Reviewed, UniProtKB/Swiss-Prot Q9LPC4 (PPR1_ARATH)

Names and origin

Protein names

Recommended name:
    Pentatricopeptide repeat-containing protein At1g01970

Gene names

Ordered Locus Names:	At1g01970
ORF Names:	F22M8.10

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	409 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Sequence similarities

Belongs to the PPR family. P subfamily. Contains 6 PPR (pentatricopeptide) repeats.

Ontologies

Keywords
Domain	Repeat
Technical term	Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 409	409	Pentatricopeptide repeat-containing protein At1g01970		PRO_0000342742
Regions
	Repeat	164 – 198	35	PPR 1
	Repeat	199 – 233	35	PPR 2
	Repeat	234 – 268	35	PPR 3
	Repeat	269 – 303	35	PPR 4
	Repeat	304 – 338	35	PPR 5
	Repeat	339 – 373	35	PPR 6

Sequences

	Sequence		Length	Mass (Da)
	Q9LPC4-1 [UniParc]. Last modified October 1, 2000. Version 1. Checksum: F1DB0AE525D15ED2	FASTA	409	46,077
	10 20 30 40 50 60 MGIYSCSAVL SFGLKCPLVI ARHRLYHRMF RRNPLLVESH LNRLCSCKCN ASLAIGEVVE 70 80 90 100 110 120 KEDAEQSRSF NWADVGLNLT EEQDEAITRI PIKMSKRCQA LMRQIICFSP EKGSFCDLLG 130 140 150 160 170 180 AWLRRMNPIR ADWLSILKEL KNLDSPFYIK VAEFSLLQDS FEANARDYTK IIHYYGKLNQ 190 200 210 220 230 240 VEDAERTLLS MKNRGFLIDQ VTLTAMVQLY SKAGCHKLAE ETFNEIKLLG EPLDYRSYGS 250 260 270 280 290 300 MIMAYIRAGV PEKGESLLRE MDSQEICAGR EVYKALLRDY SMGGDAEGAK RVFDAVQIAG 310 320 330 340 350 360 ITPDVKLCGL LINAYSVSGQ SQNARLAFEN MRKAGIKATD KCVALVLAAY EKEEKLNEAL 370 380 390 400 GFLVELEKDS IMLGKEASAV LAQWFKKLGV VEEVELLLRE FSSSQSQPL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W. Nature 408:816-820(2000) [PubMed: 11130712] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[3]	"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs." Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K. , Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K. Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[4]	"Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis." Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P., Szurek B., Taconnat L., Small I. Plant Cell 16:2089-2103(2004) [PubMed: 15269332] [Abstract] Cited for: GENE FAMILY.
+	Additional computationally mapped references.

Web resources

Arabidopsis PPR Protein Database

Cross-references

Sequence databases
EMBLGenBankDDBJ	AC020622 Genomic DNA. Translation: AAF76475.1. BT010352 mRNA. Translation: AAQ56795.1. AK227853 mRNA. Translation: BAE99830.1.
IPI	IPI00531297.
PIR	F86151.
RefSeq	NP_171699.1.
UniGene	At.42625
3D structure databases
ModBase	Search...
Proteomic databases
PRIDE	Q9LPC4.
Genome annotation databases
GeneID	839299.
GenomeReviews	Gene locus AT1G01970 in contig CT485782_GR.
KEGG	ath:AT1G01970.
NMPDR	fig|3702.1.peg.307.
Organism-specific databases
GeneFarm	4821. 436.
TAIR	At1g01970.
Phylogenomic databases
OMA	IMAYIRA
Gene expression databases
Genevestigator	Q9LPC4.
Family and domain databases
InterPro	IPR002885. Pentatricopeptide_repeat. [Graphical view]
Pfam	PF01535. PPR. 6 hits. [Graphical view]
TIGRFAMs	TIGR00756. PPR. 5 hits.
PROSITE	PS51375. PPR. 6 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

PPR1_ARATH

Accession

Primary (citable) accession number: Q9LPC4

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 1, 2008
Last sequence update:	October 1, 2000
Last modified:	November 3, 2009
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)