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Q9LX74

- Q9LX74_ARATH

UniProt

Q9LX74 - Q9LX74_ARATH

Protein
Submitted name:

AT3G46210 protein

Gene

F12M12_180

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 87 (01 Oct 2014)
      Sequence version 1 (01 Oct 2000)
      Previous versions | rss
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    Functioni

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal proteinImported

    Enzyme and pathway databases

    ReactomeiREACT_190946. KSRP destabilizes mRNA.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    AT3G46210 proteinImported
    Submitted name:
    At3g46210Imported
    Submitted name:
    Putative uncharacterized protein At3g46210Imported
    Submitted name:
    Putative uncharacterized protein F12M12_180Imported
    Submitted name:
    Ribosomal protein S5 domain 2-like superfamily proteinImported
    Gene namesi
    Name:F12M12_180Imported
    Ordered Locus Names:At3g46210Imported
    OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 3

    Organism-specific databases

    TAIRiAT3G46210.

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    Expressioni

    Gene expression databases

    GenevestigatoriQ9LX74.

    Interactioni

    Protein-protein interaction databases

    STRINGi3702.AT3G46210.3-P.

    Structurei

    3D structure databases

    SMRiQ9LX74. Positions 5-233.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0689.
    HOGENOMiHOG000229515.
    InParanoidiQ9LX74.
    KOiK12590.
    OMAiIAQFNDI.
    PhylomeDBiQ9LX74.

    Family and domain databases

    Gene3Di3.30.230.70. 1 hit.
    InterProiIPR001247. ExoRNase_PH_dom1.
    IPR015847. ExoRNase_PH_dom2.
    IPR027408. PNPase/RNase_PH_dom.
    IPR020568. Ribosomal_S5_D2-typ_fold.
    [Graphical view]
    PfamiPF01138. RNase_PH. 1 hit.
    [Graphical view]
    SUPFAMiSSF54211. SSF54211. 1 hit.
    SSF55666. SSF55666. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q9LX74-1 [UniParc]FASTAAdd to Basket

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    MEIDREDGRT PNQLRPLACS RNILHRPHGS ASWSQGDTKV LAAVYGPKAG    50
    TKKNENAEKA CFEVIWKPKS GQIGKVEKEY EMILKRTIQS ICVLTVNPNT 100
    TTSVIIQVVH DDGSLLPCAI NAACAALVDA GIPMKHLAVA ICCCLAENGY 150
    LVLDPNKLEE KKMTAFAYLV FPNTTLSVLP EGSSVAEGEP VEHGIITSIT 200
    HGVMSVDDYF LCVENGRAAT ASLSAFFRKN FQQSSSKAG 239
    Length:239
    Mass (Da):25,810
    Last modified:October 1, 2000 - v1
    Checksum:i8E22AE4B0899FECE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BT003125 mRNA. Translation: AAO24557.1.
    CP002686 Genomic DNA. Translation: AEE78129.1.
    CP002686 Genomic DNA. Translation: AEE78130.1.
    CP002686 Genomic DNA. Translation: AEE78131.1.
    CP002686 Genomic DNA. Translation: AEE78132.1.
    CP002686 Genomic DNA. Translation: AEE78133.1.
    CP002686 Genomic DNA. Translation: AEE78134.1.
    AK228171 mRNA. Translation: BAF00127.1.
    AK317261 mRNA. Translation: BAH19939.1.
    AK317537 mRNA. Translation: BAH20201.1.
    AL355775 Genomic DNA. Translation: CAB90948.1.
    PIRiT49262.
    RefSeqiNP_001030817.1. NM_001035740.2.
    NP_001030818.1. NM_001035741.2.
    NP_001030819.1. NM_001035742.2.
    NP_001078250.1. NM_001084781.1.
    NP_001190019.1. NM_001203090.1.
    NP_190207.1. NM_114490.3.
    UniGeneiAt.43331.

    Genome annotation databases

    EnsemblPlantsiAT3G46210.1; AT3G46210.1; AT3G46210.
    AT3G46210.2; AT3G46210.2; AT3G46210.
    AT3G46210.3; AT3G46210.3; AT3G46210.
    AT3G46210.4; AT3G46210.4; AT3G46210.
    AT3G46210.5; AT3G46210.5; AT3G46210.
    AT3G46210.6; AT3G46210.6; AT3G46210.
    GeneIDi823766.
    KEGGiath:AT3G46210.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BT003125 mRNA. Translation: AAO24557.1 .
    CP002686 Genomic DNA. Translation: AEE78129.1 .
    CP002686 Genomic DNA. Translation: AEE78130.1 .
    CP002686 Genomic DNA. Translation: AEE78131.1 .
    CP002686 Genomic DNA. Translation: AEE78132.1 .
    CP002686 Genomic DNA. Translation: AEE78133.1 .
    CP002686 Genomic DNA. Translation: AEE78134.1 .
    AK228171 mRNA. Translation: BAF00127.1 .
    AK317261 mRNA. Translation: BAH19939.1 .
    AK317537 mRNA. Translation: BAH20201.1 .
    AL355775 Genomic DNA. Translation: CAB90948.1 .
    PIRi T49262.
    RefSeqi NP_001030817.1. NM_001035740.2.
    NP_001030818.1. NM_001035741.2.
    NP_001030819.1. NM_001035742.2.
    NP_001078250.1. NM_001084781.1.
    NP_001190019.1. NM_001203090.1.
    NP_190207.1. NM_114490.3.
    UniGenei At.43331.

    3D structure databases

    SMRi Q9LX74. Positions 5-233.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3702.AT3G46210.3-P.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT3G46210.1 ; AT3G46210.1 ; AT3G46210 .
    AT3G46210.2 ; AT3G46210.2 ; AT3G46210 .
    AT3G46210.3 ; AT3G46210.3 ; AT3G46210 .
    AT3G46210.4 ; AT3G46210.4 ; AT3G46210 .
    AT3G46210.5 ; AT3G46210.5 ; AT3G46210 .
    AT3G46210.6 ; AT3G46210.6 ; AT3G46210 .
    GeneIDi 823766.
    KEGGi ath:AT3G46210.

    Organism-specific databases

    TAIRi AT3G46210.

    Phylogenomic databases

    eggNOGi COG0689.
    HOGENOMi HOG000229515.
    InParanoidi Q9LX74.
    KOi K12590.
    OMAi IAQFNDI.
    PhylomeDBi Q9LX74.

    Enzyme and pathway databases

    Reactomei REACT_190946. KSRP destabilizes mRNA.

    Miscellaneous databases

    PROi Q9LX74.

    Gene expression databases

    Genevestigatori Q9LX74.

    Family and domain databases

    Gene3Di 3.30.230.70. 1 hit.
    InterProi IPR001247. ExoRNase_PH_dom1.
    IPR015847. ExoRNase_PH_dom2.
    IPR027408. PNPase/RNase_PH_dom.
    IPR020568. Ribosomal_S5_D2-typ_fold.
    [Graphical view ]
    Pfami PF01138. RNase_PH. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54211. SSF54211. 1 hit.
    SSF55666. SSF55666. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
      European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
      Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
      , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. ColumbiaImported.
    2. Jordan N., Bangert S., Wiedelmann R., Voss H., Unseld M., Mewes H.W., Rudd S., Lemcke K., Mayer K.F.X., Quetier F., Salanoubat M.
      Submitted (MAY-2000) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    3. EU Arabidopsis sequencing project
      Submitted (MAY-2000) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    4. Cited for: NUCLEOTIDE SEQUENCE.
    5. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
      Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.
      , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
      Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    6. "Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs."
      Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M., Shinozaki K.
      DNA Res. 0:0-0(2009)
      Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: Mixture of silique and flowerImported and Rosette leafImported.
    7. TAIR
      Swarbreck D., Lamesch P., Wilks C., Huala E.
      Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    8. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. ColumbiaImported.

    Entry informationi

    Entry nameiQ9LX74_ARATH
    AccessioniPrimary (citable) accession number: Q9LX74
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 1, 2000
    Last sequence update: October 1, 2000
    Last modified: October 1, 2014
    This is version 87 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3