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Protein

Pentatricopeptide repeat-containing protein At1g43980, mitochondrial

Gene

PCMP-E58

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g43980, mitochondrial
Gene namesi
Name:PCMP-E58
Ordered Locus Names:At1g43980
ORF Names:F9C16.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G43980

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 30MitochondrionSequence analysisAdd BLAST30
ChainiPRO_000034281431 – 633Pentatricopeptide repeat-containing protein At1g43980, mitochondrialAdd BLAST603

Proteomic databases

PaxDbiQ9LP03
PRIDEiQ9LP03

Expressioni

Gene expression databases

ExpressionAtlasiQ9LP03 baseline and differential
GenevisibleiQ9LP03 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G43980.1

Structurei

3D structure databases

ProteinModelPortaliQ9LP03
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati50 – 80PPR 1Add BLAST31
Repeati81 – 111PPR 2Add BLAST31
Repeati112 – 146PPR 3Add BLAST35
Repeati147 – 178PPR 4Add BLAST32
Repeati180 – 210PPR 5Add BLAST31
Repeati211 – 245PPR 6Add BLAST35
Repeati246 – 280PPR 7Add BLAST35
Repeati281 – 311PPR 8Add BLAST31
Repeati312 – 346PPR 9Add BLAST35
Repeati347 – 380PPR 10Add BLAST34
Repeati381 – 411PPR 11Add BLAST31
Repeati412 – 447PPR 12Add BLAST36
Repeati448 – 483PPR 13Add BLAST36
Repeati484 – 514PPR 14Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni519 – 594Type E motifAdd BLAST76

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000237570
InParanoidiQ9LP03
OrthoDBiEOG093605JK
PhylomeDBiQ9LP03

Family and domain databases

Gene3Di1.25.40.10, 4 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535 PPR, 5 hits
PF12854 PPR_1, 1 hit
PF13041 PPR_2, 1 hit
TIGRFAMsiTIGR00756 PPR, 3 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 12 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LP03-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFQLLRRAHG LCMPSSLYFS RLVNRSLLSK SPTLAKIVHA QLLEAGFVRT
60 70 80 90 100
TYWGNRCLQL YFKSGSVINA LQLFDDIPDK NTITWNVCLK GLFKNGYLNN
110 120 130 140 150
ALDLFDEMPE RDVVSWNTMI SGLVSCGFHE YGIRVFFDMQ RWEIRPTEFT
160 170 180 190 200
FSILASLVTC VRHGEQIHGN AICSGVSRYN LVVWNSVMDM YRRLGVFDYA
210 220 230 240 250
LSVFLTMEDR DVVSWNCLIL SCSDSGNKEV ALDQFWLMRE MEIQPDEYTV
260 270 280 290 300
SMVVSICSDL RELSKGKQAL ALCIKMGFLS NSIVLGAGID MFSKCNRLDD
310 320 330 340 350
SVKLFRELEK WDSVLCNSMI GSYSWHCCGE DALRLFILAM TQSVRPDKFT
360 370 380 390 400
FSSVLSSMNA VMLDHGADVH SLVIKLGFDL DTAVATSLME MYFKTGSVDL
410 420 430 440 450
AMGVFAKTDG KDLIFWNTVI MGLARNSRAV ESLAIFNQLL MNQSLKPDRV
460 470 480 490 500
TLMGILVACC YAGFVNEGIQ IFSSMEKAHG VNPGNEHYAC IIELLCRVGM
510 520 530 540 550
INEAKDIADK IPFEPSSHIW EPILCASLDL GDTRLAETVA KTMLESEPKS
560 570 580 590 600
SFPYLVLIKI YEMTWRWENS VKLRYAMNEH KLKSAQGSSK ISIESSVFSF
610 620 630
EADQLQIHGG HDTCALLDLL SWDSFDQKIH WSA
Length:633
Mass (Da):71,460
Last modified:October 1, 2000 - v1
Checksum:iAF40AC1F449B64B5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC022314 Genomic DNA Translation: AAF79685.1
CP002684 Genomic DNA Translation: AEE32010.2
PIRiG96503
RefSeqiNP_175064.3, NM_103524.3
UniGeneiAt.52024

Genome annotation databases

EnsemblPlantsiAT1G43980.1; AT1G43980.1; AT1G43980
GeneIDi840997
GrameneiAT1G43980.1; AT1G43980.1; AT1G43980
KEGGiath:AT1G43980

Similar proteinsi

Entry informationi

Entry nameiPPR73_ARATH
AccessioniPrimary (citable) accession number: Q9LP03
Secondary accession number(s): F4IED8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: October 1, 2000
Last modified: April 25, 2018
This is version 86 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health