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Protein
Submitted name:

Putative WD-repeat protein

Gene

LST8-1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  • long-day photoperiodism Source: TAIR
  • regulation of actin cytoskeleton organization Source: GO_Central
  • regulation of inositol biosynthetic process Source: TAIR
  • regulation of raffinose biosynthetic process Source: TAIR
  • TOR signaling Source: GO_Central

Enzyme and pathway databases

ReactomeiR-ATH-3371571. HSF1-dependent transactivation.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative WD-repeat proteinImported
Submitted name:
Transducin/WD40 repeat-like superfamily proteinImported
Submitted name:
WD-repeat protein, putativeImported
Gene namesi
Name:LST8-1Imported
Synonyms:Lethal with Sec Thirteen 8-1Imported
Ordered Locus Names:At3g18140Imported
OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G18140.
TAIRilocus:2092722. AT3G18140.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

Protein-protein interaction databases

IntActiQ9LV27. 8 interactors.
STRINGi3702.AT3G18140.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 305WD_REPEATS_REGIONInterPro annotationAdd BLAST305
Repeati1 – 30WDPROSITE-ProRule annotationAdd BLAST30
Repeati74 – 108WDPROSITE-ProRule annotationAdd BLAST35
Repeati122 – 156WDPROSITE-ProRule annotationAdd BLAST35
Repeati207 – 241WDPROSITE-ProRule annotationAdd BLAST35
Repeati249 – 290WDPROSITE-ProRule annotationAdd BLAST42

Keywords - Domaini

WD repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0315. Eukaryota.
ENOG410XPVD. LUCA.
OMAiLISCDQA.
OrthoDBiEOG09360ELQ.

Family and domain databases

Gene3Di2.130.10.10. 2 hits.
InterProiView protein in InterPro
IPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
IPR036322. WD40_repeat_dom_sf.
PfamiView protein in Pfam
PF00400. WD40. 5 hits.
PRINTSiPR00320. GPROTEINBRPT.
SMARTiView protein in SMART
SM00320. WD40. 6 hits.
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiView protein in PROSITE
PS00678. WD_REPEATS_1. 4 hits.
PS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 1 hit.

Sequencei

Sequence statusi: Complete.

Q9LV27-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL
60 70 80 90 100
AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
110 120 130 140 150
TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA
160 170 180 190 200
NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
210 220 230 240 250
FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT
260 270 280 290 300
GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC

CALHD
Length:305
Mass (Da):34,310
Last modified:October 1, 2000 - v1
Checksum:iDE4F5E1D185EC8D5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY087463 mRNA. Translation: AAM65008.1.
BT002312 mRNA. Translation: AAN86145.1.
CP002686 Genomic DNA. Translation: AEE76052.1.
AB020749 Genomic DNA. Translation: BAB02026.1.
RefSeqiNP_188442.1. NM_112696.3.
UniGeneiAt.6055.

Genome annotation databases

EnsemblPlantsiAT3G18140.1; AT3G18140.1; AT3G18140.
GeneIDi821339.
GrameneiAT3G18140.1; AT3G18140.1; AT3G18140.

Similar proteinsi

Entry informationi

Entry nameiQ9LV27_ARATH
AccessioniPrimary (citable) accession number: Q9LV27
Entry historyiIntegrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: October 25, 2017
This is version 129 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported