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Protein

DEAD-box ATP-dependent RNA helicase 9, mitochondrial

Gene

RH9

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Catalytic activityi

ATP + H2O = ADP + phosphate.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi160 – 167ATPPROSITE-ProRule annotation8

GO - Molecular functioni

  • ATP binding Source: UniProtKB-KW
  • ATP-dependent RNA helicase activity Source: GO_Central
  • DNA binding Source: TAIR
  • RNA binding Source: TAIR

GO - Biological processi

  • response to cold Source: TAIR
  • response to salt stress Source: TAIR
  • response to water deprivation Source: TAIR
  • RNA secondary structure unwinding Source: GO_Central
  • viral RNA genome replication Source: TAIR

Keywordsi

Molecular functionHelicase, Hydrolase, RNA-binding
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DEAD-box ATP-dependent RNA helicase 9, mitochondrial (EC:3.6.4.13)
Gene namesi
Name:RH9
Ordered Locus Names:At3g22310
ORF Names:MCB17.17, MCB17.3
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G22310.
TAIRilocus:2087832. AT3G22310.

Subcellular locationi

  • Mitochondrion 1 Publication

GO - Cellular componenti

  • cytoplasm Source: TAIR
  • nucleolus Source: GO_Central
  • protein complex Source: TAIR
  • viral replication complex Source: TAIR

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 66Mitochondrion1 PublicationAdd BLAST66
ChainiPRO_000023915167 – 610DEAD-box ATP-dependent RNA helicase 9, mitochondrialAdd BLAST544

Proteomic databases

PaxDbiQ9LUW6.
PRIDEiQ9LUW6.

PTM databases

iPTMnetiQ9LUW6.

Expressioni

Gene expression databases

ExpressionAtlasiQ9LUW6. baseline and differential.
GenevisibleiQ9LUW6. AT.

Interactioni

Protein-protein interaction databases

BioGridi7132. 10 interactors.
IntActiQ9LUW6. 8 interactors.
MINTiMINT-8060674.
STRINGi3702.AT3G22310.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LUW6.
SMRiQ9LUW6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini147 – 321Helicase ATP-bindingPROSITE-ProRule annotationAdd BLAST175
Domaini350 – 494Helicase C-terminalPROSITE-ProRule annotationAdd BLAST145

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi116 – 144Q motifAdd BLAST29
Motifi269 – 272DEAD box4

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi501 – 606Gly-richAdd BLAST106

Domaini

The Q motif is unique to and characteristic of the DEAD box family of RNA helicases and controls ATP binding and hydrolysis.

Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiKOG0331. Eukaryota.
COG0513. LUCA.
HOGENOMiHOG000268800.
InParanoidiQ9LUW6.
OMAiILIYTND.
OrthoDBiEOG09360DS2.
PhylomeDBiQ9LUW6.

Family and domain databases

InterProiView protein in InterPro
IPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR014014. RNA_helicase_DEAD_Q_motif.
PfamiView protein in Pfam
PF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
SMARTiView protein in SMART
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiView protein in PROSITE
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LUW6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV
60 70 80 90 100
KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
110 120 130 140 150
IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA
160 170 180 190 200
MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
210 220 230 240 250
ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII
260 270 280 290 300
DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
310 320 330 340 350
ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI
360 370 380 390 400
IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
410 420 430 440 450
RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR
460 470 480 490 500
TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
510 520 530 540 550
GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG
560 570 580 590 600
SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
610
FGSNDGKRSY
Length:610
Mass (Da):63,609
Last modified:October 1, 2000 - v1
Checksum:iE85F6FAAF3C3C432
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB022215 Genomic DNA. Translation: BAB01768.1.
CP002686 Genomic DNA. Translation: AEE76620.1.
AY091091 mRNA. Translation: AAM14042.1.
AJ010461 mRNA. Translation: CAA09200.1.
PIRiT51341.
RefSeqiNP_188870.1. NM_113129.4.
UniGeneiAt.25190.

Genome annotation databases

EnsemblPlantsiAT3G22310.1; AT3G22310.1; AT3G22310.
GeneIDi821800.
GrameneiAT3G22310.1; AT3G22310.1; AT3G22310.
KEGGiath:AT3G22310.

Similar proteinsi

Entry informationi

Entry nameiRH9_ARATH
AccessioniPrimary (citable) accession number: Q9LUW6
Secondary accession number(s): Q9ZS11
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2006
Last sequence update: October 1, 2000
Last modified: August 30, 2017
This is version 112 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families