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Q9LUV2 (POP3_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 83. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable protein Pop3
Gene names
Ordered Locus Names:At3g17210
ORF Names:MGD8.2
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length109 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Cofactor

Magnesium.

Subunit structure

Homodimer. Ref.7

Sequence similarities

Contains 1 stress-response A/B barrel domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 109109Probable protein Pop3
PRO_0000058515

Regions

Domain8 – 10295Stress-response A/B barrel

Sites

Metal binding361Magnesium; via carbonyl oxygen
Metal binding391Magnesium; via carbonyl oxygen
Metal binding401Magnesium; via carbonyl oxygen
Metal binding421Magnesium; via carbonyl oxygen

Experimental info

Sequence conflict851E → K in AAM63750. Ref.4

Secondary structure

................... 109
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q9LUV2 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: B498426DDC5F9F37

FASTA10912,184
        10         20         30         40         50         60 
MEEAKGPVKH VLLASFKDGV SPEKIEELIK GYANLVNLIE PMKAFHWGKD VSIENLHQGY 

        70         80         90        100 
THIFESTFES KEAVAEYIAH PAHVEFATIF LGSLDKVLVI DYKPTSVSL 

« Hide

References

« Hide 'large scale' references
[1]"Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.
DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[4]"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K. expand/collapse author list , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[5]"Full-length cDNA from Arabidopsis thaliana."
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
[6]"Structure of the hypothetical protein At3g17210 from Arabidopsis thaliana."
Lytle B.L., Peterson F.C., Kjer K.L., Frederick R.O., Zhao Q., Thao S., Bingman C., Johnson K.A., Phillips G.N. Jr., Volkman B.F.
J. Biomol. NMR 28:397-400(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY NMR.
[7]"Crystal structure of the protein from gene At3g17210 of Arabidopsis thaliana."
Bingman C.A., Johnson K.A., Peterson F.C., Frederick R.O., Zhao Q., Thao S., Fox B.G., Volkman B.F., Jeon W.B., Smith D.W., Newman C.S., Ulrich E.L., Hegeman A., Sussman M.R., Markley J.L., Phillips G.N. Jr.
Proteins 57:218-220(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.9 ANGSTROMS), SUBUNIT, METAL BINDING.
[8]"Ensemble refinement of protein crystal structures: validation and application."
Levin E.J., Kondrashov D.A., Wesenberg G.E., Phillips G.N. Jr.
Structure 15:1040-1052(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) IN COMPLEX WITH MAGNESIUM.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB022216 Genomic DNA. Translation: BAB02723.1.
CP002686 Genomic DNA. Translation: AEE75921.1.
AF370462 mRNA. Translation: AAK43839.1.
AY064673 mRNA. Translation: AAL47379.1.
AK230465 mRNA. Translation: BAF02259.1.
AY086696 mRNA. Translation: AAM63750.1.
RefSeqNP_566569.1. NM_112598.3.
UniGeneAt.25332.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1Q4RX-ray1.90A1-109[»]
1Q53NMR-A/B1-109[»]
2Q3PX-ray1.90A1-109[»]
ProteinModelPortalQ9LUV2.
SMRQ9LUV2. Positions 1-109.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid6313. 1 interaction.
IntActQ9LUV2. 1 interaction.

Proteomic databases

PaxDbQ9LUV2.
PRIDEQ9LUV2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT3G17210.1; AT3G17210.1; AT3G17210.
GeneID820980.
KEGGath:AT3G17210.

Organism-specific databases

TAIRAT3G17210.

Phylogenomic databases

eggNOGNOG14742.
HOGENOMHOG000245859.
InParanoidQ9LUV2.
OMAHIFESTF.
PhylomeDBQ9LUV2.
ProtClustDBCLSN2688477.

Gene expression databases

GenevestigatorQ9LUV2.

Family and domain databases

InterProIPR013097. Dabb.
IPR011008. Dimeric_a/b-barrel.
[Graphical view]
PfamPF07876. Dabb. 1 hit.
[Graphical view]
SMARTSM00886. Dabb. 1 hit.
[Graphical view]
SUPFAMSSF54909. SSF54909. 1 hit.
PROSITEPS51502. S_R_A_B_BARREL. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ9LUV2.

Entry information

Entry namePOP3_ARATH
AccessionPrimary (citable) accession number: Q9LUV2
Secondary accession number(s): Q0WKU8, Q8LCB1
Entry history
Integrated into UniProtKB/Swiss-Prot: August 16, 2004
Last sequence update: October 1, 2000
Last modified: February 19, 2014
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names