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Q9LS24 (Q9LS24_ARATH) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
At5g46590 EMBL AAV85660.1
Submitted name:
NAC domain containing protein 96 EMBL AED95401.1
Submitted name:
NAM-like EMBL BAA97530.1
Submitted name:
Putative uncharacterized protein At5g46590 EMBL BAH30616.1
Gene names
Name:NAC096 EMBL AED95401.1
Ordered Locus Names:At5g46590 TAIR At5g46590 EMBL BAH30616.1
ORF Names:AT5G46590 EMBL AED95401.1
OrganismArabidopsis thaliana (Mouse-ear cress) EMBL BAA97530.1
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length292 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological processregulation of transcription, DNA-dependent

Inferred from electronic annotation. Source: InterPro

   Molecular functionDNA binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue2921 EMBL BAH30616.1

Sequences

Sequence LengthMass (Da)Tools
Q9LS24 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: B751FDCEC6F5C3E5

FASTA29233,580
        10         20         30         40         50         60 
MGSSCLPPGF RFHPTDEELI EYYLKRKVEG LEIELEVIPV IDLYSFDPWE LPDKSFLPNR 

        70         80         90        100        110        120 
DMEWYFFCSR DKKYPNGFRT NRGTKAGYWK ATGKDRKITS RSSSIIGYRK TLVFYKGRAP 

       130        140        150        160        170        180 
LGDRSNWIMH EYRLCDDDTS QGSQNLKGAF VLCRVAMKNE IKTNTKIRKI PSEQTIGSGE 

       190        200        210        220        230        240 
SSGLSSRVTS PSRDETMPFH SFANPVSTET DSSNIWISPE FILDSSKDYP QIQDVASQCF 

       250        260        270        280        290 
QQDFDFPIIG NQNMEFPAST SLDQNMDEFM QNGYWTNYGY DQTGLFGYSD FS

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
Kazusa DNA Research Institute, Cold Spring Harbor and Washington University in St Louis Sequencing Consortium, European Union Arabidopsis Genome Sequencing Consortium
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K. expand/collapse author list , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
Nature 408:823-826(2000) [PubMed: 11130714] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]"ORF Cloning and Analysis of Arabidopsis Transcription Factor Genes."
Fujita M.
Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[3]"Arabidopsis ORF clones."
Cheuk R., Chen H., Kim C.J., Shinn P., Ecker J.R.
Submitted (DEC-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[4]"Arabidopsis ORF clones."
Kim C.J., Chen H., Cheuk R., Shinn P., Ecker J.R.
Submitted (JAN-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Structural analysis of Arabidopsis thaliana chromosome 5. XI."
Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H., Tabata S.
Submitted (JUN-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[6]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BT020305 mRNA. Translation: AAV85660.1.
BT020555 mRNA. Translation: AAW70401.1.
CP002688 Genomic DNA. Translation: AED95401.1.
AB028605 Genomic DNA. Translation: BAA97530.1.
AB493778 mRNA. Translation: BAH30616.1.
IPIIPI00524352.
RefSeqNP_199471.1. NM_124029.2.
UniGeneAt.51256.

3D structure databases

HSSPHSSP built from PDB template 1UT4 based on UniProtKB Q9C932.
ProteinModelPortalQ9LS24.
SMRQ9LS24. Positions 1-159.
ModBaseSearch...

Protein-protein interaction databases

IntActQ9LS24. 1 interaction.

Proteomic databases

PRIDEQ9LS24.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT5G46590.1; AT5G46590.1; AT5G46590.
GeneID834702.
GenomeReviewsGene locus AT5G46590 in contig BA000015_GR.
KEGGath:AT5G46590.
NMPDRfig|3702.1.peg.26452.

Organism-specific databases

TAIRAt5g46590.

Phylogenomic databases

GeneTreeEPGT00050000000734.
HOGENOMHBG750044.
InParanoidQ9LS24.
OMADSSNIWI.
PhylomeDBQ9LS24.
ProtClustDBCLSN2686026.

Gene expression databases

GenevestigatorQ9LS24.

Family and domain databases

InterProIPR003441. NAM.
[Graphical view]
PfamPF02365. NAM. 1 hit.
[Graphical view]
SUPFAMSSF101941. NAM. 1 hit.
PROSITEPS51005. NAC. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ9LS24_ARATH
AccessionPrimary (citable) accession number: Q9LS24
Entry history
Integrated into UniProtKB/TrEMBL: October 1, 2000
Last sequence update: October 1, 2000
Last modified: January 25, 2012
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info