSVSGGNGT AGKRTTLHDL YEKEGQSPWY DNLCRPVTDL LPLIARGVRG VTSNPAIFQK 

       130        140        150        160        170        180 
AISTSNAYND QFRTLVESGK DIESAYWELV VKDIQDACKL FEPIYDQTEG ADGYVSVEVS 

       190        200        210        220        230        240 
PRLADDTQGT VEAAKYLSKV VNRRNVYIKI PATAPCIPSI RDVIAAGISV NVTLIFSIAR 

       250        260        270        280        290        300 
YEAVIDAYLD GLEASGLDDL SRVTSVASFF VSRVDTLMDK MLEQIGTPEA LDLRGKAAVA 

       310        320        330        340        350        360 
QAALAYKLYQ QKFSGPRWEA LVKKGAKKQR LLWASTSVKN PAYSDTLYVA PLIGPDTVST 

       370        380        390        400        410        420 
MPDQALEAFA DHGIVKRTID ANVSEAEGIY SALEKLGIDW NKVGEQLEDE GVDSFKKSFE 

       430 
SLLGTLQDKA NTLKLASH

« Hide

References

« Hide 'large scale' references
[1]"Full-length messenger RNA sequences greatly improve genome annotation."
Haas B.J., Volfovsky N., Town C.D., Troukhan M., Alexandrov N., Feldmann K.A., Flavell R.B., White O., Salzberg S.L.
Genome Biol. 3:RESEARCH0029-RESEARCH0029(2002) [PubMed: 12093376] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Features of Arabidopsis genes and genome discovered using full-length cDNAs."
Alexandrov N.A., Troukhan M.E., Brover V.V., Flavell R.B., Feldmann K.A.
Plant Mol. Biol. 60:71-87(2006)
Cited for: NUCLEOTIDE SEQUENCE.
[3]"Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
Kazusa DNA Research Institute, Cold Spring Harbor and Washington University in St Louis Sequencing Consortium, European Union Arabidopsis Genome Sequencing Consortium
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K. expand/collapse author list , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
Nature 408:823-826(2000) [PubMed: 11130714] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[4]"Arabidopsis Full Length cDNA Clones."
Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K., Goldsmith A.D., Lee J.M., Quach H.L., Toriumi M., Yu G., Bowser L., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T. expand/collapse author list , Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.
Submitted (SEP-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Arabidopsis Open Reading Frame (ORF) Clones."
Yamada K., Banh J., Chan M.M., Chang C.H., Chang E., Dale J.M., Deng J.M., Goldsmith A.D., Lee J.M., Onodera C.S., Quach H.L., Tang C., Toriumi M., Wu H.C., Yamamura Y., Yu G., Bowser L., Carninci P. expand/collapse author list , Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M., Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.
Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[6]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[7]EU Arabidopsis sequencing project
Submitted (APR-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[8]Bevan M., Hilbert H., Braun M., Holzer E., Brandt A., Duesterhoeft A., Bancroft I., Mewes H.W., Rudd S., Lemcke K., Mayer K.F.X.
Submitted (APR-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[9]Brover V., Troukhan M., Alexandrov N., Lu Y.-P., Flavell R., Feldmann K.
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AY056296 mRNA. Translation: AAL07145.1.
AY114075 mRNA. Translation: AAM45123.1.
AY087135 mRNA. Translation: AAM64693.1.
CP002688 Genomic DNA. Translation: AED91892.1.
AL163572 Genomic DNA. Translation: CAB87149.1.
IPIIPI00531555.
PIRT48589.
RefSeqNP_196846.1. NM_121345.2.
UniGeneAt.22457.

3D structure databases

ProteinModelPortalQ9LYR4.
SMRQ9LYR4. Positions 75-426.
ModBaseSearch...

Protein-protein interaction databases

IntActQ9LYR4. 1 interaction.
STRINGQ9LYR4.

Proteomic databases

PRIDEQ9LYR4.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT5G13420.1; AT5G13420.1; AT5G13420.
GeneID831183.
GenomeReviewsGene locus AT5G13420 in contig BA000015_GR.
KEGGath:AT5G13420.
NMPDRfig|3702.1.peg.23460.

Organism-specific databases

TAIRAt5g13420.

Phylogenomic databases

eggNOGKOG2772.
GeneTreeEPGT00050000019306.
HOGENOMHBG321149.
InParanoidQ9LYR4.
OMAMPEKTLD.
PhylomeDBQ9LYR4.
ProtClustDBCLSN2687015.

Gene expression databases

ArrayExpressQ9LYR4.
GenevestigatorQ9LYR4.

Family and domain databases

HAMAPMF_00493. Transaldolase_2.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR001585. Transaldolase.
IPR004732. Transaldolase_2.
IPR018225. Transaldolase_AS.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK00616.
PANTHERPTHR10683. Transaldolase. 1 hit.
PfamPF00923. Transaldolase. 1 hit.
[Graphical view]
PIRSFPIRSF036915. Trnald_Bac_Plnt. 1 hit.
TIGRFAMsTIGR00876. Tal_mycobact. 1 hit.
PROSITEPS01054. TRANSALDOLASE_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ9LYR4_ARATH
AccessionPrimary (citable) accession number: Q9LYR4
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: January 25, 2012
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info