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Protein

Putative F-box protein At3g23420

Gene

At3g23420

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Putative F-box protein At3g23420
Gene namesi
Ordered Locus Names:At3g23420
ORF Names:MLM24.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G23420.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 268268Putative F-box protein At3g23420PRO_0000283450Add
BLAST

Proteomic databases

PRIDEiQ9LW55.

Expressioni

Gene expression databases

GenevestigatoriQ9LW55.

Structurei

3D structure databases

ProteinModelPortaliQ9LW55.
SMRiQ9LW55. Positions 8-47.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini5 – 5147F-boxPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 F-box domain.PROSITE-ProRule annotation

Phylogenomic databases

InParanoidiQ9LW55.
PhylomeDBiQ9LW55.

Family and domain databases

InterProiIPR006527. F-box-assoc_dom_typ1.
IPR017451. F-box-assoc_interact_dom.
IPR001810. F-box_dom.
[Graphical view]
PfamiPF00646. F-box. 1 hit.
PF07734. FBA_1. 1 hit.
[Graphical view]
SMARTiSM00256. FBOX. 1 hit.
[Graphical view]
SUPFAMiSSF81383. SSF81383. 2 hits.
TIGRFAMsiTIGR01640. F_box_assoc_1. 1 hit.
PROSITEiPS50181. FBOX. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LW55-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNLPRDLSD LPRNMAEEVL SRVPMTSLRR LRFTCKKWNT LSRCRSFAKK
60 70 80 90 100
HLVCQAKVAA KKREYKVVMM MDFRVYLMRI NLQNNVELCI KRERELLFPD
110 120 130 140 150
ASDQIYVRHV FHCDGLLLCI MKDNPRLVVC NPYSGQTRWI ETTNNPQRLD
160 170 180 190 200
AYSYALGYNS STKSHKILSF GMMFDYVSST SAEFKIYDFN SDSWRLAVLF
210 220 230 240 250
QRMDTLQMEI WVTTKIEPNT VSWSSKFFLS VDMRELTGRY SMFSFSDASF
260
FIDEEKKVAV VFDKGKKK
Length:268
Mass (Da):31,556
Last modified:October 1, 2000 - v1
Checksum:i16AB994116BD8C4B
GO

Sequence cautioni

The sequence AEE76763.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB015474 Genomic DNA. Translation: BAB02286.1.
CP002686 Genomic DNA. Translation: AEE76763.1. Sequence problems.
RefSeqiNP_188984.1. NM_113245.1.
UniGeneiAt.53459.

Genome annotation databases

GeneIDi821923.
KEGGiath:AT3G23420.

Cross-referencesi

Web resourcesi

PlantsUBQ

A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB015474 Genomic DNA. Translation: BAB02286.1.
CP002686 Genomic DNA. Translation: AEE76763.1. Sequence problems.
RefSeqiNP_188984.1. NM_113245.1.
UniGeneiAt.53459.

3D structure databases

ProteinModelPortaliQ9LW55.
SMRiQ9LW55. Positions 8-47.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ9LW55.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi821923.
KEGGiath:AT3G23420.

Organism-specific databases

TAIRiAT3G23420.

Phylogenomic databases

InParanoidiQ9LW55.
PhylomeDBiQ9LW55.

Miscellaneous databases

PROiQ9LW55.

Gene expression databases

GenevestigatoriQ9LW55.

Family and domain databases

InterProiIPR006527. F-box-assoc_dom_typ1.
IPR017451. F-box-assoc_interact_dom.
IPR001810. F-box_dom.
[Graphical view]
PfamiPF00646. F-box. 1 hit.
PF07734. FBA_1. 1 hit.
[Graphical view]
SMARTiSM00256. FBOX. 1 hit.
[Graphical view]
SUPFAMiSSF81383. SSF81383. 2 hits.
TIGRFAMsiTIGR01640. F_box_assoc_1. 1 hit.
PROSITEiPS50181. FBOX. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
    Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.
    DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.

Entry informationi

Entry nameiFB180_ARATH
AccessioniPrimary (citable) accession number: Q9LW55
Secondary accession number(s): F4J428
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 3, 2007
Last sequence update: October 1, 2000
Last modified: April 29, 2015
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.