Q9LUG5 (RPF2_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Ribosome production factor 2 homolog

Alternative name(s):
Brix domain-containing protein 1 homolog
Ribosome biogenesis protein RPF2 homolog

Gene names

Ordered Locus Names:	At3g23620
ORF Names:	MDB19.11

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	314 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Subcellular location	Nucleus › nucleolus By similarity.
Sequence similarities	Belongs to the RPF2 family. Contains 1 Brix domain.
Sequence caution	The sequence AAM63614.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
Cellular component	Nucleus
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular component	nucleolus Inferred from direct assay. Source: TAIR
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 314	314	Ribosome production factor 2 homolog		PRO_0000120227
Regions
	Domain	28 – 238	211	Brix
Experimental info
	Sequence conflict	133	1	D → Y in AAM63614. Ref.4
	Sequence conflict	222	1	G → S in AAM63614. Ref.4

Sequences

	Sequence		Length	Mass (Da)
	Q9LUG5 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: F7543B58411A109A	FASTA	314	35,728
	10 20 30 40 50 60 MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY 70 80 90 100 110 120 SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP DNLVLGRMYD HQVYDLIEVG 130 140 150 160 170 180 IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL 190 200 210 220 230 240 TGLDRAYVCS AISPTKVFLT HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM 250 260 270 280 290 300 KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH 310 KEETVAKKMK VSSE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones." Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S. DNA Res. 7:131-135(2000) [PubMed: 10819329] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[3]	"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[4]	"Full-length cDNA from Arabidopsis thaliana." Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A. Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AB023036 Genomic DNA. Translation: BAB02781.1. CP002686 Genomic DNA. Translation: AEE76787.1. AY070410 mRNA. Translation: AAL49906.1. AY122939 mRNA. Translation: AAM67472.1. AY086550 mRNA. Translation: AAM63614.1. Different initiation.
IPI	IPI00523872.
RefSeq	NP_566734.1. NM_113266.3.
UniGene	At.28364.
3D structure databases
ProteinModelPortal	Q9LUG5.
ModBase	Search...
Protein-protein interaction databases
STRING	Q9LUG5.
Proteomic databases
PRIDE	Q9LUG5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT3G23620.1; AT3G23620.1; AT3G23620.
GeneID	821942.
GenomeReviews	Gene locus AT3G23620 in contig BA000014_GR.
KEGG	ath:AT3G23620.
NMPDR	fig|3702.1.peg.14617.
Organism-specific databases
TAIR	At3g23620.
Phylogenomic databases
eggNOG	KOG3031.
GeneTree	EPGT00050000018826.
HOGENOM	HBG622739.
InParanoid	Q9LUG5.
OMA	LDMFELG.
PhylomeDB	Q9LUG5.
ProtClustDB	CLSN2688700.
Gene expression databases
ArrayExpress	Q9LUG5.
Genevestigator	Q9LUG5.
GermOnline	AT3G23620. Arabidopsis thaliana.
Family and domain databases
InterPro	IPR007109. Brix. [Graphical view]
KO	K14847.
Pfam	PF04427. Brix. 1 hit. [Graphical view]
SMART	SM00879. Brix. 1 hit. [Graphical view]
PROSITE	PS50833. BRIX. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RPF2_ARATH

Accession

Primary (citable) accession number: Q9LUG5
Secondary accession number(s): Q8LCK0

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 26, 2001
Last sequence update:	October 1, 2000
Last modified:	November 16, 2011
This is version 70 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program