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Protein

Ethylene-responsive transcription factor ERF095

Gene

ERF095

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi13 – 7159AP2/ERFPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • ethylene-activated signaling pathway Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Ethylene signaling pathway, Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor ERF095
Gene namesi
Name:ERF095
Ordered Locus Names:At3g23220
ORF Names:K14B15.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G23220.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 139139Ethylene-responsive transcription factor ERF095PRO_0000290414Add
BLAST

Proteomic databases

PaxDbiQ9LTC6.

Expressioni

Gene expression databases

GenevisibleiQ9LTC6. AT.

Interactioni

Subunit structurei

Interacts with MED25.1 Publication

Protein-protein interaction databases

BioGridi7232. 2 interactions.
STRINGi3702.AT3G23220.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LTC6.
SMRiQ9LTC6. Positions 14-71.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 AP2/ERF DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410JSNM. Eukaryota.
ENOG41108N9. LUCA.
HOGENOMiHOG000237624.
InParanoidiQ9LTC6.
OMAiFPHEYQM.
PhylomeDBiQ9LTC6.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LTC6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MERIESYNTN EMKYRGVRKR PWGKYAAEIR DSARHGARVW LGTFNTAEDA
60 70 80 90 100
ARAYDRAAFG MRGQRAILNF PHEYQMMKDG PNGSHENAVA SSSSGYRGGG
110 120 130
GGDDGREVIE FEYLDDSLLE ELLDYGERSN QDNCNDANR
Length:139
Mass (Da):15,708
Last modified:October 1, 2000 - v1
Checksum:i74860E21C5EA7B2D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY974196 mRNA. Translation: AAX89122.1.
AB025608 Genomic DNA. Translation: BAA95735.1.
CP002686 Genomic DNA. Translation: AEE76736.1.
AY560847 mRNA. Translation: AAT44914.1.
BT028890 mRNA. Translation: ABI49437.1.
RefSeqiNP_188963.2. NM_113223.2.
UniGeneiAt.50677.

Genome annotation databases

EnsemblPlantsiAT3G23220.1; AT3G23220.1; AT3G23220.
GeneIDi821900.
GrameneiAT3G23220.1; AT3G23220.1; AT3G23220.
KEGGiath:AT3G23220.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY974196 mRNA. Translation: AAX89122.1.
AB025608 Genomic DNA. Translation: BAA95735.1.
CP002686 Genomic DNA. Translation: AEE76736.1.
AY560847 mRNA. Translation: AAT44914.1.
BT028890 mRNA. Translation: ABI49437.1.
RefSeqiNP_188963.2. NM_113223.2.
UniGeneiAt.50677.

3D structure databases

ProteinModelPortaliQ9LTC6.
SMRiQ9LTC6. Positions 14-71.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi7232. 2 interactions.
STRINGi3702.AT3G23220.1.

Proteomic databases

PaxDbiQ9LTC6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G23220.1; AT3G23220.1; AT3G23220.
GeneIDi821900.
GrameneiAT3G23220.1; AT3G23220.1; AT3G23220.
KEGGiath:AT3G23220.

Organism-specific databases

TAIRiAT3G23220.

Phylogenomic databases

eggNOGiENOG410JSNM. Eukaryota.
ENOG41108N9. LUCA.
HOGENOMiHOG000237624.
InParanoidiQ9LTC6.
OMAiFPHEYQM.
PhylomeDBiQ9LTC6.

Miscellaneous databases

PROiQ9LTC6.

Gene expression databases

GenevisibleiQ9LTC6. AT.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family."
    Feng J.-X., Liu D., Pan Y., Gong W., Ma L.-G., Luo J.-C., Deng X.-W., Zhu Y.-X.
    Plant Mol. Biol. 59:853-868(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Columbia.
  2. "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
    Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.
    DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Molecular cloning, expression, phylogenetic and functional characterization of the Arabidopsis AP2/EREBP transcription factor family."
    Pan Y., Gong W., Liu D., Fu Q., Mei W.-Q., Song W.-Q., Ma L.-G., Luo J.-C., Deng X.-W., Zhu Y.-X.
    Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 12-139.
  5. "Arabidopsis ORF clones."
    Bautista V.R., Kim C.J., Chen H., Quinitio C., Ecker J.R.
    Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 12-139.
    Strain: cv. Columbia.
  6. "Genome-wide analysis of the ERF gene family in Arabidopsis and rice."
    Nakano T., Suzuki K., Fujimura T., Shinshi H.
    Plant Physiol. 140:411-432(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.
  7. "A high-throughput screening system for Arabidopsis transcription factors and its application to Med25-dependent transcriptional regulation."
    Ou B., Yin K.Q., Liu S.N., Yang Y., Gu T., Wing Hui J.M., Zhang L., Miao J., Kondou Y., Matsui M., Gu H.Y., Qu L.J.
    Mol. Plant 4:546-555(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH MED25.

Entry informationi

Entry nameiERF95_ARATH
AccessioniPrimary (citable) accession number: Q9LTC6
Secondary accession number(s): Q6J9S8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: October 1, 2000
Last modified: February 17, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.