Q9LS24 (Q9LS24_ARATH) Unreviewed, UniProtKB/TrEMBL
Last modified
January 25, 2012.
Version 63.
History...
Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize orderNames and origin
| Protein names | Submitted name: At5g46590 EMBL AAV85660.1 Submitted name: NAC domain containing protein 96 EMBL AED95401.1 Submitted name: NAM-like EMBL BAA97530.1 Submitted name: Putative uncharacterized protein At5g46590 EMBL BAH30616.1 | ||||||
| Gene names |
| ||||||
| Organism | Arabidopsis thaliana (Mouse-ear cress) EMBL BAA97530.1 | ||||||
| Taxonomic identifier | 3702 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis |
Protein attributes
| Sequence length | 292 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at transcript level |
Ontologies
| Keywords | |
|---|---|
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro |
| Molecular function | DNA binding Inferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||
Experimental info | ||||||||
|---|---|---|---|---|---|---|---|---|
| Non-terminal residue | 292 | 1 | EMBL BAH30616.1 | |||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana." Kazusa DNA Research Institute, Cold Spring Harbor and Washington University in St Louis Sequencing Consortium, European Union Arabidopsis Genome Sequencing Consortium Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K. Fransz P.F.Nature 408:823-826(2000) [PubMed: 11130714] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia. |
| [2] | "ORF Cloning and Analysis of Arabidopsis Transcription Factor Genes." Fujita M. Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. |
| [3] | "Arabidopsis ORF clones." Cheuk R., Chen H., Kim C.J., Shinn P., Ecker J.R. Submitted (DEC-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. |
| [4] | "Arabidopsis ORF clones." Kim C.J., Chen H., Cheuk R., Shinn P., Ecker J.R. Submitted (JAN-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. |
| [5] | "Structural analysis of Arabidopsis thaliana chromosome 5. XI." Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H., Tabata S. Submitted (JUN-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. |
| [6] | The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | BT020305 mRNA. Translation: AAV85660.1. BT020555 mRNA. Translation: AAW70401.1. CP002688 Genomic DNA. Translation: AED95401.1. AB028605 Genomic DNA. Translation: BAA97530.1. AB493778 mRNA. Translation: BAH30616.1. |
| IPI | IPI00524352. |
| RefSeq | NP_199471.1. NM_124029.2. |
| UniGene | At.51256. |
3D structure databases | |
| HSSP | HSSP built from PDB template 1UT4 based on UniProtKB Q9C932. |
| ProteinModelPortal | Q9LS24. |
| SMR | Q9LS24. Positions 1-159. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q9LS24. 1 interaction. |
Proteomic databases | |
| PRIDE | Q9LS24. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| EnsemblPlants | AT5G46590.1; AT5G46590.1; AT5G46590. |
| GeneID | 834702. |
| GenomeReviews | Gene locus AT5G46590 in contig BA000015_GR. |
| KEGG | ath:AT5G46590. |
| NMPDR | fig|3702.1.peg.26452. |
Organism-specific databases | |
| TAIR | At5g46590. |
Phylogenomic databases | |
| GeneTree | EPGT00050000000734. |
| HOGENOM | HBG750044. |
| InParanoid | Q9LS24. |
| OMA | DSSNIWI. |
| PhylomeDB | Q9LS24. |
| ProtClustDB | CLSN2686026. |
Gene expression databases | |
| Genevestigator | Q9LS24. |
Family and domain databases | |
| InterPro | IPR003441. NAM. [Graphical view] |
| Pfam | PF02365. NAM. 1 hit. [Graphical view] |
| SUPFAM | SSF101941. NAM. 1 hit. |
| PROSITE | PS51005. NAC. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | Q9LS24_ARATH | ||||||||
| Accession | Primary (citable) accession number: Q9LS24 | ||||||||
| Entry history |
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| Entry status | Unreviewed (UniProtKB/TrEMBL) | ||||||||

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