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Protein

40S ribosomal protein S26-3

Gene

RPS26C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: GO_Central
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • mature ribosome assembly Source: CAFA
  • translation Source: InterPro

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-ATH-72702. Ribosomal scanning and start codon recognition.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S26-3
Gene namesi
Name:RPS26C
Ordered Locus Names:At3g56340
ORF Names:F18O21_300
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G56340.
TAIRilocus:2078491. AT3G56340.

Subcellular locationi

GO - Cellular componenti

  • cytosolic ribosome Source: TAIR
  • cytosolic small ribosomal subunit Source: TAIR
  • membrane Source: TAIR

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002505371 – 13040S ribosomal protein S26-3Add BLAST130

Proteomic databases

PaxDbiQ9LYK9.
PRIDEiQ9LYK9.

PTM databases

iPTMnetiQ9LYK9.

Expressioni

Gene expression databases

ExpressionAtlasiQ9LYK9. baseline and differential.
GenevisibleiQ9LYK9. AT.

Interactioni

Protein-protein interaction databases

BioGridi10117. 1 interactor.
IntActiQ9LYK9. 1 interactor.
STRINGi3702.AT3G56340.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LYK9.
SMRiQ9LYK9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1768. Eukaryota.
COG4830. LUCA.
HOGENOMiHOG000108824.
InParanoidiQ9LYK9.
KOiK02976.
OMAiDKAICVT.
OrthoDBiEOG09360YU3.
PhylomeDBiQ9LYK9.

Family and domain databases

InterProiView protein in InterPro
IPR000892. Ribosomal_S26e.
PANTHERiPTHR12538. PTHR12538. 1 hit.
PfamiView protein in Pfam
PF01283. Ribosomal_S26e. 1 hit.
PROSITEiView protein in PROSITE
PS00733. RIBOSOMAL_S26E. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9LYK9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI
60 70 80 90 100
RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
110 120 130
FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
Length:130
Mass (Da):14,628
Last modified:October 1, 2000 - v1
Checksum:iE82716F04E3EAA6E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL163763 Genomic DNA. Translation: CAB87433.1.
CP002686 Genomic DNA. Translation: AEE79511.1.
AY039886 mRNA. Translation: AAK63990.1.
AY133664 mRNA. Translation: AAM91494.1.
PIRiT47751.
RefSeqiNP_191193.1. NM_115492.4.
UniGeneiAt.5076.

Genome annotation databases

EnsemblPlantsiAT3G56340.1; AT3G56340.1; AT3G56340.
GeneIDi824801.
GrameneiAT3G56340.1; AT3G56340.1; AT3G56340.
KEGGiath:AT3G56340.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS263_ARATH
AccessioniPrimary (citable) accession number: Q9LYK9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 3, 2006
Last sequence update: October 1, 2000
Last modified: June 7, 2017
This is version 96 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families