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Q9LQ95

- Y1164_ARATH

UniProt

Q9LQ95 - Y1164_ARATH

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Protein

BTB/POZ domain-containing protein At1g01640

Gene

At1g01640

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Pathwayi

GO - Biological processi

  1. protein ubiquitination Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Biological processi

Ubl conjugation pathway

Enzyme and pathway databases

UniPathwayiUPA00143.

Names & Taxonomyi

Protein namesi
Recommended name:
BTB/POZ domain-containing protein At1g01640
Gene namesi
Ordered Locus Names:At1g01640
ORF Names:T1N6.2
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 1

Organism-specific databases

TAIRiAT1G01640.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 207207BTB/POZ domain-containing protein At1g01640PRO_0000405996Add
BLAST

Proteomic databases

PaxDbiQ9LQ95.
PRIDEiQ9LQ95.

Expressioni

Gene expression databases

GenevestigatoriQ9LQ95.

Interactioni

Subunit structurei

Interacts with CUL3A.1 Publication

Protein-protein interaction databases

BioGridi24769. 3 interactions.
IntActiQ9LQ95. 3 interactions.
STRINGi3702.AT1G01640.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ9LQ95.
SMRiQ9LQ95. Positions 11-182.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini24 – 9471BTBPROSITE-ProRule annotationAdd
BLAST

Domaini

The BTB/POZ-like domain may mediate the interaction with some component of ubiquitin ligase complexes.1 Publication

Sequence similaritiesi

Contains 1 BTB (POZ) domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiNOG321590.
HOGENOMiHOG000029690.
InParanoidiQ9LQ95.
KOiK10523.
OMAiAINHIVK.
PhylomeDBiQ9LQ95.

Family and domain databases

Gene3Di3.30.710.10. 1 hit.
InterProiIPR000210. BTB/POZ-like.
IPR011333. BTB/POZ_fold.
IPR013069. BTB_POZ.
[Graphical view]
PfamiPF00651. BTB. 1 hit.
[Graphical view]
SMARTiSM00225. BTB. 1 hit.
[Graphical view]
SUPFAMiSSF54695. SSF54695. 1 hit.
PROSITEiPS50097. BTB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LQ95-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTEAEQKAAF LGGLVVSFKE QMHTDVLVKP GEEAPPIPTH KAVLAARSKV
60 70 80 90 100
FRNMLDSDEC KTSPEESITL PDLSHDELKS LLEFLYSGNL KAPYNQYRSL
110 120 130 140 150
YLAADKYDIS YLQDVCRNHF IASLSSRNVL DILELASIPC DTILKDAAIN
160 170 180 190 200
HIVKHMEEVV VPMKYETFVQ RNPDLSVEIT RAYLRETKAK AKDHGAPLNG

NTRPRIW
Length:207
Mass (Da):23,372
Last modified:October 1, 2000 - v1
Checksum:iA108E941AE9221F0
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti79 – 791K → R in AAQ22660. (PubMed:14593172)Curated
Sequence conflicti79 – 791K → R in BAF01519. 1 PublicationCurated

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC009273 Genomic DNA. Translation: AAF78396.1.
CP002684 Genomic DNA. Translation: AEE27315.1.
CP002684 Genomic DNA. Translation: AEE27316.1.
BT010191 mRNA. Translation: AAQ22660.1.
AK229678 mRNA. Translation: BAF01519.1.
PIRiC86147.
RefSeqiNP_171670.1. NM_100046.3.
NP_849574.1. NM_179243.3.
UniGeneiAt.14892.

Genome annotation databases

EnsemblPlantsiAT1G01640.1; AT1G01640.1; AT1G01640.
AT1G01640.2; AT1G01640.2; AT1G01640.
GeneIDi839534.
KEGGiath:AT1G01640.

Cross-referencesi

Web resourcesi

PlantsUBQ

A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC009273 Genomic DNA. Translation: AAF78396.1 .
CP002684 Genomic DNA. Translation: AEE27315.1 .
CP002684 Genomic DNA. Translation: AEE27316.1 .
BT010191 mRNA. Translation: AAQ22660.1 .
AK229678 mRNA. Translation: BAF01519.1 .
PIRi C86147.
RefSeqi NP_171670.1. NM_100046.3.
NP_849574.1. NM_179243.3.
UniGenei At.14892.

3D structure databases

ProteinModelPortali Q9LQ95.
SMRi Q9LQ95. Positions 11-182.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 24769. 3 interactions.
IntActi Q9LQ95. 3 interactions.
STRINGi 3702.AT1G01640.1-P.

Proteomic databases

PaxDbi Q9LQ95.
PRIDEi Q9LQ95.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT1G01640.1 ; AT1G01640.1 ; AT1G01640 .
AT1G01640.2 ; AT1G01640.2 ; AT1G01640 .
GeneIDi 839534.
KEGGi ath:AT1G01640.

Organism-specific databases

TAIRi AT1G01640.

Phylogenomic databases

eggNOGi NOG321590.
HOGENOMi HOG000029690.
InParanoidi Q9LQ95.
KOi K10523.
OMAi AINHIVK.
PhylomeDBi Q9LQ95.

Enzyme and pathway databases

UniPathwayi UPA00143 .

Gene expression databases

Genevestigatori Q9LQ95.

Family and domain databases

Gene3Di 3.30.710.10. 1 hit.
InterProi IPR000210. BTB/POZ-like.
IPR011333. BTB/POZ_fold.
IPR013069. BTB_POZ.
[Graphical view ]
Pfami PF00651. BTB. 1 hit.
[Graphical view ]
SMARTi SM00225. BTB. 1 hit.
[Graphical view ]
SUPFAMi SSF54695. SSF54695. 1 hit.
PROSITEi PS50097. BTB. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
    Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K.
    , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
    Nature 408:816-820(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs."
    Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.
    , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.
    Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Cullins 3a and 3b assemble with members of the broad complex/tramtrack/bric-a-brac (BTB) protein family to form essential ubiquitin-protein ligases (E3s) in Arabidopsis."
    Gingerich D.J., Gagne J.M., Salter D.W., Hellmann H., Estelle M., Ma L., Vierstra R.D.
    J. Biol. Chem. 280:18810-18821(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: DOMAIN BTB.
  6. "Arabidopsis has two redundant Cullin3 proteins that are essential for embryo development and that interact with RBX1 and BTB proteins to form multisubunit E3 ubiquitin ligase complexes in vivo."
    Figueroa P., Gusmaroli G., Serino G., Habashi J., Ma L., Shen Y., Feng S., Bostick M., Callis J., Hellmann H., Deng X.W.
    Plant Cell 17:1180-1195(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH CUL3A.

Entry informationi

Entry nameiY1164_ARATH
AccessioniPrimary (citable) accession number: Q9LQ95
Secondary accession number(s): Q7XA69
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 8, 2011
Last sequence update: October 1, 2000
Last modified: October 29, 2014
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3