Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

DEAD-box ATP-dependent RNA helicase 9

Gene

RH9

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Catalytic activityi

ATP + H2O = ADP + phosphate.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi160 – 167ATPPROSITE-ProRule annotation8

GO - Molecular functioni

  • ATP binding Source: UniProtKB-KW
  • ATP-dependent RNA helicase activity Source: GO_Central
  • DNA binding Source: TAIR
  • RNA binding Source: TAIR

GO - Biological processi

  • response to cold Source: TAIR
  • response to salt stress Source: TAIR
  • response to water deprivation Source: TAIR
  • RNA secondary structure unwinding Source: GO_Central
  • viral RNA genome replication Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Helicase, Hydrolase

Keywords - Ligandi

ATP-binding, Nucleotide-binding, RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DEAD-box ATP-dependent RNA helicase 9 (EC:3.6.4.13)
Gene namesi
Name:RH9
Ordered Locus Names:At3g22310
ORF Names:MCB17.17, MCB17.3
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G22310.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: TAIR
  • protein complex Source: TAIR
  • viral replication complex Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002391511 – 610DEAD-box ATP-dependent RNA helicase 9Add BLAST610

Proteomic databases

PaxDbiQ9LUW6.
PRIDEiQ9LUW6.

PTM databases

iPTMnetiQ9LUW6.

Expressioni

Gene expression databases

GenevisibleiQ9LUW6. AT.

Interactioni

Protein-protein interaction databases

BioGridi7132. 10 interactors.
IntActiQ9LUW6. 8 interactors.
MINTiMINT-8060674.
STRINGi3702.AT3G22310.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LUW6.
SMRiQ9LUW6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini147 – 321Helicase ATP-bindingPROSITE-ProRule annotationAdd BLAST175
Domaini350 – 494Helicase C-terminalPROSITE-ProRule annotationAdd BLAST145

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi116 – 144Q motifAdd BLAST29
Motifi269 – 272DEAD box4

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi501 – 606Gly-richAdd BLAST106

Domaini

The Q motif is unique to and characteristic of the DEAD box family of RNA helicases and controls ATP binding and hydrolysis.

Sequence similaritiesi

Contains 1 helicase ATP-binding domain.PROSITE-ProRule annotation
Contains 1 helicase C-terminal domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0331. Eukaryota.
COG0513. LUCA.
HOGENOMiHOG000268800.
InParanoidiQ9LUW6.
OMAiGITMYSI.
OrthoDBiEOG09360DS2.
PhylomeDBiQ9LUW6.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR014014. RNA_helicase_DEAD_Q_motif.
[Graphical view]
PfamiPF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LUW6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV
60 70 80 90 100
KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
110 120 130 140 150
IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA
160 170 180 190 200
MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
210 220 230 240 250
ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII
260 270 280 290 300
DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
310 320 330 340 350
ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI
360 370 380 390 400
IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
410 420 430 440 450
RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR
460 470 480 490 500
TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
510 520 530 540 550
GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG
560 570 580 590 600
SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
610
FGSNDGKRSY
Length:610
Mass (Da):63,609
Last modified:October 1, 2000 - v1
Checksum:iE85F6FAAF3C3C432
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB022215 Genomic DNA. Translation: BAB01768.1.
CP002686 Genomic DNA. Translation: AEE76620.1.
AY091091 mRNA. Translation: AAM14042.1.
AJ010461 mRNA. Translation: CAA09200.1.
PIRiT51341.
RefSeqiNP_188870.1. NM_113129.4.
UniGeneiAt.25190.

Genome annotation databases

EnsemblPlantsiAT3G22310.1; AT3G22310.1; AT3G22310.
GeneIDi821800.
GrameneiAT3G22310.1; AT3G22310.1; AT3G22310.
KEGGiath:AT3G22310.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB022215 Genomic DNA. Translation: BAB01768.1.
CP002686 Genomic DNA. Translation: AEE76620.1.
AY091091 mRNA. Translation: AAM14042.1.
AJ010461 mRNA. Translation: CAA09200.1.
PIRiT51341.
RefSeqiNP_188870.1. NM_113129.4.
UniGeneiAt.25190.

3D structure databases

ProteinModelPortaliQ9LUW6.
SMRiQ9LUW6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi7132. 10 interactors.
IntActiQ9LUW6. 8 interactors.
MINTiMINT-8060674.
STRINGi3702.AT3G22310.1.

PTM databases

iPTMnetiQ9LUW6.

Proteomic databases

PaxDbiQ9LUW6.
PRIDEiQ9LUW6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G22310.1; AT3G22310.1; AT3G22310.
GeneIDi821800.
GrameneiAT3G22310.1; AT3G22310.1; AT3G22310.
KEGGiath:AT3G22310.

Organism-specific databases

TAIRiAT3G22310.

Phylogenomic databases

eggNOGiKOG0331. Eukaryota.
COG0513. LUCA.
HOGENOMiHOG000268800.
InParanoidiQ9LUW6.
OMAiGITMYSI.
OrthoDBiEOG09360DS2.
PhylomeDBiQ9LUW6.

Miscellaneous databases

PROiQ9LUW6.

Gene expression databases

GenevisibleiQ9LUW6. AT.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR014014. RNA_helicase_DEAD_Q_motif.
[Graphical view]
PfamiPF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRH9_ARATH
AccessioniPrimary (citable) accession number: Q9LUW6
Secondary accession number(s): Q9ZS11
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2006
Last sequence update: October 1, 2000
Last modified: November 30, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.