Reviewed, UniProtKB/Swiss-Prot Q9LX56 (FB212_ARATH)

Names and origin

Protein names

Recommended name:
    F-box protein At3g59150

Gene names

Ordered Locus Names:	At3g59150
ORF Names:	F17J16.200, F25L23.10

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	475 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Sequence similarities	Contains 1 F-box domain.
Sequence caution	The sequence CAB86943.1 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene At3g59150 has been split into 2 genes: At3g59150 and At3g59160.

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
	Q2V412	1	EBI-1235891,EBI-1238781
CALM	P62157	1	EBI-1235891,EBI-397403	From a different organism.
CAM1	P25854	2	EBI-1235891,EBI-1235664
CAM6	Q03509	1	EBI-1235891,EBI-1236097
CAM7	P59220	1	EBI-1235891,EBI-1236031
CML10	P30187	1	EBI-1235891,EBI-1238722
CML8	O23320	1	EBI-1235891,EBI-1237764
CML9	Q9S744	1	EBI-1235891,EBI-1236048

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 475	475	F-box protein At3g59150		PRO_0000274952
Regions
	Domain	12 – 58	47	F-box

Sequences

	Sequence		Length	Mass (Da)
	Q9LX56-1 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: 476C1EC16700F385	FASTA	475	53,870
	10 20 30 40 50 60 MEANKKAKPS YGDVISNLPN DLLCRILSYL STKEAALTSI LSKRWSNLLL SIPILDFDDS 70 80 90 100 110 120 VLLKPQKGQR KNVFFKAFVD RLLSQRVETS SHVQRVSLKC RQGGVEPDCV IKWILTTVRD 130 140 150 160 170 180 LGVLDLSLCI DFGIFHLPFN VFRSKTLVKL RIGTMIRLSQ FPSDVVSPTL NSLVLDLVEF 190 200 210 220 230 240 RDGDKVEFRQ ILLAFPSLQS LRVHESNKWK FWNGSASSRT LKSLVYRSDD DSSAPKPCVS 250 260 270 280 290 300 FDTPSLVYLD YSDMVADKYE NLKFDSLVEA RLDLHLTAFQ IMRKPNNIGI VSGDVTTLFK 310 320 330 340 350 360 GIRNVKILCL SPDALEALYY RGEKIPMFNN LITLSLGSDK PHGSPFIFWK LLPSLLNNSL 370 380 390 400 410 420 KLETLIIKGL VHYVAEGWEG LSPMTPMSRL CFSWDTVSDS LSSSAMKVLE ISGYKGTWQE 430 440 450 460 470 LNQMKRFLGN LSRLEVVRVY HKAMDDKERI NVMFDLFLLP KVSSECDIQV MKETA

References

[1]

"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana." Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. Nature 408:820-822(2000) [PubMed: 11130713] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.

[2]

"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.

Web resources

PlantsUBQ

A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

Cross-references

Sequence databases
EMBLGenBankDDBJ	AL163527 Genomic DNA. Translation: CAB86943.1. Sequence problems. AL356014 Genomic DNA. Translation: CAB91585.1. AY099781 mRNA. Translation: AAM20632.1. BT006604 mRNA. Translation: AAP31948.1.
IPI	IPI00533269.
PIR	T47797. T48983.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
IntAct	Q9LX56. 8 interactions.
Proteomic databases
PRIDE	Q9LX56.
Genome annotation databases
GenomeReviews	Gene locus AT3G59150 in contig BA000014_GR.
NMPDR	fig|3702.1.peg.17263.
Organism-specific databases
TAIR	At3g59150.
Family and domain databases
InterPro	IPR001810. F-box. IPR006566. FBD-like. [Graphical view]
Pfam	PF00646. F-box. 1 hit. [Graphical view]
SMART	SM00579. FBD. 1 hit. SM00256. FBOX. 1 hit. [Graphical view]
PROSITE	PS50181. FBOX. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

FB212_ARATH

Accession

Primary (citable) accession number: Q9LX56
Secondary accession number(s): Q9LYS1

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 6, 2007
Last sequence update:	October 1, 2000
Last modified:	February 10, 2009
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)