Probable pectate lyase 9 precursor - Arabidopsis thaliana (Mouse-ear cress)

Contribute

Read comments (?) or add your own

Q9LRM5 (PLY9_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 75. History...

Clusters with 100%, 90%, 50% identity |

Documents (3) |

Third-party data

text xml rdf/xml gff fasta

to top of page

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

to top of page

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
Probable pectate lyase 9
EC=4.2.2.2

Gene names

Ordered Locus Names:	At3g24230
ORF Names:	MUJ8.14

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	452 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at transcript level

General annotation (Comments)

Catalytic activity	Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends.
Cofactor	Binds 1 calcium ion. Required for its activity By similarity.
Pathway	Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 2/5.
Sequence similarities	Belongs to the polysaccharide lyase 1 family.

Ontologies

Keywords
Domain	Signal
Ligand	Calcium Metal-binding
Molecular function	Lyase
PTM	Glycoprotein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular function	metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW pectate lyase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Signal peptide

25

Potential

Chain

427

Probable pectate lyase 9

PRO_0000024873

Sites

Active site

1

Potential

Metal binding

1

Calcium By similarity

Metal binding

1

Calcium By similarity

Metal binding

1

Calcium By similarity

Amino acid modifications

Glycosylation

1

N-linked (GlcNAc...) Potential

Glycosylation

1

N-linked (GlcNAc...) Potential

Glycosylation

1

N-linked (GlcNAc...) Potential

Glycosylation

1

N-linked (GlcNAc...) Potential

Glycosylation

1

N-linked (GlcNAc...) Potential

Glycosylation

1

N-linked (GlcNAc...) Potential

Glycosylation

1

N-linked (GlcNAc...) Potential

Glycosylation

1

N-linked (GlcNAc...) Potential

Experimental info

Sequence conflict

1

H → N in BX823056. Ref.3

Sequence conflict

1

D → H in BX823056. Ref.3

Sequence conflict

1

G → A in BX823056. Ref.3

Sequence conflict

1

Y → H in BX823056. Ref.3

Sequence conflict

1

Y → H in BX823056. Ref.3

Sequence conflict

1

F → S in BX823056. Ref.3

Sequence conflict

1

D → H in BX823056. Ref.3

Sequences

Sequence

Length

Mass (Da)

Tools

Q9LRM5 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: F31AD9097F923249
Show »

452

49,985

        10         20         30         40         50         60 
MATSSLKLTS ACFVLLFIFV GCVLTATNLR NNEISRSRKL KTEDSKSFNS SPMTTRLDGV 

        70         80         90        100        110        120 
VELNEHAVTD PDKVAHEVSN LIHMSEQNIT ARRKLGFFSC GNGNLIDDCW RCDRNWNKNR 

       130        140        150        160        170        180 
KHLADCGMGF GSKAFGGRNG SYYVVTDHSD DDVVNPKPGT LRHAVIQVEP LWIIFKRDMV 

       190        200        210        220        230        240 
IKLKQELIMN SFKTIDARGA NVHIANGACI TIQNITNVIV HGLHIHDCKR TGNVTVRSSP 

       250        260        270        280        290        300 
SQAGFRGTAD GDAINIFGSS HIWIDHNSLS NCTDGLVDVV NGSTAITISN NHFTHHDEVM 

       310        320        330        340        350        360 
LLGHNDSYTR DKMMQVTVAY NHFGEGLIQR MPRCRHGYFH VVNNDYTHWK MYAIGGSANP 

       370        380        390        400        410        420 
TINSQGNRFA APKNHSAKEV TKRLDTKGNE WMEWNWRSEK DLLVNGAFFT PSGEGASGDS 

       430        440        450 
QTLSLPAKPA SMVDAITASA GALSCRRGKP CY

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones." Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S. DNA Res. 7:131-135(2000) [PubMed: 10819329] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[3]	"Whole genome sequence comparisons and 'full-length' cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation." Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M., Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M., Weissenbach J., Salanoubat M. Genome Res. 14:406-413(2004) [PubMed: 14993207] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AB028621 Genomic DNA. Translation: BAB01365.1. CP002686 Genomic DNA. Translation: AEE76877.1. BX823056 mRNA. No translation available.
IPI	IPI00540717.
RefSeq	NP_189065.2. NM_113328.2.
UniGene	At.50221.
3D structure databases
ProteinModelPortal	Q9LRM5.
SMR	Q9LRM5. Positions 103-444.
ModBase	Search...
Protein family/group databases
CAZy	PL1. Polysaccharide Lyase Family 1.
Proteomic databases
PRIDE	Q9LRM5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT3G24230.1; AT3G24230.1; AT3G24230.
GeneID	822010.
GenomeReviews	Gene locus AT3G24230 in contig BA000014_GR.
KEGG	ath:AT3G24230.
NMPDR	fig\|3702.1.peg.14684.
Organism-specific databases
TAIR	At3g24230.
Phylogenomic databases
eggNOG	COG3866.
GeneTree	EPGT00050000008990.
HOGENOM	HBG317381.
InParanoid	Q9LRM5.
OMA	GDAINIF.
PhylomeDB	Q9LRM5.
ProtClustDB	CLSN2918543.
Gene expression databases
ArrayExpress	Q9LRM5.
Genevestigator	Q9LRM5.
GermOnline	AT3G24230. Arabidopsis thaliana.
Family and domain databases
InterPro	IPR002022. Amb_allergen. IPR018082. AmbAllergen. IPR006626. PbH1. IPR012334. Pectin_lyas_fold. IPR011050. Pectin_lyase_fold/virulence. [Graphical view]
Gene3D	G3DSA:2.160.20.10. Pectin_lyas_fold. 1 hit.
KO	K01728.
Pfam	PF00544. Pec_lyase_C. 1 hit. [Graphical view]
PRINTS	PR00807. AMBALLERGEN.
SMART	SM00656. Amb_all. 1 hit. SM00710. PbH1. 2 hits. [Graphical view]
SUPFAM	SSF51126. Pectin_lyas_like. 1 hit.
ProtoNet	Search...

Entry information

Entry name

PLY9_ARATH

Accession

Primary (citable) accession number: Q9LRM5

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 16, 2003
Last sequence update:	October 1, 2000
Last modified:	December 14, 2011
This is version 75 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

to top of page

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents