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Q9LUW6

- RH9_ARATH

UniProt

Q9LUW6 - RH9_ARATH

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Protein

DEAD-box ATP-dependent RNA helicase 9

Gene

RH9

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli

Functioni

Catalytic activityi

ATP + H2O = ADP + phosphate.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi160 – 1678ATPPROSITE-ProRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: TAIR
  3. helicase activity Source: UniProtKB-KW
  4. RNA binding Source: TAIR

GO - Biological processi

  1. response to cold Source: TAIR
  2. response to salt stress Source: TAIR
  3. response to water deprivation Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Helicase, Hydrolase

Keywords - Ligandi

ATP-binding, Nucleotide-binding, RNA-binding

Enzyme and pathway databases

BioCyciARA:GQT-373-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DEAD-box ATP-dependent RNA helicase 9 (EC:3.6.4.13)
Gene namesi
Name:RH9
Ordered Locus Names:At3g22310
ORF Names:MCB17.17, MCB17.3
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 3

Organism-specific databases

TAIRiAT3G22310.

Subcellular locationi

GO - Cellular componenti

  1. protein complex Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 610610DEAD-box ATP-dependent RNA helicase 9PRO_0000239151Add
BLAST

Proteomic databases

PaxDbiQ9LUW6.
PRIDEiQ9LUW6.

Expressioni

Gene expression databases

GenevestigatoriQ9LUW6.

Interactioni

Protein-protein interaction databases

BioGridi7132. 9 interactions.
IntActiQ9LUW6. 8 interactions.
MINTiMINT-8060674.
STRINGi3702.AT3G22310.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ9LUW6.
SMRiQ9LUW6. Positions 116-486.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini147 – 321175Helicase ATP-bindingPROSITE-ProRule annotationAdd
BLAST
Domaini350 – 494145Helicase C-terminalPROSITE-ProRule annotationAdd
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi116 – 14429Q motifAdd
BLAST
Motifi269 – 2724DEAD box

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi501 – 606106Gly-richAdd
BLAST

Domaini

The Q motif is unique to and characteristic of the DEAD box family of RNA helicases and controls ATP binding and hydrolysis.

Sequence similaritiesi

Contains 1 helicase ATP-binding domain.PROSITE-ProRule annotation
Contains 1 helicase C-terminal domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG0513.
HOGENOMiHOG000268800.
InParanoidiQ9LUW6.
OMAiITMYSIA.
PhylomeDBiQ9LUW6.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR014014. RNA_helicase_DEAD_Q_motif.
[Graphical view]
PfamiPF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
[Graphical view]
SMARTiSM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LUW6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MISTVLRRSI LGTSRRTLAA SVTSINAALF HNLAPAAATV SDLANGATNV
60 70 80 90 100
KSLPSNSSPF GVKVRDFHVK SVPSEFRSSI VSSAGFAAQE YAPSYENDGG
110 120 130 140 150
IGDSESVGSS GGGDGLAIAD LGISPEIVKA LKGRGIEKLF PIQKAVLEPA
160 170 180 190 200
MEGRDMIGRA RTGTGKTLAF GIPIIDKIIK FNAKHGRGKN PQCLVLAPTR
210 220 230 240 250
ELARQVEKEF RESAPSLDTI CLYGGTPIGQ QMRELNYGID VAVGTPGRII
260 270 280 290 300
DLMKRGALNL SEVQFVVLDE ADQMLQVGFA EDVEIILQKL PAKRQSMMFS
310 320 330 340 350
ATMPSWIRSL TKKYLNNPLT IDLVGDSDQK LADGITMYSI AADSYGRASI
360 370 380 390 400
IGPLVKEHGK GGKCIVFTQT KRDADRLAFG LAKSYKCEAL HGDISQAQRE
410 420 430 440 450
RTLAGFRDGN FSILVATDVA ARGLDVPNVD LVIHYELPNN TETFVHRTGR
460 470 480 490 500
TGRAGKKGSA ILIHGQDQTR AVKMIEKEVG SRFNELPSIA VERGSASMFE
510 520 530 540 550
GVGARSGGSF GGGRSGGGGY GSYGSSSGRS GGGSYGGYGG SSGRSGGGGG
560 570 580 590 600
SYGGSGGSSS RYSGGSDRSS GFGSFGSGGS SGGFGSDRSS QSSGRSSFGG
610
FGSNDGKRSY
Length:610
Mass (Da):63,609
Last modified:October 1, 2000 - v1
Checksum:iE85F6FAAF3C3C432
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB022215 Genomic DNA. Translation: BAB01768.1.
CP002686 Genomic DNA. Translation: AEE76620.1.
AY091091 mRNA. Translation: AAM14042.1.
AJ010461 mRNA. Translation: CAA09200.1.
PIRiT51341.
RefSeqiNP_188870.1. NM_113129.3.
UniGeneiAt.25190.

Genome annotation databases

EnsemblPlantsiAT3G22310.1; AT3G22310.1; AT3G22310.
GeneIDi821800.
KEGGiath:AT3G22310.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB022215 Genomic DNA. Translation: BAB01768.1 .
CP002686 Genomic DNA. Translation: AEE76620.1 .
AY091091 mRNA. Translation: AAM14042.1 .
AJ010461 mRNA. Translation: CAA09200.1 .
PIRi T51341.
RefSeqi NP_188870.1. NM_113129.3.
UniGenei At.25190.

3D structure databases

ProteinModelPortali Q9LUW6.
SMRi Q9LUW6. Positions 116-486.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 7132. 9 interactions.
IntActi Q9LUW6. 8 interactions.
MINTi MINT-8060674.
STRINGi 3702.AT3G22310.1-P.

Proteomic databases

PaxDbi Q9LUW6.
PRIDEi Q9LUW6.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT3G22310.1 ; AT3G22310.1 ; AT3G22310 .
GeneIDi 821800.
KEGGi ath:AT3G22310.

Organism-specific databases

GeneFarmi 922. 59.
TAIRi AT3G22310.

Phylogenomic databases

eggNOGi COG0513.
HOGENOMi HOG000268800.
InParanoidi Q9LUW6.
OMAi ITMYSIA.
PhylomeDBi Q9LUW6.

Enzyme and pathway databases

BioCyci ARA:GQT-373-MONOMER.

Gene expression databases

Genevestigatori Q9LUW6.

Family and domain databases

Gene3Di 3.40.50.300. 2 hits.
InterProi IPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR014014. RNA_helicase_DEAD_Q_motif.
[Graphical view ]
Pfami PF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
[Graphical view ]
SMARTi SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 1 hit.
PROSITEi PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
    Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.
    DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "The DEAD box RNA helicase family in Arabidopsis thaliana."
    Aubourg S., Kreis M., Lecharny A.
    Nucleic Acids Res. 27:628-636(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 248-610.
    Strain: cv. Columbia.
  5. "DEAD-box RNA helicases in Arabidopsis thaliana: establishing a link between quantitative expression, gene structure and evolution of a family of genes."
    Mingam A., Toffano-Nioche C., Brunaud V., Boudet N., Kreis M., Lecharny A.
    Plant Biotechnol. J. 2:401-415(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiRH9_ARATH
AccessioniPrimary (citable) accession number: Q9LUW6
Secondary accession number(s): Q9ZS11
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2006
Last sequence update: October 1, 2000
Last modified: October 29, 2014
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3