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Q9LX56 (FB212_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
F-box protein At3g59150
Gene names
Ordered Locus Names:At3g59150
ORF Names:F17J16.200, F25L23.10
OrganismArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length475 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Contains 1 F-box domain.

Sequence caution

The sequence CAB86943.1 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene At3g59150 has been split into 2 genes: At3g59150 and At3g59160.

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular functionprotein binding

Inferred from physical interaction. Source: IntAct

Complete GO annotation...

Binary interactions

With

Entry

#Exp.

IntAct

Notes

CAM1P258542EBI-1235891,EBI-1235664

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 475475F-box protein At3g59150
PRO_0000274952

Regions

Domain12 – 5847F-box

Sequences

Sequence LengthMass (Da)Tools
Q9LX56 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: 476C1EC16700F385

FASTA47553,870
        10         20         30         40         50         60 
MEANKKAKPS YGDVISNLPN DLLCRILSYL STKEAALTSI LSKRWSNLLL SIPILDFDDS 

        70         80         90        100        110        120 
VLLKPQKGQR KNVFFKAFVD RLLSQRVETS SHVQRVSLKC RQGGVEPDCV IKWILTTVRD 

       130        140        150        160        170        180 
LGVLDLSLCI DFGIFHLPFN VFRSKTLVKL RIGTMIRLSQ FPSDVVSPTL NSLVLDLVEF 

       190        200        210        220        230        240 
RDGDKVEFRQ ILLAFPSLQS LRVHESNKWK FWNGSASSRT LKSLVYRSDD DSSAPKPCVS 

       250        260        270        280        290        300 
FDTPSLVYLD YSDMVADKYE NLKFDSLVEA RLDLHLTAFQ IMRKPNNIGI VSGDVTTLFK 

       310        320        330        340        350        360 
GIRNVKILCL SPDALEALYY RGEKIPMFNN LITLSLGSDK PHGSPFIFWK LLPSLLNNSL 

       370        380        390        400        410        420 
KLETLIIKGL VHYVAEGWEG LSPMTPMSRL CFSWDTVSDS LSSSAMKVLE ISGYKGTWQE 

       430        440        450        460        470 
LNQMKRFLGN LSRLEVVRVY HKAMDDKERI NVMFDLFLLP KVSSECDIQV MKETA

« Hide

References

[1]"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. expand/collapse author list , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
Nature 408:820-822(2000) [PubMed: 11130713] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed: 14593172] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
+Additional computationally mapped references.

Web resources

PlantsUBQ

A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AL163527 Genomic DNA. Translation: CAB86943.1. Sequence problems.
AL356014 Genomic DNA. Translation: CAB91585.1.
AY099781 mRNA. Translation: AAM20632.1.
BT006604 mRNA. Translation: AAP31948.1.
IPIIPI00533269.
PIRT47797.
T48983.

3D structure databases

ProteinModelPortalQ9LX56.
SMRQ9LX56. Positions 15-49, 166-206.
ModBaseSearch...

Protein-protein interaction databases

IntActQ9LX56. 8 interactions.

Proteomic databases

PRIDEQ9LX56.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GenomeReviewsGene locus AT3G59150 in contig BA000014_GR.
NMPDRfig|3702.1.peg.17263.

Organism-specific databases

TAIRAt3g59150.

Phylogenomic databases

GeneTreeEPGT00070000028906.
HOGENOMHBG747071.
InParanoidQ9LX56.
PhylomeDBQ9LX56.

Gene expression databases

GenevestigatorQ9LX56.

Family and domain databases

InterProIPR001810. F-box_dom_cyclin-like.
IPR022364. F-box_dom_Skp2-like.
IPR006566. FBD-like.
[Graphical view]
PfamPF00646. F-box. 1 hit.
[Graphical view]
SMARTSM00579. FBD. 1 hit.
SM00256. FBOX. 1 hit.
[Graphical view]
SUPFAMSSF81383. F-box_dom_Skp2-like. 1 hit.
PROSITEPS50181. FBOX. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameFB212_ARATH
AccessionPrimary (citable) accession number: Q9LX56
Secondary accession number(s): Q9LYS1
Entry history
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: October 1, 2000
Last modified: December 14, 2011
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Interactions·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·Documents