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Protein

Pentatricopeptide repeat-containing protein At1g03540

Gene

PCMP-E4

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g03540
Gene namesi
Name:PCMP-E4
Ordered Locus Names:At1g03540
ORF Names:F21B7.16
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G03540.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003427491 – 609Pentatricopeptide repeat-containing protein At1g03540Add BLAST609

Proteomic databases

PaxDbiQ9LR69.
PRIDEiQ9LR69.

Expressioni

Gene expression databases

GenevisibleiQ9LR69. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G03540.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LR69.
SMRiQ9LR69.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati25 – 59PPR 1Add BLAST35
Repeati60 – 94PPR 2Add BLAST35
Repeati95 – 126PPR 3Add BLAST32
Repeati127 – 161PPR 4Add BLAST35
Repeati162 – 196PPR 5Add BLAST35
Repeati197 – 227PPR 6Add BLAST31
Repeati228 – 263PPR 7Add BLAST36
Repeati264 – 298PPR 8Add BLAST35
Repeati299 – 329PPR 9Add BLAST31
Repeati330 – 364PPR 10Add BLAST35
Repeati396 – 426PPR 11Add BLAST31
Repeati427 – 461PPR 12Add BLAST35
Repeati462 – 497PPR 13Add BLAST36
Repeati498 – 532PPR 14Add BLAST35

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni533 – 609Type E motifAdd BLAST77

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated
Contains 14 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000241954.
InParanoidiQ9LR69.
OMAiVDMYGHA.
OrthoDBiEOG093602N6.
PhylomeDBiQ9LR69.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 4 hits.
PF13041. PPR_2. 3 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 1 hit.
TIGRFAMsiTIGR00756. PPR. 6 hits.
PROSITEiPS51375. PPR. 14 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LR69-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNLIILKRHF SQHASLCLTP SISSSAPTKQ SRILELCKLG QLTEAIRILN
60 70 80 90 100
STHSSEIPAT PKLYASLLQT CNKVFSFIHG IQFHAHVVKS GLETDRNVGN
110 120 130 140 150
SLLSLYFKLG PGMRETRRVF DGRFVKDAIS WTSMMSGYVT GKEHVKALEV
160 170 180 190 200
FVEMVSFGLD ANEFTLSSAV KACSELGEVR LGRCFHGVVI THGFEWNHFI
210 220 230 240 250
SSTLAYLYGV NREPVDARRV FDEMPEPDVI CWTAVLSAFS KNDLYEEALG
260 270 280 290 300
LFYAMHRGKG LVPDGSTFGT VLTACGNLRR LKQGKEIHGK LITNGIGSNV
310 320 330 340 350
VVESSLLDMY GKCGSVREAR QVFNGMSKKN SVSWSALLGG YCQNGEHEKA
360 370 380 390 400
IEIFREMEEK DLYCFGTVLK ACAGLAAVRL GKEIHGQYVR RGCFGNVIVE
410 420 430 440 450
SALIDLYGKS GCIDSASRVY SKMSIRNMIT WNAMLSALAQ NGRGEEAVSF
460 470 480 490 500
FNDMVKKGIK PDYISFIAIL TACGHTGMVD EGRNYFVLMA KSYGIKPGTE
510 520 530 540 550
HYSCMIDLLG RAGLFEEAEN LLERAECRND ASLWGVLLGP CAANADASRV
560 570 580 590 600
AERIAKRMME LEPKYHMSYV LLSNMYKAIG RHGDALNIRK LMVRRGVAKT

VGQSWIDAH
Length:609
Mass (Da):67,402
Last modified:October 1, 2000 - v1
Checksum:i3B04DC4A544ECA92
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002560 Genomic DNA. Translation: AAF86514.1.
CP002684 Genomic DNA. Translation: AEE27584.1.
DQ446225 mRNA. Translation: ABE65596.1.
PIRiT00904.
RefSeqiNP_171853.1. NM_100236.2.
UniGeneiAt.51470.

Genome annotation databases

EnsemblPlantsiAT1G03540.1; AT1G03540.1; AT1G03540.
GeneIDi839466.
GrameneiAT1G03540.1; AT1G03540.1; AT1G03540.
KEGGiath:AT1G03540.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002560 Genomic DNA. Translation: AAF86514.1.
CP002684 Genomic DNA. Translation: AEE27584.1.
DQ446225 mRNA. Translation: ABE65596.1.
PIRiT00904.
RefSeqiNP_171853.1. NM_100236.2.
UniGeneiAt.51470.

3D structure databases

ProteinModelPortaliQ9LR69.
SMRiQ9LR69.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G03540.1.

Proteomic databases

PaxDbiQ9LR69.
PRIDEiQ9LR69.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G03540.1; AT1G03540.1; AT1G03540.
GeneIDi839466.
GrameneiAT1G03540.1; AT1G03540.1; AT1G03540.
KEGGiath:AT1G03540.

Organism-specific databases

TAIRiAT1G03540.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000241954.
InParanoidiQ9LR69.
OMAiVDMYGHA.
OrthoDBiEOG093602N6.
PhylomeDBiQ9LR69.

Miscellaneous databases

PROiQ9LR69.

Gene expression databases

GenevisibleiQ9LR69. AT.

Family and domain databases

Gene3Di1.25.40.10. 3 hits.
InterProiIPR002885. Pentatricopeptide_repeat.
IPR011990. TPR-like_helical_dom.
[Graphical view]
PfamiPF01535. PPR. 4 hits.
PF13041. PPR_2. 3 hits.
[Graphical view]
SUPFAMiSSF48452. SSF48452. 1 hit.
TIGRFAMsiTIGR00756. PPR. 6 hits.
PROSITEiPS51375. PPR. 14 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPPR8_ARATH
AccessioniPrimary (citable) accession number: Q9LR69
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: October 1, 2000
Last modified: November 30, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.