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Q9LQ73 (PX11C_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified December 14, 2011. Version 61. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Peroxisomal membrane protein 11C
Alternative name(s):
Peroxin-11C
Short name=AtPEX11c
Gene names
Name:PEX11C
Synonyms:PEX11-1
Ordered Locus Names:At1g01820
ORF Names:T1N6.24
OrganismArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length235 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission. Ref.7 Ref.8

Subunit structure

Homooligomer. Interacts with ARC5 and FIS1B on peroxisomes. Ref.9

Subcellular location

Peroxisome membrane; Multi-pass membrane protein Ref.8 Ref.9.

Tissue specificity

Expressed in roots and developing siliques. Ref.7 Ref.8

Induction

Up-regulated during senescence. Ref.8

Miscellaneous

Can complement the yeast pex11 null mutant.

Sequence similarities

Belongs to the peroxin-11 family.

Ontologies

Keywords
   Biological processPeroxisome biogenesis
   Cellular componentMembrane
Peroxisome
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological processperoxisome fission

Inferred from mutant phenotype Ref.8. Source: TAIR

   Cellular componentintegral to peroxisomal membrane

Inferred from direct assay Ref.8. Source: TAIR

plasmodesma

Inferred from direct assay. Source: TAIR

   Molecular functionidentical protein binding

Inferred from direct assay Ref.9. Source: UniProtKB

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 235235Peroxisomal membrane protein 11C
PRO_0000330297

Regions

Topological domain1 – 9191Cytoplasmic Ref.7
Transmembrane92 – 10817Helical; Potential
Topological domain109 – 20698Lumenal Ref.7
Transmembrane207 – 22620Helical; Potential
Topological domain227 – 2359Cytoplasmic Ref.7

Experimental info

Sequence conflict1241R → L in CAD58675. Ref.2

Sequences

Sequence LengthMass (Da)Tools
Q9LQ73 [UniParc].

Last modified October 1, 2000. Version 1.
Checksum: 8DE9422A23181A49

FASTA23525,912
        10         20         30         40         50         60 
MSTLETTRAE LGLVVVYLNK AEARDKICRA IQYGSKFLSD GQPGTAQNVD KNTSLARKVF 

        70         80         90        100        110        120 
RLFKFVNDLH ALISPVPKGT PLPLVLLGKS KNALLSTFLF LDQIVWLGRT GIYKDKERAE 

       130        140        150        160        170        180 
ILGRISLFCW MGSSVCTSLV EVGELGRLSA SIKKLEKEIG NKDKHQNEQY RAKVEKSNER 

       190        200        210        220        230 
SLALIKAGMD VVVAFGLLQL APKKVTPRVT GAFGFASSLI SCYQLLPSHP KSKMV

« Hide

References

« Hide 'large scale' references
[1]"Pex 11 homologue."
Yamaguchi K., Nishimura M.
Submitted (JAN-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Strain: cv. Columbia.
[2]"AtPEX11 and peroxisome proliferation in Arabidopsis thaliana."
El Shami M., Baker A.
Submitted (DEC-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Tissue: Seedling.
[3]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed: 11130712] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[4]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[5]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed: 14593172] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[6]"Full-length cDNA from Arabidopsis thaliana."
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
[7]"Five Arabidopsis peroxin 11 homologs individually promote peroxisome elongation, duplication or aggregation."
Lingard M.J., Trelease R.N.
J. Cell Sci. 119:1961-1972(2006) [PubMed: 16636080] [Abstract]
Cited for: FUNCTION, TOPOLOGY, TISSUE SPECIFICITY, NOMENCLATURE.
[8]"The PEROXIN11 protein family controls peroxisome proliferation in Arabidopsis."
Orth T., Reumann S., Zhang X., Fan J., Wenzel D., Quan S., Hu J.
Plant Cell 19:333-350(2007) [PubMed: 17220199] [Abstract]
Cited for: FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, INDUCTION, GENE FAMILY.
[9]"The Arabidopsis chloroplast division protein DYNAMIN-RELATED PROTEIN5B also mediates peroxisome division."
Zhang X., Hu J.
Plant Cell 22:431-442(2010) [PubMed: 20179140] [Abstract]
Cited for: INTERACTION WITH ARC5 AND FIS1B, SUBCELLULAR LOCATION, SELF-INTERACTION.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AB022861 mRNA. Translation: BAD83578.1.
AJ520104 mRNA. Translation: CAD58675.1.
AC009273 Genomic DNA. Translation: AAF78415.1.
CP002684 Genomic DNA. Translation: AEE27339.1.
AF332441 mRNA. Translation: AAG48804.1.
AY064139 mRNA. Translation: AAL36046.1.
AY097406 mRNA. Translation: AAM19922.1.
AY086844 mRNA. Translation: AAM63892.1.
IPIIPI00532575.
PIRA86150.
RefSeqNP_563636.1. NM_100065.4.
UniGeneAt.24237.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ9LQ73.

Proteomic databases

PRIDEQ9LQ73.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT1G01820.1; AT1G01820.1; AT1G01820.
GeneID839257.
GenomeReviewsGene locus AT1G01820 in contig CT485782_GR.
KEGGath:AT1G01820.
NMPDRfig|3702.1.peg.294.

Organism-specific databases

TAIRAt1g01820.

Phylogenomic databases

eggNOGKOG4186.
GeneTreeEPGT00050000012514.
HOGENOMHBG318175.
InParanoidQ9LQ73.
OMAYQLLPSH.
PhylomeDBQ9LQ73.
ProtClustDBCLSN2687613.

Gene expression databases

ArrayExpressQ9LQ73.
GenevestigatorQ9LQ73.

Family and domain databases

InterProIPR008733. PEX11.
[Graphical view]
PANTHERPTHR12652. PEX11. 1 hit.
ProtoNetSearch...

Entry information

Entry namePX11C_ARATH
AccessionPrimary (citable) accession number: Q9LQ73
Secondary accession number(s): Q5QT12
Entry history
Integrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: October 1, 2000
Last modified: December 14, 2011
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents