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Q9LW55

- FB180_ARATH

UniProt

Q9LW55 - FB180_ARATH

Protein

Putative F-box protein At3g23420

Gene

At3g23420

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 57 (01 Oct 2014)
      Sequence version 1 (01 Oct 2000)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative F-box protein At3g23420
    Gene namesi
    Ordered Locus Names:At3g23420
    ORF Names:MLM24.15
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 3

    Organism-specific databases

    TAIRiAT3G23420.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 268268Putative F-box protein At3g23420PRO_0000283450Add
    BLAST

    Proteomic databases

    PRIDEiQ9LW55.

    Expressioni

    Gene expression databases

    GenevestigatoriQ9LW55.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9LW55.
    SMRiQ9LW55. Positions 8-47.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini5 – 5147F-boxPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 F-box domain.PROSITE-ProRule annotation

    Phylogenomic databases

    InParanoidiQ9LW55.
    PhylomeDBiQ9LW55.

    Family and domain databases

    InterProiIPR006527. F-box-assoc_dom_typ1.
    IPR017451. F-box-assoc_interact_dom.
    IPR001810. F-box_dom.
    [Graphical view]
    PfamiPF00646. F-box. 1 hit.
    PF07734. FBA_1. 1 hit.
    [Graphical view]
    SMARTiSM00256. FBOX. 1 hit.
    [Graphical view]
    SUPFAMiSSF81383. SSF81383. 2 hits.
    TIGRFAMsiTIGR01640. F_box_assoc_1. 1 hit.
    PROSITEiPS50181. FBOX. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9LW55-1 [UniParc]FASTAAdd to Basket

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    MSNLPRDLSD LPRNMAEEVL SRVPMTSLRR LRFTCKKWNT LSRCRSFAKK    50
    HLVCQAKVAA KKREYKVVMM MDFRVYLMRI NLQNNVELCI KRERELLFPD 100
    ASDQIYVRHV FHCDGLLLCI MKDNPRLVVC NPYSGQTRWI ETTNNPQRLD 150
    AYSYALGYNS STKSHKILSF GMMFDYVSST SAEFKIYDFN SDSWRLAVLF 200
    QRMDTLQMEI WVTTKIEPNT VSWSSKFFLS VDMRELTGRY SMFSFSDASF 250
    FIDEEKKVAV VFDKGKKK 268
    Length:268
    Mass (Da):31,556
    Last modified:October 1, 2000 - v1
    Checksum:i16AB994116BD8C4B
    GO

    Sequence cautioni

    The sequence AEE76763.1 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB015474 Genomic DNA. Translation: BAB02286.1.
    CP002686 Genomic DNA. Translation: AEE76763.1. Sequence problems.
    RefSeqiNP_188984.1. NM_113245.1.
    UniGeneiAt.53459.

    Genome annotation databases

    GeneIDi821923.
    KEGGiath:AT3G23420.

    Cross-referencesi

    Web resourcesi

    PlantsUBQ

    A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB015474 Genomic DNA. Translation: BAB02286.1 .
    CP002686 Genomic DNA. Translation: AEE76763.1 . Sequence problems.
    RefSeqi NP_188984.1. NM_113245.1.
    UniGenei At.53459.

    3D structure databases

    ProteinModelPortali Q9LW55.
    SMRi Q9LW55. Positions 8-47.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi Q9LW55.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 821923.
    KEGGi ath:AT3G23420.

    Organism-specific databases

    TAIRi AT3G23420.

    Phylogenomic databases

    InParanoidi Q9LW55.
    PhylomeDBi Q9LW55.

    Gene expression databases

    Genevestigatori Q9LW55.

    Family and domain databases

    InterProi IPR006527. F-box-assoc_dom_typ1.
    IPR017451. F-box-assoc_interact_dom.
    IPR001810. F-box_dom.
    [Graphical view ]
    Pfami PF00646. F-box. 1 hit.
    PF07734. FBA_1. 1 hit.
    [Graphical view ]
    SMARTi SM00256. FBOX. 1 hit.
    [Graphical view ]
    SUPFAMi SSF81383. SSF81383. 2 hits.
    TIGRFAMsi TIGR01640. F_box_assoc_1. 1 hit.
    PROSITEi PS50181. FBOX. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
      Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.
      DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.

    Entry informationi

    Entry nameiFB180_ARATH
    AccessioniPrimary (citable) accession number: Q9LW55
    Secondary accession number(s): F4J428
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 3, 2007
    Last sequence update: October 1, 2000
    Last modified: October 1, 2014
    This is version 57 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3