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Protein

Pentatricopeptide repeat-containing protein At1g43980, mitochondrial

Gene

PCMP-E58

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g43980, mitochondrial
Gene namesi
Name:PCMP-E58
Ordered Locus Names:At1g43980
ORF Names:F9C16.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G43980.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 30MitochondrionSequence analysisAdd BLAST30
ChainiPRO_000034281431 – 633Pentatricopeptide repeat-containing protein At1g43980, mitochondrialAdd BLAST603

Proteomic databases

PaxDbiQ9LP03.
PRIDEiQ9LP03.

Expressioni

Gene expression databases

GenevisibleiQ9LP03. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G43980.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LP03.
SMRiQ9LP03.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati50 – 80PPR 1Add BLAST31
Repeati81 – 111PPR 2Add BLAST31
Repeati112 – 146PPR 3Add BLAST35
Repeati147 – 178PPR 4Add BLAST32
Repeati180 – 210PPR 5Add BLAST31
Repeati211 – 245PPR 6Add BLAST35
Repeati246 – 280PPR 7Add BLAST35
Repeati281 – 311PPR 8Add BLAST31
Repeati312 – 346PPR 9Add BLAST35
Repeati347 – 380PPR 10Add BLAST34
Repeati381 – 411PPR 11Add BLAST31
Repeati412 – 447PPR 12Add BLAST36
Repeati448 – 483PPR 13Add BLAST36
Repeati484 – 514PPR 14Add BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni519 – 594Type E motifAdd BLAST76

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated
Contains 14 PPR (pentatricopeptide) repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237570.
InParanoidiQ9LP03.
OrthoDBiEOG093605JK.
PhylomeDBiQ9LP03.

Family and domain databases

InterProiIPR002885. Pentatricopeptide_repeat.
[Graphical view]
PfamiPF01535. PPR. 5 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 12 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q9LP03-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFQLLRRAHG LCMPSSLYFS RLVNRSLLSK SPTLAKIVHA QLLEAGFVRT
60 70 80 90 100
TYWGNRCLQL YFKSGSVINA LQLFDDIPDK NTITWNVCLK GLFKNGYLNN
110 120 130 140 150
ALDLFDEMPE RDVVSWNTMI SGLVSCGFHE YGIRVFFDMQ RWEIRPTEFT
160 170 180 190 200
FSILASLVTC VRHGEQIHGN AICSGVSRYN LVVWNSVMDM YRRLGVFDYA
210 220 230 240 250
LSVFLTMEDR DVVSWNCLIL SCSDSGNKEV ALDQFWLMRE MEIQPDEYTV
260 270 280 290 300
SMVVSICSDL RELSKGKQAL ALCIKMGFLS NSIVLGAGID MFSKCNRLDD
310 320 330 340 350
SVKLFRELEK WDSVLCNSMI GSYSWHCCGE DALRLFILAM TQSVRPDKFT
360 370 380 390 400
FSSVLSSMNA VMLDHGADVH SLVIKLGFDL DTAVATSLME MYFKTGSVDL
410 420 430 440 450
AMGVFAKTDG KDLIFWNTVI MGLARNSRAV ESLAIFNQLL MNQSLKPDRV
460 470 480 490 500
TLMGILVACC YAGFVNEGIQ IFSSMEKAHG VNPGNEHYAC IIELLCRVGM
510 520 530 540 550
INEAKDIADK IPFEPSSHIW EPILCASLDL GDTRLAETVA KTMLESEPKS
560 570 580 590 600
SFPYLVLIKI YEMTWRWENS VKLRYAMNEH KLKSAQGSSK ISIESSVFSF
610 620 630
EADQLQIHGG HDTCALLDLL SWDSFDQKIH WSA
Length:633
Mass (Da):71,460
Last modified:October 1, 2000 - v1
Checksum:iAF40AC1F449B64B5
GO

Sequence cautioni

The sequence AEE32010 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC022314 Genomic DNA. Translation: AAF79685.1.
CP002684 Genomic DNA. Translation: AEE32010.1. Different initiation.
PIRiG96503.
RefSeqiNP_175064.3. NM_103524.3.
UniGeneiAt.52024.

Genome annotation databases

EnsemblPlantsiAT1G43980.1; AT1G43980.1; AT1G43980.
GeneIDi840997.
GrameneiAT1G43980.1; AT1G43980.1; AT1G43980.
KEGGiath:AT1G43980.

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC022314 Genomic DNA. Translation: AAF79685.1.
CP002684 Genomic DNA. Translation: AEE32010.1. Different initiation.
PIRiG96503.
RefSeqiNP_175064.3. NM_103524.3.
UniGeneiAt.52024.

3D structure databases

ProteinModelPortaliQ9LP03.
SMRiQ9LP03.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G43980.1.

Proteomic databases

PaxDbiQ9LP03.
PRIDEiQ9LP03.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G43980.1; AT1G43980.1; AT1G43980.
GeneIDi840997.
GrameneiAT1G43980.1; AT1G43980.1; AT1G43980.
KEGGiath:AT1G43980.

Organism-specific databases

TAIRiAT1G43980.

Phylogenomic databases

eggNOGiKOG4197. Eukaryota.
ENOG410Z7Z7. LUCA.
HOGENOMiHOG000237570.
InParanoidiQ9LP03.
OrthoDBiEOG093605JK.
PhylomeDBiQ9LP03.

Miscellaneous databases

PROiQ9LP03.

Gene expression databases

GenevisibleiQ9LP03. AT.

Family and domain databases

InterProiIPR002885. Pentatricopeptide_repeat.
[Graphical view]
PfamiPF01535. PPR. 5 hits.
PF12854. PPR_1. 1 hit.
PF13041. PPR_2. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00756. PPR. 3 hits.
PROSITEiPS51375. PPR. 12 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPPR73_ARATH
AccessioniPrimary (citable) accession number: Q9LP03
Secondary accession number(s): F4IED8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: October 1, 2000
Last modified: November 30, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.