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Protein

Probable protein phosphatase 2C 13

Gene

At1g48040

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Catalytic activityi

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Cofactori

Mg2+By similarity, Mn2+By similarityNote: Binds 2 magnesium or manganese ions per subunit.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi121Manganese 1By similarity1
Metal bindingi121Manganese 2By similarity1
Metal bindingi122Manganese 1; via carbonyl oxygenBy similarity1
Metal bindingi297Manganese 2By similarity1
Metal bindingi340Manganese 2By similarity1

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protein phosphatase

Keywords - Ligandi

Magnesium, Manganese, Metal-binding

Enzyme and pathway databases

ReactomeiR-ATH-70895. Branched-chain amino acid catabolism.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable protein phosphatase 2C 13 (EC:3.1.3.16)
Short name:
AtPP2C13
Gene namesi
Ordered Locus Names:At1g48040
ORF Names:F21D18.27, T2J15.5
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G48040.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003679441 – 383Probable protein phosphatase 2C 13Add BLAST383

Proteomic databases

PaxDbiQ9LNF4.

PTM databases

iPTMnetiQ9LNF4.

Expressioni

Gene expression databases

GenevisibleiQ9LNF4. AT.

Interactioni

Protein-protein interaction databases

BioGridi26447. 1 interactor.
STRINGi3702.AT1G48040.1.

Structurei

3D structure databases

ProteinModelPortaliQ9LNF4.
SMRiQ9LNF4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini78 – 349PPM-type phosphatasePROSITE-ProRule annotationAdd BLAST272

Sequence similaritiesi

Belongs to the PP2C family.Curated
Contains 1 PPM-type phosphatase domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0698. Eukaryota.
COG0631. LUCA.
HOGENOMiHOG000233896.
InParanoidiQ9LNF4.
KOiK14803.
OMAiDDEHIRI.
OrthoDBiEOG09360E05.
PhylomeDBiQ9LNF4.

Family and domain databases

Gene3Di3.60.40.10. 1 hit.
InterProiIPR015655. PP2C.
IPR000222. PP2C_BS.
IPR001932. PPM-type_phosphatase_dom.
[Graphical view]
PANTHERiPTHR13832. PTHR13832. 1 hit.
PfamiPF00481. PP2C. 1 hit.
[Graphical view]
SMARTiSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 1 hit.
PROSITEiPS01032. PPM_1. 1 hit.
PS51746. PPM_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q9LNF4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MILSQTMVAE AEIRVLDVKC HISAPKDQKN FQIDEVRVSE SVRAEISGSA
60 70 80 90 100
ETPRFGSGMS CVTTTIGESA SDFIPTIRSG SFADIRSRET MEDEHICIDD
110 120 130 140 150
LSAHLGSYNF SVPSAFYGVF DGHGGPEAAI FMKENLTRLF FQDAVFPEMP
160 170 180 190 200
SIVDAFFLEE LENSHRKAFA LADLAMADET IVSGSCGTTA LTALIIGRHL
210 220 230 240 250
LVANAGDCRA VLCRRGVAVD MSFDHRSTYE PERRRIEDLG GYFEDGYLNG
260 270 280 290 300
VLAVTRAIGD WELKNPFTDS SSPLISDPEI GQIILTEDDE FLILACDGIW
310 320 330 340 350
DVLSSQNAVS NVRQGLRRHG DPRQCAMELG KEAARLQSSD NMTVIVICFS
360 370 380
SVPSSPKQPQ RRRLRFCVSD EARARLQAML AGE
Length:383
Mass (Da):42,106
Last modified:April 14, 2009 - v2
Checksum:i4304B1895B801ECF
GO

Sequence cautioni

The sequence AAF79528 differs from that shown. Reason: Erroneous initiation.Curated
The sequence AAG51521 differs from that shown. Reason: Erroneous initiation.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti160E → G in BAD44439 (Ref. 3) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC023673 Genomic DNA. Translation: AAF79528.1. Different initiation.
AC051631 Genomic DNA. Translation: AAG51521.1. Different initiation.
CP002684 Genomic DNA. Translation: AEE32241.1.
AK176010 mRNA. Translation: BAD43773.1.
AK176676 mRNA. Translation: BAD44439.1.
BT015400 mRNA. Translation: AAU05523.1.
RefSeqiNP_175238.2. NM_103700.4.
UniGeneiAt.38490.

Genome annotation databases

EnsemblPlantsiAT1G48040.1; AT1G48040.1; AT1G48040.
GeneIDi841222.
GrameneiAT1G48040.1; AT1G48040.1; AT1G48040.
KEGGiath:AT1G48040.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC023673 Genomic DNA. Translation: AAF79528.1. Different initiation.
AC051631 Genomic DNA. Translation: AAG51521.1. Different initiation.
CP002684 Genomic DNA. Translation: AEE32241.1.
AK176010 mRNA. Translation: BAD43773.1.
AK176676 mRNA. Translation: BAD44439.1.
BT015400 mRNA. Translation: AAU05523.1.
RefSeqiNP_175238.2. NM_103700.4.
UniGeneiAt.38490.

3D structure databases

ProteinModelPortaliQ9LNF4.
SMRiQ9LNF4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi26447. 1 interactor.
STRINGi3702.AT1G48040.1.

PTM databases

iPTMnetiQ9LNF4.

Proteomic databases

PaxDbiQ9LNF4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G48040.1; AT1G48040.1; AT1G48040.
GeneIDi841222.
GrameneiAT1G48040.1; AT1G48040.1; AT1G48040.
KEGGiath:AT1G48040.

Organism-specific databases

TAIRiAT1G48040.

Phylogenomic databases

eggNOGiKOG0698. Eukaryota.
COG0631. LUCA.
HOGENOMiHOG000233896.
InParanoidiQ9LNF4.
KOiK14803.
OMAiDDEHIRI.
OrthoDBiEOG09360E05.
PhylomeDBiQ9LNF4.

Enzyme and pathway databases

ReactomeiR-ATH-70895. Branched-chain amino acid catabolism.

Miscellaneous databases

PROiQ9LNF4.

Gene expression databases

GenevisibleiQ9LNF4. AT.

Family and domain databases

Gene3Di3.60.40.10. 1 hit.
InterProiIPR015655. PP2C.
IPR000222. PP2C_BS.
IPR001932. PPM-type_phosphatase_dom.
[Graphical view]
PANTHERiPTHR13832. PTHR13832. 1 hit.
PfamiPF00481. PP2C. 1 hit.
[Graphical view]
SMARTiSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMiSSF81606. SSF81606. 1 hit.
PROSITEiPS01032. PPM_1. 1 hit.
PS51746. PPM_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiP2C13_ARATH
AccessioniPrimary (citable) accession number: Q9LNF4
Secondary accession number(s): Q67XZ2, Q67ZV7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: April 14, 2009
Last modified: November 30, 2016
This is version 100 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.