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Q9LUV2

- POP3_ARATH

UniProt

Q9LUV2 - POP3_ARATH

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Protein

Probable protein Pop3

Gene

At3g17210

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

Cofactori

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi36 – 361Magnesium; via carbonyl oxygen1 Publication
Metal bindingi39 – 391Magnesium; via carbonyl oxygen1 Publication
Metal bindingi40 – 401Magnesium; via carbonyl oxygen1 Publication
Metal bindingi42 – 421Magnesium; via carbonyl oxygen1 Publication

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. defense response to bacterium Source: TAIR
  2. defense response to fungus Source: TAIR
Complete GO annotation...

Keywords - Ligandi

Magnesium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable protein Pop3
Gene namesi
Ordered Locus Names:At3g17210
ORF Names:MGD8.2
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 3

Organism-specific databases

TAIRiAT3G17210.

Subcellular locationi

GO - Cellular componenti

  1. cytosol Source: TAIR
  2. plasma membrane Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 109109Probable protein Pop3PRO_0000058515Add
BLAST

Proteomic databases

PaxDbiQ9LUV2.
PRIDEiQ9LUV2.

Expressioni

Gene expression databases

GenevestigatoriQ9LUV2.

Interactioni

Subunit structurei

Homodimer.2 Publications

Protein-protein interaction databases

BioGridi6313. 1 interaction.
IntActiQ9LUV2. 1 interaction.

Structurei

Secondary structure

1
109
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi8 – 169Combined sources
Helixi22 – 3312Combined sources
Helixi35 – 384Combined sources
Beta strandi44 – 496Combined sources
Beta strandi53 – 553Combined sources
Beta strandi62 – 698Combined sources
Helixi71 – 799Combined sources
Helixi81 – 9212Combined sources
Beta strandi94 – 1029Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1Q4RX-ray1.90A1-109[»]
1Q53NMR-A/B1-109[»]
2Q3PX-ray1.90A1-109[»]
ProteinModelPortaliQ9LUV2.
SMRiQ9LUV2. Positions 1-109.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9LUV2.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini8 – 10295Stress-response A/B barrelPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 stress-response A/B barrel domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiNOG14742.
HOGENOMiHOG000245859.
InParanoidiQ9LUV2.
OMAiKMIANNA.
PhylomeDBiQ9LUV2.

Family and domain databases

InterProiIPR013097. Dabb.
IPR011008. Dimeric_a/b-barrel.
[Graphical view]
PfamiPF07876. Dabb. 1 hit.
[Graphical view]
SMARTiSM00886. Dabb. 1 hit.
[Graphical view]
SUPFAMiSSF54909. SSF54909. 1 hit.
PROSITEiPS51502. S_R_A_B_BARREL. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LUV2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEEAKGPVKH VLLASFKDGV SPEKIEELIK GYANLVNLIE PMKAFHWGKD
60 70 80 90 100
VSIENLHQGY THIFESTFES KEAVAEYIAH PAHVEFATIF LGSLDKVLVI

DYKPTSVSL
Length:109
Mass (Da):12,184
Last modified:October 1, 2000 - v1
Checksum:iB498426DDC5F9F37
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti85 – 851E → K in AAM63750. 1 PublicationCurated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB022216 Genomic DNA. Translation: BAB02723.1.
CP002686 Genomic DNA. Translation: AEE75921.1.
AF370462 mRNA. Translation: AAK43839.1.
AY064673 mRNA. Translation: AAL47379.1.
AK230465 mRNA. Translation: BAF02259.1.
AY086696 mRNA. Translation: AAM63750.1.
RefSeqiNP_566569.1. NM_112598.3.
UniGeneiAt.25332.

Genome annotation databases

EnsemblPlantsiAT3G17210.1; AT3G17210.1; AT3G17210.
GeneIDi820980.
KEGGiath:AT3G17210.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB022216 Genomic DNA. Translation: BAB02723.1 .
CP002686 Genomic DNA. Translation: AEE75921.1 .
AF370462 mRNA. Translation: AAK43839.1 .
AY064673 mRNA. Translation: AAL47379.1 .
AK230465 mRNA. Translation: BAF02259.1 .
AY086696 mRNA. Translation: AAM63750.1 .
RefSeqi NP_566569.1. NM_112598.3.
UniGenei At.25332.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1Q4R X-ray 1.90 A 1-109 [» ]
1Q53 NMR - A/B 1-109 [» ]
2Q3P X-ray 1.90 A 1-109 [» ]
ProteinModelPortali Q9LUV2.
SMRi Q9LUV2. Positions 1-109.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 6313. 1 interaction.
IntActi Q9LUV2. 1 interaction.

Proteomic databases

PaxDbi Q9LUV2.
PRIDEi Q9LUV2.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT3G17210.1 ; AT3G17210.1 ; AT3G17210 .
GeneIDi 820980.
KEGGi ath:AT3G17210.

Organism-specific databases

TAIRi AT3G17210.

Phylogenomic databases

eggNOGi NOG14742.
HOGENOMi HOG000245859.
InParanoidi Q9LUV2.
OMAi KMIANNA.
PhylomeDBi Q9LUV2.

Miscellaneous databases

EvolutionaryTracei Q9LUV2.

Gene expression databases

Genevestigatori Q9LUV2.

Family and domain databases

InterProi IPR013097. Dabb.
IPR011008. Dimeric_a/b-barrel.
[Graphical view ]
Pfami PF07876. Dabb. 1 hit.
[Graphical view ]
SMARTi SM00886. Dabb. 1 hit.
[Graphical view ]
SUPFAMi SSF54909. SSF54909. 1 hit.
PROSITEi PS51502. S_R_A_B_BARREL. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
    Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.
    DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
    , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  6. Cited for: STRUCTURE BY NMR.
  7. Cited for: X-RAY CRYSTALLOGRAPHY (1.9 ANGSTROMS), SUBUNIT, METAL BINDING.
  8. "Ensemble refinement of protein crystal structures: validation and application."
    Levin E.J., Kondrashov D.A., Wesenberg G.E., Phillips G.N. Jr.
    Structure 15:1040-1052(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) IN COMPLEX WITH MAGNESIUM.

Entry informationi

Entry nameiPOP3_ARATH
AccessioniPrimary (citable) accession number: Q9LUV2
Secondary accession number(s): Q0WKU8, Q8LCB1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2004
Last sequence update: October 1, 2000
Last modified: November 26, 2014
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3