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Protein
Submitted name:

AT3G46210 protein

Gene

F12M12_180

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal proteinImported

Enzyme and pathway databases

ReactomeiREACT_190946. KSRP destabilizes mRNA.
REACT_233935. mRNA decay by 3' to 5' exoribonuclease.

Names & Taxonomyi

Protein namesi
Submitted name:
AT3G46210 proteinImported
Submitted name:
At3g46210Imported
Submitted name:
Putative uncharacterized protein At3g46210Imported
Submitted name:
Putative uncharacterized protein F12M12_180Imported
Submitted name:
Ribosomal protein S5 domain 2-like superfamily proteinImported
Gene namesi
Name:F12M12_180Imported
Ordered Locus Names:At3g46210Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 3

Organism-specific databases

TAIRiAT3G46210.

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriQ9LX74.

Interactioni

Protein-protein interaction databases

IntActiQ9LX74. 2 interactions.
STRINGi3702.AT3G46210.3-P.

Structurei

3D structure databases

ProteinModelPortaliQ9LX74.
SMRiQ9LX74. Positions 5-233.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0689.
HOGENOMiHOG000229515.
KOiK12590.
OMAiICCCLTE.
PhylomeDBiQ9LX74.

Family and domain databases

Gene3Di3.30.230.70. 1 hit.
InterProiIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR027408. PNPase/RNase_PH_dom.
IPR020568. Ribosomal_S5_D2-typ_fold.
[Graphical view]
PfamiPF01138. RNase_PH. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
SSF55666. SSF55666. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9LX74-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEIDREDGRT PNQLRPLACS RNILHRPHGS ASWSQGDTKV LAAVYGPKAG
60 70 80 90 100
TKKNENAEKA CFEVIWKPKS GQIGKVEKEY EMILKRTIQS ICVLTVNPNT
110 120 130 140 150
TTSVIIQVVH DDGSLLPCAI NAACAALVDA GIPMKHLAVA ICCCLAENGY
160 170 180 190 200
LVLDPNKLEE KKMTAFAYLV FPNTTLSVLP EGSSVAEGEP VEHGIITSIT
210 220 230
HGVMSVDDYF LCVENGRAAT ASLSAFFRKN FQQSSSKAG
Length:239
Mass (Da):25,810
Last modified:October 1, 2000 - v1
Checksum:i8E22AE4B0899FECE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT003125 mRNA. Translation: AAO24557.1.
CP002686 Genomic DNA. Translation: AEE78129.1.
CP002686 Genomic DNA. Translation: AEE78130.1.
CP002686 Genomic DNA. Translation: AEE78131.1.
CP002686 Genomic DNA. Translation: AEE78132.1.
CP002686 Genomic DNA. Translation: AEE78133.1.
CP002686 Genomic DNA. Translation: AEE78134.1.
AK228171 mRNA. Translation: BAF00127.1.
AK317261 mRNA. Translation: BAH19939.1.
AK317537 mRNA. Translation: BAH20201.1.
AL355775 Genomic DNA. Translation: CAB90948.1.
PIRiT49262.
RefSeqiNP_001030817.1. NM_001035740.2.
NP_001030818.1. NM_001035741.2.
NP_001030819.1. NM_001035742.2.
NP_001078250.1. NM_001084781.1.
NP_001190019.1. NM_001203090.1.
NP_190207.1. NM_114490.3.
UniGeneiAt.43331.

Genome annotation databases

EnsemblPlantsiAT3G46210.1; AT3G46210.1; AT3G46210.
AT3G46210.2; AT3G46210.2; AT3G46210.
AT3G46210.3; AT3G46210.3; AT3G46210.
AT3G46210.4; AT3G46210.4; AT3G46210.
AT3G46210.5; AT3G46210.5; AT3G46210.
AT3G46210.6; AT3G46210.6; AT3G46210.
GeneIDi823766.
KEGGiath:AT3G46210.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT003125 mRNA. Translation: AAO24557.1.
CP002686 Genomic DNA. Translation: AEE78129.1.
CP002686 Genomic DNA. Translation: AEE78130.1.
CP002686 Genomic DNA. Translation: AEE78131.1.
CP002686 Genomic DNA. Translation: AEE78132.1.
CP002686 Genomic DNA. Translation: AEE78133.1.
CP002686 Genomic DNA. Translation: AEE78134.1.
AK228171 mRNA. Translation: BAF00127.1.
AK317261 mRNA. Translation: BAH19939.1.
AK317537 mRNA. Translation: BAH20201.1.
AL355775 Genomic DNA. Translation: CAB90948.1.
PIRiT49262.
RefSeqiNP_001030817.1. NM_001035740.2.
NP_001030818.1. NM_001035741.2.
NP_001030819.1. NM_001035742.2.
NP_001078250.1. NM_001084781.1.
NP_001190019.1. NM_001203090.1.
NP_190207.1. NM_114490.3.
UniGeneiAt.43331.

3D structure databases

ProteinModelPortaliQ9LX74.
SMRiQ9LX74. Positions 5-233.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ9LX74. 2 interactions.
STRINGi3702.AT3G46210.3-P.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G46210.1; AT3G46210.1; AT3G46210.
AT3G46210.2; AT3G46210.2; AT3G46210.
AT3G46210.3; AT3G46210.3; AT3G46210.
AT3G46210.4; AT3G46210.4; AT3G46210.
AT3G46210.5; AT3G46210.5; AT3G46210.
AT3G46210.6; AT3G46210.6; AT3G46210.
GeneIDi823766.
KEGGiath:AT3G46210.

Organism-specific databases

TAIRiAT3G46210.

Phylogenomic databases

eggNOGiCOG0689.
HOGENOMiHOG000229515.
KOiK12590.
OMAiICCCLTE.
PhylomeDBiQ9LX74.

Enzyme and pathway databases

ReactomeiREACT_190946. KSRP destabilizes mRNA.
REACT_233935. mRNA decay by 3' to 5' exoribonuclease.

Miscellaneous databases

PROiQ9LX74.

Gene expression databases

GenevestigatoriQ9LX74.

Family and domain databases

Gene3Di3.30.230.70. 1 hit.
InterProiIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR027408. PNPase/RNase_PH_dom.
IPR020568. Ribosomal_S5_D2-typ_fold.
[Graphical view]
PfamiPF01138. RNase_PH. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
SSF55666. SSF55666. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Blocker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schafer M., Muller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Lohnert T.H., Nordsiek G., Reichelt J., Scharfe M., Schon O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwalder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.P., Cottet A., Casacuberta E., Monfort A., Argiriou A., flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.W., Mayer K.F., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. ColumbiaImported.
  2. Jordan N., Bangert S., Wiedelmann R., Voss H., Unseld M., Mewes H.W., Rudd S., Lemcke K., Mayer K.F.X., Quetier F., Salanoubat M.
    Submitted (MAY-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. EU Arabidopsis sequencing project
    Submitted (MAY-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  4. Cited for: NUCLEOTIDE SEQUENCE.
  5. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.
    , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  6. "Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs."
    Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M., Shinozaki K.
    DNA Res. 0:0-0(2009)
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: Mixture of silique and flowerImported and Rosette leafImported.
  7. TAIR
    Swarbreck D., Lamesch P., Wilks C., Huala E.
    Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  8. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. ColumbiaImported.

Entry informationi

Entry nameiQ9LX74_ARATH
AccessioniPrimary (citable) accession number: Q9LX74
Entry historyi
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: February 4, 2015
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.