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Q9LX74 (Q9LX74_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 85. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

At3g46210 EMBL AAO24557.1

Putative uncharacterized protein At3g46210 EMBL BAF00127.1

Putative uncharacterized protein F12M12_180 EMBL CAB90948.1

Ribosomal protein S5 domain 2-like superfamily protein EMBL AEE78129.1
Gene names
Name:F12M12_180 EMBL CAB90948.1
Ordered Locus Names:At3g46210 EMBL AEE78129.1 TAIR AT3G46210
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length239 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein EMBL AEE78129.1
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q9LX74 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: 8E22AE4B0899FECE

FASTA23925,810
        10         20         30         40         50         60 
MEIDREDGRT PNQLRPLACS RNILHRPHGS ASWSQGDTKV LAAVYGPKAG TKKNENAEKA 

        70         80         90        100        110        120 
CFEVIWKPKS GQIGKVEKEY EMILKRTIQS ICVLTVNPNT TTSVIIQVVH DDGSLLPCAI 

       130        140        150        160        170        180 
NAACAALVDA GIPMKHLAVA ICCCLAENGY LVLDPNKLEE KKMTAFAYLV FPNTTLSVLP 

       190        200        210        220        230 
EGSSVAEGEP VEHGIITSIT HGVMSVDDYF LCVENGRAAT ASLSAFFRKN FQQSSSKAG 

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. expand/collapse author list , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]Jordan N., Bangert S., Wiedelmann R., Voss H., Unseld M., Mewes H.W., Rudd S., Lemcke K., Mayer K.F.X., Quetier F., Salanoubat M.
Submitted (MAY-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]EU Arabidopsis sequencing project
Submitted (MAY-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]"Arabidopsis ORF clones."
Shinn P., Chen H., Cheuk R., Kim C.J., Bowser L., Carninci P., Chan M.M., Chang C.H., Dale J.M., Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M. expand/collapse author list , Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K. expand/collapse author list , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[6]"Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs."
Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M., Shinozaki K.
DNA Res. 0:0-0(2009)
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Mixture of silique and flower EMBL BAH19939.1 and Rosette leaf EMBL BAH20201.1.
[7]TAIR
Swarbreck D., Lamesch P., Wilks C., Huala E.
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[8]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BT003125 mRNA. Translation: AAO24557.1.
CP002686 Genomic DNA. Translation: AEE78129.1.
CP002686 Genomic DNA. Translation: AEE78130.1.
CP002686 Genomic DNA. Translation: AEE78131.1.
CP002686 Genomic DNA. Translation: AEE78132.1.
CP002686 Genomic DNA. Translation: AEE78133.1.
CP002686 Genomic DNA. Translation: AEE78134.1.
AK228171 mRNA. Translation: BAF00127.1.
AK317261 mRNA. Translation: BAH19939.1.
AK317537 mRNA. Translation: BAH20201.1.
AL355775 Genomic DNA. Translation: CAB90948.1.
PIRT49262.
RefSeqNP_001030817.1. NM_001035740.2.
NP_001030818.1. NM_001035741.2.
NP_001030819.1. NM_001035742.2.
NP_001078250.1. NM_001084781.1.
NP_001190019.1. NM_001203090.1.
NP_190207.1. NM_114490.3.
UniGeneAt.43331.

3D structure databases

ProteinModelPortalQ9LX74.
SMRQ9LX74. Positions 5-233.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActQ9LX74. 2 interactions.
STRING3702.AT3G46210.3-P.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT3G46210.1; AT3G46210.1; AT3G46210.
AT3G46210.2; AT3G46210.2; AT3G46210.
AT3G46210.3; AT3G46210.3; AT3G46210.
AT3G46210.4; AT3G46210.4; AT3G46210.
AT3G46210.5; AT3G46210.5; AT3G46210.
AT3G46210.6; AT3G46210.6; AT3G46210.
GeneID823766.
KEGGath:AT3G46210.

Organism-specific databases

TAIRAT3G46210.

Phylogenomic databases

eggNOGCOG0689.
HOGENOMHOG000229515.
InParanoidQ9LX74.
KOK12590.
OMAIAQFNDI.
PhylomeDBQ9LX74.

Gene expression databases

GenevestigatorQ9LX74.

Family and domain databases

Gene3D3.30.230.70. 1 hit.
InterProIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR027408. PNPase/RNase_PH_dom.
IPR020568. Ribosomal_S5_D2-typ_fold.
[Graphical view]
PfamPF01138. RNase_PH. 1 hit.
[Graphical view]
SUPFAMSSF54211. SSF54211. 1 hit.
SSF55666. SSF55666. 1 hit.
ProtoNetSearch...

Other

PROQ9LX74.

Entry information

Entry nameQ9LX74_ARATH
AccessionPrimary (citable) accession number: Q9LX74
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: July 9, 2014
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)