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Protein

Allene oxide cyclase 1, chloroplastic

Gene

AOC1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.

Catalytic activityi

(9Z)-(13S)-12,13-epoxyoctadeca-9,11,15-trienoate = (15Z)-12-oxophyto-10,15-dienoate.

GO - Molecular functioni

  • allene-oxide cyclase activity Source: TAIR

GO - Biological processi

  • jasmonic acid biosynthetic process Source: TAIR
Complete GO annotation...

Keywords - Molecular functioni

Isomerase

Keywords - Biological processi

Stress response

Enzyme and pathway databases

BioCyciARA:AT3G25760-MONOMER.
BRENDAi5.3.99.6. 399.

Names & Taxonomyi

Protein namesi
Recommended name:
Allene oxide cyclase 1, chloroplastic (EC:5.3.99.6)
Alternative name(s):
Early-responsive to dehydration 12 protein
Gene namesi
Name:AOC1
Synonyms:ERD12
Ordered Locus Names:At3g25760
ORF Names:K13N2.10, K13N2_8
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

TAIRiAT3G25760.

Subcellular locationi

GO - Cellular componenti

  • chloroplast Source: TAIR
  • chloroplast envelope Source: TAIR
  • chloroplast thylakoid membrane Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 7878ChloroplastSequence analysisAdd
BLAST
Chaini79 – 254176Allene oxide cyclase 1, chloroplasticPRO_0000001702Add
BLAST

Proteomic databases

PaxDbiQ9LS03.
PRIDEiQ9LS03.

Expressioni

Tissue specificityi

Highly expressed in fully developed leaves.1 Publication

Inductioni

By dehydration stress. High local and systemic induction by wounding.1 Publication

Gene expression databases

ExpressionAtlasiQ9LS03. baseline and differential.
GenevisibleiQ9LS03. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G25760.1.

Structurei

Secondary structure

1
254
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi83 – 908Combined sources
Beta strandi114 – 1174Combined sources
Beta strandi120 – 1234Combined sources
Beta strandi129 – 14315Combined sources
Turni144 – 1474Combined sources
Beta strandi148 – 15811Combined sources
Helixi160 – 1623Combined sources
Beta strandi163 – 17210Combined sources
Beta strandi177 – 18610Combined sources
Turni187 – 1904Combined sources
Beta strandi192 – 20110Combined sources
Turni202 – 2043Combined sources
Beta strandi205 – 2139Combined sources
Helixi221 – 2233Combined sources
Helixi238 – 2425Combined sources
Helixi245 – 2473Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1ZVCX-ray1.79A67-254[»]
ProteinModelPortaliQ9LS03.
SMRiQ9LS03. Positions 81-254.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ9LS03.

Family & Domainsi

Sequence similaritiesi

Belongs to the allene oxide cyclase family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiENOG410IHTA. Eukaryota.
ENOG4111X07. LUCA.
HOGENOMiHOG000240167.
InParanoidiQ9LS03.
KOiK10525.
OMAiGNTENPR.
PhylomeDBiQ9LS03.

Family and domain databases

InterProiIPR009410. Allene_ox_cyc.
[Graphical view]
PfamiPF06351. Allene_ox_cyc. 1 hit.
[Graphical view]
ProDomiPD329160. Allene_ox_cyc. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LS03-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSTISLQS ISMTTLNNLS YSKQFHRSSL LGFSKSFQNF GISSNGPGSS
60 70 80 90 100
SPTSFTPKKK LTPTRALSQN LGNTENPRPS KVQELSVYEI NDLDRHSPKI
110 120 130 140 150
LKNAFSFRFG LGDLVPFTNK LYTGDLKKRV GITAGLCVVI EHVPEKNGDR
160 170 180 190 200
FEATYSFYFG DYGHLSVQGP YLTYEDSFLA ITGGAGIFEG AYGQVKLQQL
210 220 230 240 250
VYPTKLFYTF YLKGLANDLP LELIGTPVPP SKDVEPAPEA KALKPSGVVS

NFTN
Length:254
Mass (Da):27,802
Last modified:October 1, 2000 - v1
Checksum:i7CBBDCCD10EFE410
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ308483 mRNA. Translation: CAC83761.1.
AB028607 Genomic DNA. Translation: BAA95763.1.
CP002686 Genomic DNA. Translation: AEE77065.1.
AK175392 mRNA. Translation: BAD43155.1.
AK176777 mRNA. Translation: BAD44540.1.
AB039931 mRNA. Translation: BAB63918.1.
RefSeqiNP_189204.1. NM_113475.4.
UniGeneiAt.26518.

Genome annotation databases

EnsemblPlantsiAT3G25760.1; AT3G25760.1; AT3G25760.
GeneIDi822167.
GrameneiAT3G25760.1; AT3G25760.1; AT3G25760.
KEGGiath:AT3G25760.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ308483 mRNA. Translation: CAC83761.1.
AB028607 Genomic DNA. Translation: BAA95763.1.
CP002686 Genomic DNA. Translation: AEE77065.1.
AK175392 mRNA. Translation: BAD43155.1.
AK176777 mRNA. Translation: BAD44540.1.
AB039931 mRNA. Translation: BAB63918.1.
RefSeqiNP_189204.1. NM_113475.4.
UniGeneiAt.26518.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1ZVCX-ray1.79A67-254[»]
ProteinModelPortaliQ9LS03.
SMRiQ9LS03. Positions 81-254.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G25760.1.

Proteomic databases

PaxDbiQ9LS03.
PRIDEiQ9LS03.

Protocols and materials databases

DNASUi822167.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G25760.1; AT3G25760.1; AT3G25760.
GeneIDi822167.
GrameneiAT3G25760.1; AT3G25760.1; AT3G25760.
KEGGiath:AT3G25760.

Organism-specific databases

TAIRiAT3G25760.

Phylogenomic databases

eggNOGiENOG410IHTA. Eukaryota.
ENOG4111X07. LUCA.
HOGENOMiHOG000240167.
InParanoidiQ9LS03.
KOiK10525.
OMAiGNTENPR.
PhylomeDBiQ9LS03.

Enzyme and pathway databases

BioCyciARA:AT3G25760-MONOMER.
BRENDAi5.3.99.6. 399.

Miscellaneous databases

EvolutionaryTraceiQ9LS03.
PROiQ9LS03.

Gene expression databases

ExpressionAtlasiQ9LS03. baseline and differential.
GenevisibleiQ9LS03. AT.

Family and domain databases

InterProiIPR009410. Allene_ox_cyc.
[Graphical view]
PfamiPF06351. Allene_ox_cyc. 1 hit.
[Graphical view]
ProDomiPD329160. Allene_ox_cyc. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Jasmonate biosynthesis and the allene oxide cyclase family of Arabidopsis thaliana."
    Stenzel I., Hause B., Miersch O., Kurz T., Maucher H., Weichart H., Ziegler J., Feussner I., Wasternack C.
    Plant Mol. Biol. 51:895-911(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, SUBCELLULAR LOCATION, INDUCTION.
    Strain: cv. Columbia.
    Tissue: Leaf.
  2. "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones."
    Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.
    DNA Res. 7:131-135(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
    , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Cloning of cDNAs for genes that are early-responsive to dehydration stress (ERDs) in Arabidopsis thaliana L.: identification of three ERDs as HSP cognate genes."
    Kiyosue T., Yamaguchi-shinozaki K., Shinozaki K.
    Plant Mol. Biol. 25:791-798(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 3-254.
  6. "X-ray structure of allene oxide cyclase from Arabidopsis thaliana gene At3g25760."
    Wesenberg G.E., Phillips G.N. Jr., Han B.W., Bitto E., Bingman C.A., Allard S.T.M.
    Submitted (JUN-2005) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.79 ANGSTROMS) OF 67-254.

Entry informationi

Entry nameiAOC1_ARATH
AccessioniPrimary (citable) accession number: Q9LS03
Secondary accession number(s): Q94IH9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: October 1, 2000
Last modified: February 17, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Miscellaneous

The four allene oxide cyclase proteins (AOC1, AOC2, AOC3 and AOC4) are encoded by duplicated genes. They are very similar, and most experiments involving antibodies do not discriminate between the different members.

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.