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Protein

Uncharacterized protein At5g48480

Gene

At5g48480

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein At5g48480
Gene namesi
Ordered Locus Names:At5g48480
ORF Names:MJE7.12
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G48480.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedCombined sources
Chaini2 – 166165Uncharacterized protein At5g48480PRO_0000220621Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei2 – 21N-acetylalanineCombined sources

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiQ9LV66.
PRIDEiQ9LV66.

Expressioni

Gene expression databases

GenevisibleiQ9LV66. AT.

Interactioni

Subunit structurei

Homodimer.1 Publication

Protein-protein interaction databases

STRINGi3702.AT5G48480.1.

Structurei

Secondary structure

1
166
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi24 – 329Combined sources
Helixi37 – 4812Combined sources
Beta strandi54 – 563Combined sources
Beta strandi72 – 776Combined sources
Beta strandi80 – 867Combined sources
Helixi87 – 893Combined sources
Beta strandi104 – 1085Combined sources
Helixi112 – 12110Combined sources
Helixi131 – 1355Combined sources
Beta strandi138 – 1436Combined sources
Beta strandi149 – 1535Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1XY7X-ray1.80A/B1-166[»]
2Q48X-ray1.80A/B1-166[»]
ProteinModelPortaliQ9LV66.
SMRiQ9LV66. Positions 22-154.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9LV66.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG410J2F2. Eukaryota.
ENOG410YUXH. LUCA.
HOGENOMiHOG000155384.
InParanoidiQ9LV66.
OMAiPFGVTWI.
PhylomeDBiQ9LV66.

Family and domain databases

Gene3Di3.10.180.10. 1 hit.
InterProiIPR029068. Glyas_Bleomycin-R_OHBP_Dase.
[Graphical view]
SUPFAMiSSF54593. SSF54593. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LV66-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAQEDVTAVA TNGAGPVETH LVFTEFKQML LVEAQKVGDA VTFYKSAFGA
60 70 80 90 100
IESGHSLYPK RKLDQELPHV LSSELNLAGS SFVVCDVSSL PGFSTAKSEG
110 120 130 140 150
SGVTFLLGTK DAEAAVAKAV DAGAVKVEVT EAEVELGFKG KVTDPFGVTW
160
IFAEKKTVIT DENKEV
Length:166
Mass (Da):17,557
Last modified:October 1, 2000 - v1
Checksum:i032746AFCB670630
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB020745 Genomic DNA. Translation: BAA96968.1.
CP002688 Genomic DNA. Translation: AED95675.1.
AY074359 mRNA. Translation: AAL67055.1.
AY133780 mRNA. Translation: AAM91714.1.
AY087100 mRNA. Translation: AAM64659.1.
RefSeqiNP_568698.1. NM_124223.3.
UniGeneiAt.20821.
At.68124.

Genome annotation databases

EnsemblPlantsiAT5G48480.1; AT5G48480.1; AT5G48480.
GeneIDi834903.
GrameneiAT5G48480.1; AT5G48480.1; AT5G48480.
KEGGiath:AT5G48480.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB020745 Genomic DNA. Translation: BAA96968.1.
CP002688 Genomic DNA. Translation: AED95675.1.
AY074359 mRNA. Translation: AAL67055.1.
AY133780 mRNA. Translation: AAM91714.1.
AY087100 mRNA. Translation: AAM64659.1.
RefSeqiNP_568698.1. NM_124223.3.
UniGeneiAt.20821.
At.68124.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1XY7X-ray1.80A/B1-166[»]
2Q48X-ray1.80A/B1-166[»]
ProteinModelPortaliQ9LV66.
SMRiQ9LV66. Positions 22-154.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G48480.1.

Proteomic databases

PaxDbiQ9LV66.
PRIDEiQ9LV66.

Protocols and materials databases

DNASUi834903.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G48480.1; AT5G48480.1; AT5G48480.
GeneIDi834903.
GrameneiAT5G48480.1; AT5G48480.1; AT5G48480.
KEGGiath:AT5G48480.

Organism-specific databases

TAIRiAT5G48480.

Phylogenomic databases

eggNOGiENOG410J2F2. Eukaryota.
ENOG410YUXH. LUCA.
HOGENOMiHOG000155384.
InParanoidiQ9LV66.
OMAiPFGVTWI.
PhylomeDBiQ9LV66.

Miscellaneous databases

EvolutionaryTraceiQ9LV66.
PROiQ9LV66.

Gene expression databases

GenevisibleiQ9LV66. AT.

Family and domain databases

Gene3Di3.10.180.10. 1 hit.
InterProiIPR029068. Glyas_Bleomycin-R_OHBP_Dase.
[Graphical view]
SUPFAMiSSF54593. SSF54593. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones."
    Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., Tabata S.
    DNA Res. 7:31-63(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  5. "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features."
    Bienvenut W.V., Sumpton D., Martinez A., Lilla S., Espagne C., Meinnel T., Giglione C.
    Mol. Cell. Proteomics 11:M111.015131-M111.015131(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2, CLEAVAGE OF INITIATOR METHIONINE [LARGE SCALE ANALYSIS], IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  6. "X-ray structure of gene product from Arabidopsis thaliana At5g48480."
    Center for eukaryotic structural genomics (CESG)
    Submitted (FEB-2005) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.8 ANGSTROMS) OF 2-166, SUBUNIT.

Entry informationi

Entry nameiY5848_ARATH
AccessioniPrimary (citable) accession number: Q9LV66
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: October 1, 2000
Last modified: February 17, 2016
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.