Q9LX74 (Q9LX74_ARATH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
AT3G46210 protein EMBL BAH19939.1

Submitted name:
At3g46210 EMBL AAO24557.1
Submitted name:
Exosome complex component RRP46 EMBL AEE78129.1
Submitted name:
Putative uncharacterized protein At3g46210 EMBL BAF00127.1
Submitted name:
Putative uncharacterized protein F12M12_180 EMBL CAB90948.1

Gene names

Name:	F12M12_180 EMBL CAB90948.1
Ordered Locus Names:	At3g46210 EMBL BAF00127.1 TAIR At3g46210
ORF Names:	AT3G46210 EMBL AEE78129.1

Organism

Arabidopsis thaliana (Mouse-ear cress) [Reference proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	239 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

	Sequence		Length	Mass (Da)
	Q9LX74 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: 8E22AE4B0899FECE	FASTA	239	25,810
	10 20 30 40 50 60 MEIDREDGRT PNQLRPLACS RNILHRPHGS ASWSQGDTKV LAAVYGPKAG TKKNENAEKA 70 80 90 100 110 120 CFEVIWKPKS GQIGKVEKEY EMILKRTIQS ICVLTVNPNT TTSVIIQVVH DDGSLLPCAI 130 140 150 160 170 180 NAACAALVDA GIPMKHLAVA ICCCLAENGY LVLDPNKLEE KKMTAFAYLV FPNTTLSVLP 190 200 210 220 230 EGSSVAEGEP VEHGIITSIT HGVMSVDDYF LCVENGRAAT ASLSAFFRKN FQQSSSKAG

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana." European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	Jordan N., Bangert S., Wiedelmann R., Voss H., Unseld M., Mewes H.W., Rudd S., Lemcke K., Mayer K.F.X., Quetier F., Salanoubat M. Submitted (MAY-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[3]	EU Arabidopsis sequencing project Submitted (MAY-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[4]	"Arabidopsis ORF clones." Shinn P., Chen H., Cheuk R., Kim C.J., Bowser L., Carninci P., Chan M.M., Chang C.H., Dale J.M., Hayashizaki Y., Hsuan V.W., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M. , Lin J., Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M., Wong C., Wu H.C., Yamada K., Yu G., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[5]	"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs." Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K. , Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K. Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[6]	"Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs." Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M., Shinozaki K. DNA Res. 0:0-0(2009) Cited for: NUCLEOTIDE SEQUENCE. Tissue: Mixture of silique and flower EMBL BAH19939.1 and Rosette leaf EMBL BAH20201.1.
[7]	Arabidopsis TAIR10 Release Swarbreck D., Lamesch P., Wilks C., Huala E. Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[8]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BT003125 mRNA. Translation: AAO24557.1. CP002686 Genomic DNA. Translation: AEE78129.1. CP002686 Genomic DNA. Translation: AEE78130.1. CP002686 Genomic DNA. Translation: AEE78131.1. CP002686 Genomic DNA. Translation: AEE78132.1. CP002686 Genomic DNA. Translation: AEE78133.1. CP002686 Genomic DNA. Translation: AEE78134.1. AK228171 mRNA. Translation: BAF00127.1. AK317261 mRNA. Translation: BAH19939.1. AK317537 mRNA. Translation: BAH20201.1. AL355775 Genomic DNA. Translation: CAB90948.1.
IPI	IPI00521571.
PIR	T49262.
RefSeq	NP_001030817.1. NM_001035740.2. NP_001030818.1. NM_001035741.2. NP_001030819.1. NM_001035742.2. NP_001078250.1. NM_001084781.1. NP_001190019.1. NM_001203090.1. NP_190207.1. NM_114490.3.
UniGene	At.43331.
3D structure databases
SMR	Q9LX74. Positions 5-233.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q9LX74. 2 interactions.
STRING	3702.AT3G46210.3-P.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT3G46210.1; AT3G46210.1; AT3G46210. AT3G46210.2; AT3G46210.2; AT3G46210. AT3G46210.3; AT3G46210.3; AT3G46210. AT3G46210.4; AT3G46210.4; AT3G46210. AT3G46210.5; AT3G46210.5; AT3G46210. AT3G46210.6; AT3G46210.6; AT3G46210.
GeneID	823766.
KEGG	ath:AT3G46210.
Organism-specific databases
TAIR	At3g46210.
Phylogenomic databases
eggNOG	COG0689.
HOGENOM	HOG000229515.
InParanoid	Q9LX74.
KO	K12590.
OMA	VRETCEA.
ProtClustDB	CLSN2684812.
Gene expression databases
Genevestigator	Q9LX74.
Family and domain databases
InterPro	IPR001247. ExoRNase_PH_dom1. IPR020568. Ribosomal_S5_D2-typ_fold. [Graphical view]
Pfam	PF01138. RNase_PH. 1 hit. [Graphical view]
SUPFAM	SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q9LX74_ARATH

Accession

Primary (citable) accession number: Q9LX74

Entry history

Integrated into UniProtKB/TrEMBL:	October 1, 2000
Last sequence update:	October 1, 2000
Last modified:	May 1, 2013
This is version 72 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)