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Protein

Leucine-rich repeat extensin-like protein 6

Gene

LRX6

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.By similarity

GO - Molecular functioni

  • structural constituent of cell wall Source: TAIR

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Cell wall biogenesis/degradation

Names & Taxonomyi

Protein namesi
Recommended name:
Leucine-rich repeat extensin-like protein 6
Short name:
AtLRX6
Short name:
LRR/EXTENSIN6
Alternative name(s):
Cell wall hydroxyproline-rich glycoprotein
Gene namesi
Name:LRX6
Ordered Locus Names:At3g22800
ORF Names:MWI23.17
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G22800.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell wall, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2828Sequence analysisAdd
BLAST
Chaini29 – 470442Leucine-rich repeat extensin-like protein 6PRO_0000395466Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi83 – 831N-linked (GlcNAc...)Sequence analysis
Glycosylationi319 – 3191N-linked (GlcNAc...)Sequence analysis

Post-translational modificationi

Hydroxylated on proline residues in the S-P-P-P-P repeat.By similarity
O-glycosylated on hydroxyprolines.By similarity

Keywords - PTMi

Glycoprotein, Hydroxylation

Proteomic databases

PaxDbiQ9LUI1.
PRIDEiQ9LUI1.

Expressioni

Tissue specificityi

Expressed in roots.1 Publication

Developmental stagei

Observed in emerging secondary roots.1 Publication

Gene expression databases

GenevisibleiQ9LUI1. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G22800.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LUI1.
SMRiQ9LUI1. Positions 57-371.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati98 – 12225LRR 1Add
BLAST
Repeati123 – 14624LRR 2Add
BLAST
Repeati147 – 17024LRR 3Add
BLAST
Repeati171 – 19424LRR 4Add
BLAST
Repeati196 – 21722LRR 5Add
BLAST
Repeati219 – 24123LRR 6Add
BLAST
Repeati243 – 26523LRR 7Add
BLAST
Repeati266 – 29025LRR 8Add
BLAST
Repeati291 – 31424LRR 9Add
BLAST
Repeati316 – 33722LRR 10Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni378 – 47093Contains the Ser-Pro(4) repeatsAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi376 – 46792Pro-richAdd
BLAST

Sequence similaritiesi

Contains 10 LRR (leucine-rich) repeats.Curated

Keywords - Domaini

Leucine-rich repeat, Repeat, Signal

Phylogenomic databases

eggNOGiENOG410IMQZ. Eukaryota.
ENOG410Y973. LUCA.
HOGENOMiHOG000239260.
InParanoidiQ9LUI1.
OMAiPPYVYPP.
PhylomeDBiQ9LUI1.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR013210. LRR_N_plant-typ.
[Graphical view]
PfamiPF13855. LRR_8. 1 hit.
PF08263. LRRNT_2. 1 hit.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LUI1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MREDTFFFQW WFLVSGLSFI FLLPQAFTYH TPPINPCFAH PFLPPITNPR
60 70 80 90 100
LLKAFTALQA WKFTITSDPN GFTSNWCGPN VCNYTGVFCA PALDNPYVLT
110 120 130 140 150
VAGIDLNHAN IAGYLPLELG LLTDLALFHI NSNRFQGQLP KTLKCLHLLH
160 170 180 190 200
ELDVSNNKLS GEFPSVIFSL PSLKFLDIRF NEFQGDVPSQ LFDLNLDALF
210 220 230 240 250
INDNKFQFRL PRNIGNSPVS VLVLANNDLQ GSCVPPSFYK MGKTLHEIII
260 270 280 290 300
TNSQLTGCLN REIGLLNQLT VFDVSYNNLV GSLPETIGDM KSLEQLNIAH
310 320 330 340 350
NKFSGYIPES ICRLPRLENF TYSYNFFSGE PPACLRLQEF DDRRNCLPSR
360 370 380 390 400
PMQRSLAECK SFSSYPIDCA SFGCSPPSPP PPPPPPPPPP PPPPPPPPPP
410 420 430 440 450
PPPPPPPYVY PSPPPPPPSP PPYVYPPPPP PYVYPPPPSP PYVYPPPPPS
460 470
PQPYMYPSPP CNDLPTPVHY
Length:470
Mass (Da):52,335
Last modified:October 1, 2000 - v1
Checksum:i5F3B812A60282D39
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB022223 Genomic DNA. Translation: BAB01255.1.
CP002686 Genomic DNA. Translation: AEE76678.1.
BT053757 mRNA. Translation: ACL13984.1.
RefSeqiNP_188919.1. NM_113179.3.
UniGeneiAt.22521.

Genome annotation databases

EnsemblPlantsiAT3G22800.1; AT3G22800.1; AT3G22800.
GeneIDi821851.
GrameneiAT3G22800.1; AT3G22800.1; AT3G22800.
KEGGiath:AT3G22800.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB022223 Genomic DNA. Translation: BAB01255.1.
CP002686 Genomic DNA. Translation: AEE76678.1.
BT053757 mRNA. Translation: ACL13984.1.
RefSeqiNP_188919.1. NM_113179.3.
UniGeneiAt.22521.

3D structure databases

ProteinModelPortaliQ9LUI1.
SMRiQ9LUI1. Positions 57-371.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G22800.1.

Proteomic databases

PaxDbiQ9LUI1.
PRIDEiQ9LUI1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G22800.1; AT3G22800.1; AT3G22800.
GeneIDi821851.
GrameneiAT3G22800.1; AT3G22800.1; AT3G22800.
KEGGiath:AT3G22800.

Organism-specific databases

TAIRiAT3G22800.

Phylogenomic databases

eggNOGiENOG410IMQZ. Eukaryota.
ENOG410Y973. LUCA.
HOGENOMiHOG000239260.
InParanoidiQ9LUI1.
OMAiPPYVYPP.
PhylomeDBiQ9LUI1.

Miscellaneous databases

PROiQ9LUI1.

Gene expression databases

GenevisibleiQ9LUI1. AT.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR013210. LRR_N_plant-typ.
[Graphical view]
PfamiPF13855. LRR_8. 1 hit.
PF08263. LRRNT_2. 1 hit.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
    Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.
    DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Arabidopsis ORF clones."
    de los Reyes C., Quan R., Chen H., Bautista V., Kim C.J., Ecker J.R.
    Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Whole-genome comparison of leucine-rich repeat extensins in Arabidopsis and rice. A conserved family of cell wall proteins form a vegetative and a reproductive clade."
    Baumberger N., Doesseger B., Guyot R., Diet A., Parsons R.L., Clark M.A., Simmons M.P., Bedinger P., Goff S.A., Ringli C., Keller B.
    Plant Physiol. 131:1313-1326(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiLRX6_ARATH
AccessioniPrimary (citable) accession number: Q9LUI1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 13, 2010
Last sequence update: October 1, 2000
Last modified: February 17, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.