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Q9LUV2

- POP3_ARATH

UniProt

Q9LUV2 - POP3_ARATH

Protein

Probable protein Pop3

Gene

At3g17210

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Cofactori

    Magnesium.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi36 – 361Magnesium; via carbonyl oxygen1 Publication
    Metal bindingi39 – 391Magnesium; via carbonyl oxygen1 Publication
    Metal bindingi40 – 401Magnesium; via carbonyl oxygen1 Publication
    Metal bindingi42 – 421Magnesium; via carbonyl oxygen1 Publication

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. defense response to bacterium Source: TAIR
    2. defense response to fungus Source: TAIR

    Keywords - Ligandi

    Magnesium, Metal-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable protein Pop3
    Gene namesi
    Ordered Locus Names:At3g17210
    ORF Names:MGD8.2
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 3

    Organism-specific databases

    TAIRiAT3G17210.

    Subcellular locationi

    GO - Cellular componenti

    1. cytosol Source: TAIR
    2. plasma membrane Source: TAIR

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 109109Probable protein Pop3PRO_0000058515Add
    BLAST

    Proteomic databases

    PaxDbiQ9LUV2.
    PRIDEiQ9LUV2.

    Expressioni

    Gene expression databases

    GenevestigatoriQ9LUV2.

    Interactioni

    Subunit structurei

    Homodimer.2 Publications

    Protein-protein interaction databases

    BioGridi6313. 1 interaction.
    IntActiQ9LUV2. 1 interaction.

    Structurei

    Secondary structure

    1
    109
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi8 – 169
    Helixi22 – 3312
    Helixi35 – 384
    Beta strandi44 – 496
    Beta strandi53 – 553
    Beta strandi62 – 698
    Helixi71 – 799
    Helixi81 – 9212
    Beta strandi94 – 1029

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1Q4RX-ray1.90A1-109[»]
    1Q53NMR-A/B1-109[»]
    2Q3PX-ray1.90A1-109[»]
    ProteinModelPortaliQ9LUV2.
    SMRiQ9LUV2. Positions 1-109.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ9LUV2.

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini8 – 10295Stress-response A/B barrelPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 stress-response A/B barrel domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiNOG14742.
    HOGENOMiHOG000245859.
    InParanoidiQ9LUV2.
    OMAiKMIANNA.
    PhylomeDBiQ9LUV2.

    Family and domain databases

    InterProiIPR013097. Dabb.
    IPR011008. Dimeric_a/b-barrel.
    [Graphical view]
    PfamiPF07876. Dabb. 1 hit.
    [Graphical view]
    SMARTiSM00886. Dabb. 1 hit.
    [Graphical view]
    SUPFAMiSSF54909. SSF54909. 1 hit.
    PROSITEiPS51502. S_R_A_B_BARREL. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q9LUV2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEEAKGPVKH VLLASFKDGV SPEKIEELIK GYANLVNLIE PMKAFHWGKD    50
    VSIENLHQGY THIFESTFES KEAVAEYIAH PAHVEFATIF LGSLDKVLVI 100
    DYKPTSVSL 109
    Length:109
    Mass (Da):12,184
    Last modified:October 1, 2000 - v1
    Checksum:iB498426DDC5F9F37
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti85 – 851E → K in AAM63750. 1 PublicationCurated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB022216 Genomic DNA. Translation: BAB02723.1.
    CP002686 Genomic DNA. Translation: AEE75921.1.
    AF370462 mRNA. Translation: AAK43839.1.
    AY064673 mRNA. Translation: AAL47379.1.
    AK230465 mRNA. Translation: BAF02259.1.
    AY086696 mRNA. Translation: AAM63750.1.
    RefSeqiNP_566569.1. NM_112598.3.
    UniGeneiAt.25332.

    Genome annotation databases

    EnsemblPlantsiAT3G17210.1; AT3G17210.1; AT3G17210.
    GeneIDi820980.
    KEGGiath:AT3G17210.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB022216 Genomic DNA. Translation: BAB02723.1 .
    CP002686 Genomic DNA. Translation: AEE75921.1 .
    AF370462 mRNA. Translation: AAK43839.1 .
    AY064673 mRNA. Translation: AAL47379.1 .
    AK230465 mRNA. Translation: BAF02259.1 .
    AY086696 mRNA. Translation: AAM63750.1 .
    RefSeqi NP_566569.1. NM_112598.3.
    UniGenei At.25332.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1Q4R X-ray 1.90 A 1-109 [» ]
    1Q53 NMR - A/B 1-109 [» ]
    2Q3P X-ray 1.90 A 1-109 [» ]
    ProteinModelPortali Q9LUV2.
    SMRi Q9LUV2. Positions 1-109.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 6313. 1 interaction.
    IntActi Q9LUV2. 1 interaction.

    Proteomic databases

    PaxDbi Q9LUV2.
    PRIDEi Q9LUV2.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT3G17210.1 ; AT3G17210.1 ; AT3G17210 .
    GeneIDi 820980.
    KEGGi ath:AT3G17210.

    Organism-specific databases

    TAIRi AT3G17210.

    Phylogenomic databases

    eggNOGi NOG14742.
    HOGENOMi HOG000245859.
    InParanoidi Q9LUV2.
    OMAi KMIANNA.
    PhylomeDBi Q9LUV2.

    Miscellaneous databases

    EvolutionaryTracei Q9LUV2.

    Gene expression databases

    Genevestigatori Q9LUV2.

    Family and domain databases

    InterProi IPR013097. Dabb.
    IPR011008. Dimeric_a/b-barrel.
    [Graphical view ]
    Pfami PF07876. Dabb. 1 hit.
    [Graphical view ]
    SMARTi SM00886. Dabb. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54909. SSF54909. 1 hit.
    PROSITEi PS51502. S_R_A_B_BARREL. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
      Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.
      DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    4. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
      Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
      , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
      Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    5. "Full-length cDNA from Arabidopsis thaliana."
      Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
      Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    6. Cited for: STRUCTURE BY NMR.
    7. Cited for: X-RAY CRYSTALLOGRAPHY (1.9 ANGSTROMS), SUBUNIT, METAL BINDING.
    8. "Ensemble refinement of protein crystal structures: validation and application."
      Levin E.J., Kondrashov D.A., Wesenberg G.E., Phillips G.N. Jr.
      Structure 15:1040-1052(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) IN COMPLEX WITH MAGNESIUM.

    Entry informationi

    Entry nameiPOP3_ARATH
    AccessioniPrimary (citable) accession number: Q9LUV2
    Secondary accession number(s): Q0WKU8, Q8LCB1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 16, 2004
    Last sequence update: October 1, 2000
    Last modified: October 1, 2014
    This is version 85 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3