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Protein

Pentatricopeptide repeat-containing protein At1g03540

Gene

PCMP-E4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g03540
Gene namesi
Name:PCMP-E4
Ordered Locus Names:At1g03540
ORF Names:F21B7.16
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G03540
TAIRilocus:2020703 AT1G03540

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003427491 – 609Pentatricopeptide repeat-containing protein At1g03540Add BLAST609

Proteomic databases

PaxDbiQ9LR69
PRIDEiQ9LR69

Expressioni

Gene expression databases

ExpressionAtlasiQ9LR69 baseline and differential
GenevisibleiQ9LR69 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G03540.1

Structurei

3D structure databases

ProteinModelPortaliQ9LR69
SMRiQ9LR69
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati25 – 59PPR 1Add BLAST35
Repeati60 – 94PPR 2Add BLAST35
Repeati95 – 126PPR 3Add BLAST32
Repeati127 – 161PPR 4Add BLAST35
Repeati162 – 196PPR 5Add BLAST35
Repeati197 – 227PPR 6Add BLAST31
Repeati228 – 263PPR 7Add BLAST36
Repeati264 – 298PPR 8Add BLAST35
Repeati299 – 329PPR 9Add BLAST31
Repeati330 – 364PPR 10Add BLAST35
Repeati396 – 426PPR 11Add BLAST31
Repeati427 – 461PPR 12Add BLAST35
Repeati462 – 497PPR 13Add BLAST36
Repeati498 – 532PPR 14Add BLAST35

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni533 – 609Type E motifAdd BLAST77

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000241954
InParanoidiQ9LR69
OMAiWNHVISS
OrthoDBiEOG093602N6
PhylomeDBiQ9LR69

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 4 hits
PF13041 PPR_2, 3 hits
SUPFAMiSSF48452 SSF48452, 1 hit
TIGRFAMsiTIGR00756 PPR, 6 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 14 hits

Sequencei

Sequence statusi: Complete.

Q9LR69-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNLIILKRHF SQHASLCLTP SISSSAPTKQ SRILELCKLG QLTEAIRILN
60 70 80 90 100
STHSSEIPAT PKLYASLLQT CNKVFSFIHG IQFHAHVVKS GLETDRNVGN
110 120 130 140 150
SLLSLYFKLG PGMRETRRVF DGRFVKDAIS WTSMMSGYVT GKEHVKALEV
160 170 180 190 200
FVEMVSFGLD ANEFTLSSAV KACSELGEVR LGRCFHGVVI THGFEWNHFI
210 220 230 240 250
SSTLAYLYGV NREPVDARRV FDEMPEPDVI CWTAVLSAFS KNDLYEEALG
260 270 280 290 300
LFYAMHRGKG LVPDGSTFGT VLTACGNLRR LKQGKEIHGK LITNGIGSNV
310 320 330 340 350
VVESSLLDMY GKCGSVREAR QVFNGMSKKN SVSWSALLGG YCQNGEHEKA
360 370 380 390 400
IEIFREMEEK DLYCFGTVLK ACAGLAAVRL GKEIHGQYVR RGCFGNVIVE
410 420 430 440 450
SALIDLYGKS GCIDSASRVY SKMSIRNMIT WNAMLSALAQ NGRGEEAVSF
460 470 480 490 500
FNDMVKKGIK PDYISFIAIL TACGHTGMVD EGRNYFVLMA KSYGIKPGTE
510 520 530 540 550
HYSCMIDLLG RAGLFEEAEN LLERAECRND ASLWGVLLGP CAANADASRV
560 570 580 590 600
AERIAKRMME LEPKYHMSYV LLSNMYKAIG RHGDALNIRK LMVRRGVAKT

VGQSWIDAH
Length:609
Mass (Da):67,402
Last modified:October 1, 2000 - v1
Checksum:i3B04DC4A544ECA92
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002560 Genomic DNA Translation: AAF86514.1
CP002684 Genomic DNA Translation: AEE27584.1
DQ446225 mRNA Translation: ABE65596.1
PIRiT00904
RefSeqiNP_171853.1, NM_100236.2
UniGeneiAt.51470

Genome annotation databases

EnsemblPlantsiAT1G03540.1; AT1G03540.1; AT1G03540
GeneIDi839466
GrameneiAT1G03540.1; AT1G03540.1; AT1G03540
KEGGiath:AT1G03540

Similar proteinsi

Entry informationi

Entry nameiPPR8_ARATH
AccessioniPrimary (citable) accession number: Q9LR69
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: October 1, 2000
Last modified: April 25, 2018
This is version 92 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

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