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Q9LUW6

- RH9_ARATH

UniProt

Q9LUW6 - RH9_ARATH

Protein

DEAD-box ATP-dependent RNA helicase 9

Gene

RH9

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 92 (01 Oct 2014)
      Sequence version 1 (01 Oct 2000)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + H2O = ADP + phosphate.

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi160 – 1678ATPPROSITE-ProRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: TAIR
    3. helicase activity Source: UniProtKB-KW
    4. RNA binding Source: TAIR

    GO - Biological processi

    1. response to cold Source: TAIR
    2. response to salt stress Source: TAIR
    3. response to water deprivation Source: TAIR

    Keywords - Molecular functioni

    Helicase, Hydrolase

    Keywords - Ligandi

    ATP-binding, Nucleotide-binding, RNA-binding

    Enzyme and pathway databases

    BioCyciARA:GQT-373-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DEAD-box ATP-dependent RNA helicase 9 (EC:3.6.4.13)
    Gene namesi
    Name:RH9
    Ordered Locus Names:At3g22310
    ORF Names:MCB17.17, MCB17.3
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 3

    Organism-specific databases

    TAIRiAT3G22310.

    Subcellular locationi

    GO - Cellular componenti

    1. protein complex Source: TAIR

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 610610DEAD-box ATP-dependent RNA helicase 9PRO_0000239151Add
    BLAST

    Proteomic databases

    PaxDbiQ9LUW6.
    PRIDEiQ9LUW6.

    Expressioni

    Gene expression databases

    GenevestigatoriQ9LUW6.

    Interactioni

    Protein-protein interaction databases

    BioGridi7132. 9 interactions.
    IntActiQ9LUW6. 8 interactions.
    MINTiMINT-8060674.
    STRINGi3702.AT3G22310.1-P.

    Structurei

    3D structure databases

    ProteinModelPortaliQ9LUW6.
    SMRiQ9LUW6. Positions 116-486.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini147 – 321175Helicase ATP-bindingPROSITE-ProRule annotationAdd
    BLAST
    Domaini350 – 494145Helicase C-terminalPROSITE-ProRule annotationAdd
    BLAST

    Motif

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Motifi116 – 14429Q motifAdd
    BLAST
    Motifi269 – 2724DEAD box

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi501 – 606106Gly-richAdd
    BLAST

    Domaini

    The Q motif is unique to and characteristic of the DEAD box family of RNA helicases and controls ATP binding and hydrolysis.

    Sequence similaritiesi

    Contains 1 helicase ATP-binding domain.PROSITE-ProRule annotation
    Contains 1 helicase C-terminal domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiCOG0513.
    HOGENOMiHOG000268800.
    InParanoidiQ9LUW6.
    OMAiITMYSIA.
    PhylomeDBiQ9LUW6.

    Family and domain databases

    Gene3Di3.40.50.300. 2 hits.
    InterProiIPR011545. DNA/RNA_helicase_DEAD/DEAH_N.
    IPR014001. Helicase_ATP-bd.
    IPR001650. Helicase_C.
    IPR027417. P-loop_NTPase.
    IPR014014. RNA_helicase_DEAD_Q_motif.
    [Graphical view]
    PfamiPF00270. DEAD. 1 hit.
    PF00271. Helicase_C. 1 hit.
    [Graphical view]
    SMARTiSM00487. DEXDc. 1 hit.
    SM00490. HELICc. 1 hit.
    [Graphical view]
    SUPFAMiSSF52540. SSF52540. 1 hit.
    PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
    PS51194. HELICASE_CTER. 1 hit.
    PS51195. Q_MOTIF. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9LUW6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV    50
    KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG 100
    IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA 150
    MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR 200
    ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII 250
    DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS 300
    ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI 350
    IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE 400
    RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR 450
    TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE 500
    GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG 550
    SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG 600
    FGSNDGKRSY 610
    Length:610
    Mass (Da):63,609
    Last modified:October 1, 2000 - v1
    Checksum:iE85F6FAAF3C3C432
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB022215 Genomic DNA. Translation: BAB01768.1.
    CP002686 Genomic DNA. Translation: AEE76620.1.
    AY091091 mRNA. Translation: AAM14042.1.
    AJ010461 mRNA. Translation: CAA09200.1.
    PIRiT51341.
    RefSeqiNP_188870.1. NM_113129.3.
    UniGeneiAt.25190.

    Genome annotation databases

    EnsemblPlantsiAT3G22310.1; AT3G22310.1; AT3G22310.
    GeneIDi821800.
    KEGGiath:AT3G22310.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB022215 Genomic DNA. Translation: BAB01768.1 .
    CP002686 Genomic DNA. Translation: AEE76620.1 .
    AY091091 mRNA. Translation: AAM14042.1 .
    AJ010461 mRNA. Translation: CAA09200.1 .
    PIRi T51341.
    RefSeqi NP_188870.1. NM_113129.3.
    UniGenei At.25190.

    3D structure databases

    ProteinModelPortali Q9LUW6.
    SMRi Q9LUW6. Positions 116-486.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 7132. 9 interactions.
    IntActi Q9LUW6. 8 interactions.
    MINTi MINT-8060674.
    STRINGi 3702.AT3G22310.1-P.

    Proteomic databases

    PaxDbi Q9LUW6.
    PRIDEi Q9LUW6.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT3G22310.1 ; AT3G22310.1 ; AT3G22310 .
    GeneIDi 821800.
    KEGGi ath:AT3G22310.

    Organism-specific databases

    GeneFarmi 922. 59.
    TAIRi AT3G22310.

    Phylogenomic databases

    eggNOGi COG0513.
    HOGENOMi HOG000268800.
    InParanoidi Q9LUW6.
    OMAi ITMYSIA.
    PhylomeDBi Q9LUW6.

    Enzyme and pathway databases

    BioCyci ARA:GQT-373-MONOMER.

    Gene expression databases

    Genevestigatori Q9LUW6.

    Family and domain databases

    Gene3Di 3.40.50.300. 2 hits.
    InterProi IPR011545. DNA/RNA_helicase_DEAD/DEAH_N.
    IPR014001. Helicase_ATP-bd.
    IPR001650. Helicase_C.
    IPR027417. P-loop_NTPase.
    IPR014014. RNA_helicase_DEAD_Q_motif.
    [Graphical view ]
    Pfami PF00270. DEAD. 1 hit.
    PF00271. Helicase_C. 1 hit.
    [Graphical view ]
    SMARTi SM00487. DEXDc. 1 hit.
    SM00490. HELICc. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52540. SSF52540. 1 hit.
    PROSITEi PS51192. HELICASE_ATP_BIND_1. 1 hit.
    PS51194. HELICASE_CTER. 1 hit.
    PS51195. Q_MOTIF. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
      Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.
      DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    4. "The DEAD box RNA helicase family in Arabidopsis thaliana."
      Aubourg S., Kreis M., Lecharny A.
      Nucleic Acids Res. 27:628-636(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 248-610.
      Strain: cv. Columbia.
    5. "DEAD-box RNA helicases in Arabidopsis thaliana: establishing a link between quantitative expression, gene structure and evolution of a family of genes."
      Mingam A., Toffano-Nioche C., Brunaud V., Boudet N., Kreis M., Lecharny A.
      Plant Biotechnol. J. 2:401-415(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiRH9_ARATH
    AccessioniPrimary (citable) accession number: Q9LUW6
    Secondary accession number(s): Q9ZS11
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 30, 2006
    Last sequence update: October 1, 2000
    Last modified: October 1, 2014
    This is version 92 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3