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Protein

Probable polygalacturonase At3g15720

Gene

At3g15720

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

Random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei210Proton donorPROSITE-ProRule annotation1
Active sitei233PROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosidase, Hydrolase
Biological processCell wall biogenesis/degradation

Enzyme and pathway databases

BioCyciARA:AT3G15720-MONOMER

Protein family/group databases

CAZyiGH28 Glycoside Hydrolase Family 28

Names & Taxonomyi

Protein namesi
Recommended name:
Probable polygalacturonase At3g15720 (EC:3.2.1.15)
Short name:
PG
Alternative name(s):
Pectinase At3g15720
Gene namesi
Ordered Locus Names:At3g15720
ORF Names:MSJ11.12
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G15720
TAIRilocus:2093212 AT3G15720

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cell wall, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 23Sequence analysisAdd BLAST23
ChainiPRO_000025944624 – 456Probable polygalacturonase At3g15720Add BLAST433

Proteomic databases

PaxDbiQ9LW07
PRIDEiQ9LW07

Expressioni

Gene expression databases

ExpressionAtlasiQ9LW07 baseline and differential
GenevisibleiQ9LW07 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G15720.1

Structurei

3D structure databases

ProteinModelPortaliQ9LW07
SMRiQ9LW07
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati169 – 195PbH1 1Add BLAST27
Repeati196 – 217PbH1 2Add BLAST22
Repeati219 – 239PbH1 3Add BLAST21
Repeati249 – 270PbH1 4Add BLAST22
Repeati278 – 299PbH1 5Add BLAST22
Repeati314 – 341PbH1 6Add BLAST28

Sequence similaritiesi

Belongs to the glycosyl hydrolase 28 family.Curated

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiENOG410IK0F Eukaryota
COG5434 LUCA
HOGENOMiHOG000237792
InParanoidiQ9LW07
KOiK01184
OMAiTFMLQPL
OrthoDBiEOG09360AGW
PhylomeDBiQ9LW07

Family and domain databases

Gene3Di2.160.20.10, 1 hit
InterProiView protein in InterPro
IPR000743 Glyco_hydro_28
IPR006626 PbH1
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence
PfamiView protein in Pfam
PF00295 Glyco_hydro_28, 1 hit
SMARTiView protein in SMART
SM00710 PbH1, 6 hits
SUPFAMiSSF51126 SSF51126, 1 hit
PROSITEiView protein in PROSITE
PS00502 POLYGALACTURONASE, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: Q9LW07-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MKKKTWFLNF SLFFLQIFTS SNALDVTQFG AVGDGVTDDS QAFLKAWEAV
60 70 80 90 100
CSGTGDGQFV VPAGMTFMLQ PLKFQGSCKS TPVFVQMLGK LVAPSKGNWK
110 120 130 140 150
GDKDQWILFT DIEGLVIEGD GEINGQGSSW WEHKGSRPTA LKFRSCNNLR
160 170 180 190 200
LSGLTHLDSP MAHIHISECN YVTISSLRIN APESSPNTDG IDVGASSNVV
210 220 230 240 250
IQDCIIATGD DCIAINSGTS NIHISGIDCG PGHGISIGSL GKDGETATVE
260 270 280 290 300
NVCVQNCNFR GTMNGARIKT WQGGSGYARM ITFNGITLDN VENPIIIDQF
310 320 330 340 350
YNGGDSDNAK DRKSSAVEVS KVVFSNFIGT SKSEYGVDFR CSERVPCTEI
360 370 380 390 400
FLRDMKIETA SSGSGQVAQG QCLNVRGAST IAVPGLECLE LSTDMFSSAQ
410 420 430 440 450
LLEQTCMSAQ SVQPRTTTQP MQDPIWVFQS RGKQLRVYNI AILVSFISLV

TYILAR
Length:456
Mass (Da):49,300
Last modified:October 1, 2000 - v1
Checksum:iE85AFE25CACD5CBD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB017071 Genomic DNA Translation: BAB02303.1
CP002686 Genomic DNA Translation: AEE75718.1
RefSeqiNP_566524.1, NM_112442.2 [Q9LW07-1]
UniGeneiAt.39003

Genome annotation databases

EnsemblPlantsiAT3G15720.1; AT3G15720.1; AT3G15720 [Q9LW07-1]
GeneIDi820815
GrameneiAT3G15720.1; AT3G15720.1; AT3G15720 [Q9LW07-1]
KEGGiath:AT3G15720

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiPGLR3_ARATH
AccessioniPrimary (citable) accession number: Q9LW07
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: October 1, 2000
Last modified: May 23, 2018
This is version 121 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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