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Q9LUW6 (RH9_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 89. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
DEAD-box ATP-dependent RNA helicase 9

EC=3.6.4.13
Gene names
Name:RH9
Ordered Locus Names:At3g22310
ORF Names:MCB17.17, MCB17.3
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length610 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

ATP + H2O = ADP + phosphate.

Domain

The Q motif is unique to and characteristic of the DEAD box family of RNA helicases and controls ATP binding and hydrolysis.

Sequence similarities

Belongs to the DEAD box helicase family. DDX21/DDX50 subfamily.

Contains 1 helicase ATP-binding domain.

Contains 1 helicase C-terminal domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 610610DEAD-box ATP-dependent RNA helicase 9
PRO_0000239151

Regions

Domain147 – 321175Helicase ATP-binding
Domain350 – 494145Helicase C-terminal
Nucleotide binding160 – 1678ATP By similarity
Motif116 – 14429Q motif
Motif269 – 2724DEAD box
Compositional bias501 – 606106Gly-rich

Sequences

Sequence LengthMass (Da)Tools
Q9LUW6 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: E85F6FAAF3C3C432

FASTA61063,609
        10         20         30         40         50         60 
MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV KSLPSNSSPF 

        70         80         90        100        110        120 
GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG IGDSESVGSS GGGDGLAIAD 

       130        140        150        160        170        180 
LGISPEIVKA LKGRGIEKLF PIQKAVLEPA MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK 

       190        200        210        220        230        240 
FNAKHGRGKN PQCLVLAPTR ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID 

       250        260        270        280        290        300 
VAVGTPGRII DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS 

       310        320        330        340        350        360 
ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI IGPLVKEHGK 

       370        380        390        400        410        420 
GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE RTLAGFRDGN FSILVATDVA 

       430        440        450        460        470        480 
ARGLDVPNVD LVIHYELPNN TETFVHRTGR TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG 

       490        500        510        520        530        540 
SRFNELPSIA VERGSASMFE GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG 

       550        560        570        580        590        600 
SSGRSGGGGG SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG 

       610 
FGSNDGKRSY 

« Hide

References

« Hide 'large scale' references
[1]"Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.
DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[4]"The DEAD box RNA helicase family in Arabidopsis thaliana."
Aubourg S., Kreis M., Lecharny A.
Nucleic Acids Res. 27:628-636(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 248-610.
Strain: cv. Columbia.
[5]"DEAD-box RNA helicases in Arabidopsis thaliana: establishing a link between quantitative expression, gene structure and evolution of a family of genes."
Mingam A., Toffano-Nioche C., Brunaud V., Boudet N., Kreis M., Lecharny A.
Plant Biotechnol. J. 2:401-415(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY, NOMENCLATURE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB022215 Genomic DNA. Translation: BAB01768.1.
CP002686 Genomic DNA. Translation: AEE76620.1.
AY091091 mRNA. Translation: AAM14042.1.
AJ010461 mRNA. Translation: CAA09200.1.
PIRT51341.
RefSeqNP_188870.1. NM_113129.3.
UniGeneAt.25190.

3D structure databases

ProteinModelPortalQ9LUW6.
SMRQ9LUW6. Positions 116-486.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid7132. 9 interactions.
IntActQ9LUW6. 8 interactions.
MINTMINT-8060674.
STRING3702.AT3G22310.1-P.

Proteomic databases

PaxDbQ9LUW6.
PRIDEQ9LUW6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT3G22310.1; AT3G22310.1; AT3G22310.
GeneID821800.
KEGGath:AT3G22310.

Organism-specific databases

GeneFarm922. 59.
TAIRAT3G22310.

Phylogenomic databases

eggNOGCOG0513.
HOGENOMHOG000268800.
InParanoidQ9LUW6.
OMAVSQGRQV.
PhylomeDBQ9LUW6.
ProtClustDBCLSN2684125.

Enzyme and pathway databases

BioCycARA:GQT-373-MONOMER.

Gene expression databases

GenevestigatorQ9LUW6.

Family and domain databases

Gene3D3.40.50.300. 2 hits.
InterProIPR011545. DNA/RNA_helicase_DEAD/DEAH_N.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR014014. RNA_helicase_DEAD_Q_motif.
[Graphical view]
PfamPF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
[Graphical view]
SMARTSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMSSF52540. SSF52540. 1 hit.
PROSITEPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRH9_ARATH
AccessionPrimary (citable) accession number: Q9LUW6
Secondary accession number(s): Q9ZS11
Entry history
Integrated into UniProtKB/Swiss-Prot: May 30, 2006
Last sequence update: October 1, 2000
Last modified: April 16, 2014
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names