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Q9LYQ2

- LAC13_ARATH

UniProt

Q9LYQ2 - LAC13_ARATH

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Protein
Laccase-13
Gene
LAC13, At5g07130, T28J14.70
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

Lignin degradation and detoxification of lignin-derived products By similarity.

Catalytic activityi

4 benzenediol + O2 = 4 benzosemiquinone + 2 H2O.

Cofactori

Binds 4 copper ions per monomer By similarity.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi79 – 791Copper 1; type 2 By similarity
Metal bindingi81 – 811Copper 2; type 3 By similarity
Metal bindingi124 – 1241Copper 2; type 3 By similarity
Metal bindingi126 – 1261Copper 3; type 3 By similarity
Metal bindingi470 – 4701Copper 4; type 1 By similarity
Metal bindingi473 – 4731Copper 1; type 2 By similarity
Metal bindingi475 – 4751Copper 3; type 3 By similarity
Metal bindingi532 – 5321Copper 3; type 3 By similarity
Metal bindingi533 – 5331Copper 4; type 1 By similarity
Metal bindingi534 – 5341Copper 2; type 3 By similarity
Metal bindingi538 – 5381Copper 4; type 1 By similarity

GO - Molecular functioni

  1. copper ion binding Source: InterPro
  2. hydroquinone:oxygen oxidoreductase activity Source: UniProtKB-EC

GO - Biological processi

  1. lignin catabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Biological processi

Lignin degradation

Keywords - Ligandi

Copper, Metal-binding

Enzyme and pathway databases

BioCyciARA:AT5G07130-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Laccase-13 (EC:1.10.3.2)
Alternative name(s):
Benzenediol:oxygen oxidoreductase 13
Diphenol oxidase 13
Urishiol oxidase 13
Gene namesi
Name:LAC13
Ordered Locus Names:At5g07130
ORF Names:T28J14.70
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 5

Organism-specific databases

TAIRiAT5G07130.

Subcellular locationi

Secretedextracellular spaceapoplast Reviewed prediction

GO - Cellular componenti

  1. apoplast Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Apoplast, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121 Reviewed prediction
Add
BLAST
Chaini22 – 569548Laccase-13
PRO_0000283641Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi75 – 751N-linked (GlcNAc...) Reviewed prediction
Glycosylationi186 – 1861N-linked (GlcNAc...) Reviewed prediction
Glycosylationi296 – 2961N-linked (GlcNAc...) Reviewed prediction
Glycosylationi330 – 3301N-linked (GlcNAc...) Reviewed prediction
Glycosylationi381 – 3811N-linked (GlcNAc...) Reviewed prediction
Glycosylationi391 – 3911N-linked (GlcNAc...) Reviewed prediction
Glycosylationi432 – 4321N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Glycoprotein

Expressioni

Tissue specificityi

Mostly expressed in roots. Also detected in leaves, stems and flowers but not in siliques.1 Publication

Gene expression databases

GenevestigatoriQ9LYQ2.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G07130.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ9LYQ2.
SMRiQ9LYQ2. Positions 39-548.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini29 – 145117Plastocyanin-like 1
Add
BLAST
Domaini157 – 308152Plastocyanin-like 2
Add
BLAST
Domaini418 – 553136Plastocyanin-like 3
Add
BLAST

Sequence similaritiesi

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiCOG2132.
HOGENOMiHOG000241916.
InParanoidiQ9LYQ2.
OMAiKNALNER.
PhylomeDBiQ9LYQ2.

Family and domain databases

Gene3Di2.60.40.420. 3 hits.
InterProiIPR001117. Cu-oxidase.
IPR011706. Cu-oxidase_2.
IPR011707. Cu-oxidase_3.
IPR002355. Cu_oxidase_Cu_BS.
IPR008972. Cupredoxin.
IPR017761. Laccase.
[Graphical view]
PfamiPF00394. Cu-oxidase. 1 hit.
PF07731. Cu-oxidase_2. 1 hit.
PF07732. Cu-oxidase_3. 1 hit.
[Graphical view]
SUPFAMiSSF49503. SSF49503. 3 hits.
TIGRFAMsiTIGR03389. laccase. 1 hit.
PROSITEiPS00079. MULTICOPPER_OXIDASE1. 1 hit.
PS00080. MULTICOPPER_OXIDASE2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LYQ2-1 [UniParc]FASTAAdd to Basket

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MEQLRPFFLL LAIFVASLVN AEVHFHEFVI QETPVKRLCR VHNSITVNGQ    50
FPGPTLEVRN GDSLVITAIN KARYNISLHW HGIRQMRNPW ADGPEYITQC 100
PIQPGGSYTY RFTMEDQEGT LWWHAHSRWL RATVYGALII RPPLSSPHYP 150
FPVIPKREIT LLLGEWWDRN PMDVLNLAQF TGAAPNISDA FTINGQPGDL 200
YRCSSQETLR FLVGSGEIVL LRVINSALNQ ELFFGVANHK LTVVAADASY 250
TKPFSTNVIM LGPGQTTDVL LTADQPPAHY YMAAHAYNSA NAAFDNTTTT 300
AILKYKDASC VTLQAKSQAR AIPAQLPGFN DTATAAAFTA QMKSPSKVKV 350
PLEIDENLFF TVGLGLFNCP TPNTQRCQGP NGTRFTASIN NVSFVFPKQN 400
SIMQAYYQGT PTGVFTTDFP PTPPVTFDYT GNVSRGLWQP TRGTKAYKLK 450
FNSQVQIILQ DTSIVTTENH PMHLHGYEFY VVGTGVGNFN PNTDTSSFNL 500
IDPPRRNTIG TPPGGWVAIR FVANNPGAWL MHCHIDSHIF WGLAMVFLVE 550
NGEGHLQSVQ SPPLDLPQC 569
Length:569
Mass (Da):63,145
Last modified:October 1, 2000 - v1
Checksum:iDB618A13E0E2881B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL163652 Genomic DNA. Translation: CAB87269.1.
CP002688 Genomic DNA. Translation: AED91113.1.
PIRiT48484.
RefSeqiNP_196330.3. NM_120795.4.
UniGeneiAt.5043.

Genome annotation databases

EnsemblPlantsiAT5G07130.1; AT5G07130.1; AT5G07130.
GeneIDi830604.
KEGGiath:AT5G07130.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL163652 Genomic DNA. Translation: CAB87269.1 .
CP002688 Genomic DNA. Translation: AED91113.1 .
PIRi T48484.
RefSeqi NP_196330.3. NM_120795.4.
UniGenei At.5043.

3D structure databases

ProteinModelPortali Q9LYQ2.
SMRi Q9LYQ2. Positions 39-548.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3702.AT5G07130.1-P.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT5G07130.1 ; AT5G07130.1 ; AT5G07130 .
GeneIDi 830604.
KEGGi ath:AT5G07130.

Organism-specific databases

TAIRi AT5G07130.

Phylogenomic databases

eggNOGi COG2132.
HOGENOMi HOG000241916.
InParanoidi Q9LYQ2.
OMAi KNALNER.
PhylomeDBi Q9LYQ2.

Enzyme and pathway databases

BioCyci ARA:AT5G07130-MONOMER.

Gene expression databases

Genevestigatori Q9LYQ2.

Family and domain databases

Gene3Di 2.60.40.420. 3 hits.
InterProi IPR001117. Cu-oxidase.
IPR011706. Cu-oxidase_2.
IPR011707. Cu-oxidase_3.
IPR002355. Cu_oxidase_Cu_BS.
IPR008972. Cupredoxin.
IPR017761. Laccase.
[Graphical view ]
Pfami PF00394. Cu-oxidase. 1 hit.
PF07731. Cu-oxidase_2. 1 hit.
PF07732. Cu-oxidase_3. 1 hit.
[Graphical view ]
SUPFAMi SSF49503. SSF49503. 3 hits.
TIGRFAMsi TIGR03389. laccase. 1 hit.
PROSITEi PS00079. MULTICOPPER_OXIDASE1. 1 hit.
PS00080. MULTICOPPER_OXIDASE2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
    Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.
    , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
    Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Mutant identification and characterization of the laccase gene family in Arabidopsis."
    Cai X., Davis E.J., Ballif J., Liang M., Bushman E., Haroldsen V., Torabinejad J., Wu Y.
    J. Exp. Bot. 57:2563-2569(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY.

Entry informationi

Entry nameiLAC13_ARATH
AccessioniPrimary (citable) accession number: Q9LYQ2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 3, 2007
Last sequence update: October 1, 2000
Last modified: May 14, 2014
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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